0.014017 0.000000 0.002682 0.000000 0.013881 0.000000 0.000000 0.000000 0.013957 0.00000 0.00000 0.00000 Katz, B.A. Luong, C. Ho, J.D. Somoza, J.R. Gjerstad, E. Tang, J. Williams, S.R. Verner, E. Mackman, R.L. Young, W.B. Sprengeler, P.A. Chan, H. Mortara, K. Janc, J.W. McGrath, M.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.0 100.83 90.0 71.34 72.04 72.95 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C21 H23 F N4 O2 382.431 2-{5-[AMINO(IMINIO)METHYL]-6-FLUORO-1H-BENZIMIDAZOL-2-YL}-6-[(2-METHYLCYCLOHEXYL)OXY]BENZENOLATE CRA_11092 non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA Y 75 N C Y 76 N C N 77 N F Y 78 N C Y 79 N C Y 80 N C Y 81 N C N 82 N C N 83 N N N 84 N N Y 85 N N Y 86 N N Y 87 N C Y 88 N C Y 89 N C Y 90 N C Y 91 N C Y 92 N C Y 93 N C N 94 N O N 95 N O N 96 S C N 97 N C N 98 N C N 99 N C N 100 N C N 101 S C N 102 N C N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 R C N 128 N C N 129 N O N 130 N C N 131 N S N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 N C N 181 N C N 182 N O N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N NA N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 R C N 362 N O N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N N Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C N 412 N O N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N S N 436 N O N 437 N O N 438 N O N 439 N C N 440 N O N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C N 458 N C N 459 N C N 460 N O N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing Y 70 N doub Y 71 N sing N 72 N sing N 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing Y 78 N sing Y 79 N doub Y 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing Y 88 N sing N 89 N sing Y 90 N doub Y 91 N sing Y 92 N doub Y 93 N sing Y 94 N sing N 95 N sing Y 96 N doub N 97 N sing Y 98 N sing N 99 N sing Y 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N sing Y 380 N doub N 381 N sing Y 382 N doub N 383 N sing Y 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N doub N 435 N sing N 436 N sing N 437 N doub N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 344 527 547 10.1016/j.jmb.2004.09.032 15522303 Dissecting and designing inhibitor selectivity determinants at the S1 site using an artificial Ala190 protease (Ala190 uPA). 2004 10.2210/pdb1o5g/pdb pdb_00001o5g 285 Crystal Cooler 1 IMAGE PLATE 2002-05-22 RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 4096.534 Prothrombin 3.4.21.5 LIGHT CHAIN, RESIDUES 328-363 1 nat polymer 29780.219 Prothrombin 3.4.21.5 HEAVY CHAIN, RESIDUES 364-620 1 nat polymer 1491.528 Hirudin IIIB' 1 syn polymer 22.990 SODIUM ION 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 382.431 2-{5-[AMINO(IMINIO)METHYL]-6-FLUORO-1H-BENZIMIDAZOL-2-YL}-6-[(2-METHYLCYCLOHEXYL)OXY]BENZENOLATE 1 syn non-polymer 18.015 water 118 nat water Coagulation factor II Coagulation factor II E.C.3.4.21.5 E.C.3.4.21.5 no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes DFEEIPEE(TYS)LQ DFEEIPEEYLQ I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 1 2.60 52.72 VAPOR DIFFUSION 7.50 2-propanol, PEG 4000, pH 6.5, vapor diffusion at 298 K, pH 7.50 298 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Other Atomic model Data collection Database references Derived calculations 1 0 2004-09-21 1 1 2008-04-26 1 2 2011-07-13 1 3 2012-12-12 1 4 2013-03-13 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_auth_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id the same protein complexed with a different inhibitor RCSB Y RCSB 2003-09-09 REL REL NA SODIUM ION CA CALCIUM ION CR9 2-{5-[AMINO(IMINIO)METHYL]-6-FLUORO-1H-BENZIMIDAZOL-2-YL}-6-[(2-METHYLCYCLOHEXYL)OXY]BENZENOLATE HOH water 6421 Hirudo medicinalis sample NA 391 4 NA NA 391 H CA 392 5 CA CA 392 H CR9 246 6 CR9 CR9 393 H HOH 439 7 HOH HOH 439 L HOH 440 7 HOH HOH 440 L HOH 449 7 HOH HOH 449 L HOH 485 7 HOH HOH 485 L HOH 534 7 HOH HOH 534 L HOH 599 7 HOH HOH 599 L HOH 700 7 HOH HOH 700 L HOH 739 7 HOH HOH 739 L HOH 1424 7 HOH HOH 1424 L HOH 393 7 HOH HOH 394 H HOH 394 7 HOH HOH 395 H HOH 395 7 HOH HOH 396 H HOH 401 7 HOH HOH 397 H HOH 402 7 HOH HOH 398 H HOH 403 7 HOH HOH 399 H HOH 404 7 HOH HOH 400 H HOH 405 7 HOH HOH 401 H HOH 406 7 HOH HOH 402 H HOH 407 7 HOH HOH 403 H HOH 408 7 HOH HOH 404 H HOH 410 7 HOH HOH 405 H HOH 411 7 HOH HOH 406 H HOH 412 7 HOH HOH 407 H HOH 413 7 HOH HOH 408 H HOH 414 7 HOH HOH 409 H HOH 415 7 HOH HOH 410 H HOH 416 7 HOH HOH 411 H HOH 417 7 HOH HOH 412 H HOH 418 7 HOH HOH 413 H HOH 419 7 HOH HOH 414 H HOH 420 7 HOH HOH 415 H HOH 421 7 HOH HOH 416 H HOH 423 7 HOH HOH 417 H HOH 425 7 HOH HOH 418 H HOH 426 7 HOH HOH 419 H HOH 427 7 HOH HOH 420 H HOH 428 7 HOH HOH 421 H HOH 430 7 HOH HOH 422 H HOH 431 7 HOH HOH 423 H HOH 432 7 HOH HOH 424 H HOH 435 7 HOH HOH 425 H HOH 437 7 HOH HOH 426 H HOH 438 7 HOH HOH 427 H HOH 442 7 HOH HOH 428 H HOH 443 7 HOH HOH 429 H HOH 444 7 HOH HOH 430 H HOH 445 7 HOH HOH 431 H HOH 446 7 HOH HOH 432 H HOH 447 7 HOH HOH 433 H HOH 450 7 HOH HOH 434 H HOH 451 7 HOH HOH 435 H HOH 453 7 HOH HOH 436 H HOH 455 7 HOH HOH 437 H HOH 456 7 HOH HOH 438 H HOH 458 7 HOH HOH 439 H HOH 461 7 HOH HOH 440 H HOH 467 7 HOH HOH 441 H HOH 471 7 HOH HOH 442 H HOH 473 7 HOH HOH 443 H HOH 476 7 HOH HOH 444 H HOH 477 7 HOH HOH 445 H HOH 479 7 HOH HOH 446 H HOH 481 7 HOH HOH 447 H HOH 483 7 HOH HOH 448 H HOH 486 7 HOH HOH 449 H HOH 488 7 HOH HOH 450 H HOH 489 7 HOH HOH 451 H HOH 490 7 HOH HOH 452 H HOH 491 7 HOH HOH 453 H HOH 494 7 HOH HOH 454 H HOH 495 7 HOH HOH 455 H HOH 496 7 HOH HOH 456 H HOH 498 7 HOH HOH 457 H HOH 500 7 HOH HOH 458 H HOH 503 7 HOH HOH 459 H HOH 504 7 HOH HOH 460 H HOH 507 7 HOH HOH 461 H HOH 515 7 HOH HOH 462 H HOH 518 7 HOH HOH 463 H HOH 527 7 HOH HOH 464 H HOH 530 7 HOH HOH 465 H HOH 542 7 HOH HOH 466 H HOH 547 7 HOH HOH 467 H HOH 551 7 HOH HOH 468 H HOH 553 7 HOH HOH 469 H HOH 557 7 HOH HOH 470 H HOH 561 7 HOH HOH 471 H HOH 568 7 HOH HOH 472 H HOH 577 7 HOH HOH 473 H HOH 609 7 HOH HOH 474 H HOH 619 7 HOH HOH 475 H HOH 620 7 HOH HOH 476 H HOH 667 7 HOH HOH 477 H HOH 674 7 HOH HOH 478 H HOH 747 7 HOH HOH 479 H HOH 766 7 HOH HOH 480 H HOH 897 7 HOH HOH 481 H HOH 1040 7 HOH HOH 482 H HOH 1123 7 HOH HOH 483 H HOH 1162 7 HOH HOH 484 H HOH 1210 7 HOH HOH 485 H HOH 1222 7 HOH HOH 486 H HOH 1248 7 HOH HOH 487 H HOH 1344 7 HOH HOH 488 H HOH 1350 7 HOH HOH 489 H HOH 1367 7 HOH HOH 490 H HOH 1406 7 HOH HOH 491 H HOH 1446 7 HOH HOH 492 H HOH 1462 7 HOH HOH 493 H HOH 1470 7 HOH HOH 494 H HOH 1475 7 HOH HOH 495 H HOH 1493 7 HOH HOH 496 H HOH 1501 7 HOH HOH 497 H HOH 1502 7 HOH HOH 498 H HOH 1533 7 HOH HOH 499 H HOH 1553 7 HOH HOH 500 H HOH 1562 7 HOH HOH 501 H HOH 520 7 HOH HOH 520 I THR 1 n 1 H THR 1 L PHE 1 n 2 G PHE 1 L GLY 1 n 3 F GLY 1 L SER 1 n 4 E SER 1 L GLY 1 n 5 D GLY 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L n 34 15 L n 35 16 L n 36 17 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 A 147 H n 149 B 147 H n 150 C 147 H n 151 D 147 H n 152 E 147 H n 153 F 147 H n 154 G 147 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H n 258 246 H n 259 247 H ASP 55 n 1 ASP 55 I PHE 56 n 2 PHE 56 I GLU 57 n 3 GLU 57 I GLU 58 n 4 GLU 58 I ILE 59 n 5 ILE 59 I PRO 60 n 6 PRO 60 I GLU 61 n 7 GLU 61 I GLU 62 n 8 GLU 62 I STY 63 n 9 TYS 63 I LEU 64 n 10 LEU 64 I GLN 65 n 11 GLN 65 I author_and_software_defined_assembly PISA 3 trimeric 5050 -30 12740 A H PHE 204 B O PHE 215 1_555 H CA 392 E CA CA 1_555 H HOH 424 H O HOH 1_555 172.1 A H PHE 204 B O PHE 215 1_555 H CA 392 E CA CA 1_555 H HOH 477 H O HOH 1_555 81.3 H HOH 424 H O HOH 1_555 H CA 392 E CA CA 1_555 H HOH 477 H O HOH 1_555 104.2 A H PHE 204 B O PHE 215 1_555 H CA 392 E CA CA 1_555 H HOH 484 H O HOH 1_555 81.2 H HOH 424 H O HOH 1_555 H CA 392 E CA CA 1_555 H HOH 484 H O HOH 1_555 92.5 H HOH 477 H O HOH 1_555 H CA 392 E CA CA 1_555 H HOH 484 H O HOH 1_555 96.7 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 H LYS 224 B O LYS 236 1_555 96.9 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 H HOH 411 H O HOH 1_555 161.3 H LYS 224 B O LYS 236 1_555 H NA 391 D NA NA 1_555 H HOH 411 H O HOH 1_555 69.0 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 H HOH 414 H O HOH 1_555 88.3 H LYS 224 B O LYS 236 1_555 H NA 391 D NA NA 1_555 H HOH 414 H O HOH 1_555 90.4 H HOH 411 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 414 H O HOH 1_555 79.9 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 H HOH 431 H O HOH 1_555 89.8 H LYS 224 B O LYS 236 1_555 H NA 391 D NA NA 1_555 H HOH 431 H O HOH 1_555 166.7 H HOH 411 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 431 H O HOH 1_555 101.8 H HOH 414 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 431 H O HOH 1_555 78.3 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 89.8 H LYS 224 B O LYS 236 1_555 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 82.9 H HOH 411 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 100.1 H HOH 414 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 172.7 H HOH 431 H O HOH 1_555 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 108.7 I TYS 63 O-SULFO-L-TYROSINE C TYS 9 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 20 B N SER 5 H O VAL 157 B O VAL 162 H O LEU 160 B O LEU 165 H N GLY 136 B N GLY 136 H N ARG 137 B N ARG 137 H O VAL 200 B O VAL 210 H N MET 201 B N MET 211 H O TYR 208 B O TYR 220 H N TRP 215 B N TRP 227 H O PHE 227 B O PHE 239 H O TYR 228 B O TYR 240 H N PHE 181 B N PHE 186 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 H N LEU 33 B N LEU 18 H O LEU 41 B O LEU 27 H N SER 45 B N SER 31 H O LEU 53 B O LEU 39 H N THR 54 B N THR 40 H O ALA 104 B O ALA 101 H O LYS 107 B O LYS 104 H N LYS 87 B N LYS 83 A H N TYR 60 B N TYR 47 F H O LYS 60 B O LYS 52 1 H HOH 394 H HOH 1 H HOH 395 H HOH 1 H HOH 396 H HOH 1 L ASP 15 A ASP 34 1 Y 1 L GLY 16 A GLY 35 1 Y 1 L ARG 17 A ARG 36 1 Y A 1 H TRP 147 B TRP 148 1 Y B 1 H THR 147 B THR 149 1 Y C 1 H ALA 147 B ALA 150 1 Y D 1 H ASN 147 B ASN 151 1 Y E 1 H VAL 147 B VAL 152 1 Y F 1 H GLY 147 B GLY 153 1 Y G 1 H LYS 147 B LYS 154 1 Y 1 H GLY 246 B GLY 258 1 Y 1 H GLU 247 B GLU 259 1 Y 1 H C6B CR9 393 WRONG HAND 1 H H HG HN3 SER CR9 195 393 1.07 1 H H OG H2 SER HOH 195 445 1.20 1 H H HG O6' SER CR9 195 393 1.20 1 H H OG HN3 SER CR9 195 393 1.38 1 H H O6' H1 CR9 HOH 393 445 1.45 1 H H OG1 H2 THR HOH 74 451 1.52 1 H H O H1 LYS HOH 110 481 1.53 1 H H O H2 ALA HOH 113 473 1.57 1 H H F2 H1 CR9 HOH 393 475 1.57 1 H H OH H2 TYR HOH 225 491 1.57 1 H H O H1 VAL HOH 163 413 1.58 1 H H OG O SER HOH 195 445 2.03 D 1 L ARG 14 0.099 SIDE CHAIN 1 H ARG 35 0.078 SIDE CHAIN 1 H ARG 50 0.099 SIDE CHAIN 1 H ARG 67 0.191 SIDE CHAIN 1 H ARG 75 0.146 SIDE CHAIN 1 H ARG 93 0.259 SIDE CHAIN 1 H ARG 126 0.230 SIDE CHAIN 1 H ARG 173 0.208 SIDE CHAIN 1 H ARG 187 0.188 SIDE CHAIN A 1 H ARG 221 0.110 SIDE CHAIN 1 H ARG 233 0.156 SIDE CHAIN F F F 1 -22.26 2.50 113.10 90.84 L L L N CA C GLY GLY GLY 1 1 1 N 1 -3.57 0.50 120.30 116.73 L L L NE CZ NH2 ARG ARG ARG 4 4 4 N 1 -3.56 0.50 120.30 116.74 H H H NE CZ NH2 ARG ARG ARG 35 35 35 N A A A 1 -5.13 0.50 120.30 115.17 H H H NE CZ NH2 ARG ARG ARG 77 77 77 N 1 -3.05 0.50 120.30 117.25 H H H NE CZ NH2 ARG ARG ARG 97 97 97 N 1 -4.34 0.50 120.30 115.96 H H H NE CZ NH2 ARG ARG ARG 101 101 101 N 1 8.16 1.10 114.20 122.36 H H H CA CB SG CYS CYS CYS 122 122 122 N 1 -3.76 0.60 121.00 117.24 H H H CB CG CD2 TYR TYR TYR 134 134 134 N 1 -3.12 0.50 120.30 117.18 H H H NE CZ NH2 ARG ARG ARG 173 173 173 N 1 7.43 1.10 114.20 121.63 H H H CA CB SG CYS CYS CYS 182 182 182 N 1 -4.09 0.50 120.30 116.21 H H H NE CZ NH1 ARG ARG ARG 187 187 187 N 1 -19.12 2.70 111.00 91.88 H H H N CA C PHE PHE PHE 199 199 199 N 1 -4.19 0.50 120.30 116.11 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N 1 H H NE2 CD2 HIS HIS 91 91 -0.086 0.011 1.373 1.287 N 1 H H NE2 CD2 HIS HIS 230 230 -0.067 0.011 1.373 1.306 N E 1 L SER 1 -124.76 -65.44 C 1 L GLU 1 -72.01 30.24 B 1 L ALA 1 67.86 -44.91 1 L PHE 7 -126.24 -88.95 A 1 H TYR 60 -152.21 78.12 G 1 H ASN 60 -161.30 82.89 1 H HIS 71 -131.25 -55.46 1 H ASN 78 71.20 -4.54 A 1 H ASP 186 -95.57 52.19 1 H SER 195 -39.95 140.60 Asp_H21, Met_H84, His_H119, Val_H157 were simultaneously refined in two conformations. Residues after Ile_L16K (light chain) have weak or no density, and are not included in the model. Density is absent for the last two residues of the heavy chain, which are not included in the model. No density was observed for Thr147, Trp148, Thr149, Ala149A, Asn149B, Val149C, Gly149D, and Lys149E in the autolysis loop, and these residues are not included in the model. In the non-active site peptide inhibitor (acetylhirudin) the tyrosine hydroxyl is sulfonated. HOH477, OgSer195 and O6' and N3 of the inhibitor make a 3-centered short hydrogen bond array. Disordered waters include: HOH_395 is close to a symmetry related equivalent of itself. AHOH_393 is close to BHOH_393. AHOH_394 is close to a symmetry related equivalent of itself. BHOH_395 is close to a symmetry related equivalent of itself. HOH_393, HOH_394, and HOH_395 form a cluster of density Density for these "waters" is greater than for real waters, so occupancies were refined. AHOH_674 is close to BHOH_674. 0.238 0.208 0.21 1.75 7.0 2688 36036 26771 10 74.29 1 THROUGHOUT 1.10 FOURIER SYNTHESIS X-PLOR force field 1.75 7.0 118 2540 30 0 2392 0.018 3.6 1.75 27.69 1O5G 36636 35940 0.00 0.068 1 7.1 3.0 98.10 0.418 1.75 1.83 1.0 4480 1 39.06 data collection CrystalClear 1.3 data reduction CrystalClear 1.3 refinement X-PLOR 3.851 data scaling CrystalClear (MSC/RIGAKU) model building Quanta Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA) 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N L PHE 7 A PHE 15 HELX_P L SER 11 A SER 19 5 1 5 L THR 14 A THR 24 HELX_P L TYR 14 A TYR 32 1 2 9 B J H ALA 55 B ALA 41 HELX_P H CYS 58 B CYS 44 5 3 4 H PRO 60 B PRO 48 HELX_P H ASP 60 B ASP 51 5 4 4 B E H THR 60 B THR 55 HELX_P H ASN 62 B ASN 57 5 5 3 I H ASP 125 B ASP 122 HELX_P H LEU 130 B LEU 130 1 6 9 H GLU 164 B GLU 169 HELX_P H ASP 170 B ASP 175 1 7 7 H LYS 185 B LYS 191 HELX_P H GLY 186 B GLY 195 5 8 5 C H VAL 231 B VAL 243 HELX_P H ASP 243 B ASP 255 1 9 13 I PRO 60 C PRO 6 HELX_P I LEU 64 C LEU 10 5 10 5 disulf 2.012 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.031 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.024 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.029 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.306 both I GLU 62 C C GLU 8 1_555 I TYS 63 C N TYS 9 1_555 covale 1.293 both I TYS 63 C C TYS 9 1_555 I LEU 64 C N LEU 10 1_555 metalc 2.434 A H PHE 204 B O PHE 215 1_555 H CA 392 E CA CA 1_555 metalc 2.477 A H ARG 221 B O ARG 233 1_555 H NA 391 D NA NA 1_555 metalc 2.484 H LYS 224 B O LYS 236 1_555 H NA 391 D NA NA 1_555 metalc 2.668 H NA 391 D NA NA 1_555 H HOH 411 H O HOH 1_555 metalc 2.962 H NA 391 D NA NA 1_555 H HOH 414 H O HOH 1_555 metalc 2.589 H NA 391 D NA NA 1_555 H HOH 431 H O HOH 1_555 metalc 2.540 H NA 391 D NA NA 1_555 H HOH 433 H O HOH 1_555 metalc 2.396 H CA 392 E CA CA 1_555 H HOH 424 H O HOH 1_555 metalc 2.440 H CA 392 E CA CA 1_555 H HOH 477 H O HOH 1_555 metalc 2.399 H CA 392 E CA CA 1_555 H HOH 484 H O HOH 1_555 BLOOD CLOTTING,HYDROLASE/INHIBITOR Ala190 uPA, S1 site, selectivity, conserved water displacement hydrogen bond deficit, trypsin, thrombin, hepsin, factor VIIa, BLOOD CLOTTING, hydrolase, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, HYDROLASE-INHIBITOR complex H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -14.20 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITHK_HIRME UNP 3 55 P28511 328 363 1O5G 1 17 P00734 H L 1 1 36 364 622 1O5G 16 247 P00734 H 2 1 259 55 65 1O5G 55 65 P28511 I 3 1 11 3 TYR modified residue TYS 63 1O5G I P28511 UNP 63 9 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 B SER 5 H ASP 21 B ASP 6 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H PRO 198 B PRO 208 H LYS 202 B LYS 212 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H MET 180 B MET 185 H ALA 183 B ALA 188 H LYS 81 B LYS 77 H SER 83 B SER 79 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H LEU 46 B LEU 32 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LEU 85 B LEU 81 H ILE 90 B ILE 86 H LEU 60 B LEU 46 H TYR 60 B TYR 47 A H LYS 60 B LYS 52 H ASN 60 B ASN 53 F G BINDING SITE FOR RESIDUE NA H 391 H NA 391 Software 6 BINDING SITE FOR RESIDUE CA H 392 H CA 392 Software 6 BINDING SITE FOR RESIDUE CR9 H 393 H CR9 393 Software 14 BINDING SITE FOR CHAIN I OF HIRUDIN IIIB' Software 17 H ARG 221 B ARG 233 A 6 1_555 H LYS 224 B LYS 236 6 1_555 H HOH 411 H HOH 6 1_555 H HOH 414 H HOH 6 1_555 H HOH 431 H HOH 6 1_555 H HOH 433 H HOH 6 1_555 H LYS 169 B LYS 174 6 4_556 H THR 172 B THR 177 6 4_556 H PHE 204 B PHE 215 A 6 1_555 H HOH 424 H HOH 6 1_555 H HOH 477 H HOH 6 1_555 H HOH 484 H HOH 6 1_555 H LEU 41 B LEU 27 14 1_555 H HIS 57 B HIS 43 14 1_555 H CYS 58 B CYS 44 14 1_555 H LYS 60 B LYS 52 F 14 1_555 H ASP 189 B ASP 199 14 1_555 H ALA 190 B ALA 200 14 1_555 H GLU 192 B GLU 202 14 1_555 H SER 195 B SER 205 14 1_555 H VAL 213 B VAL 225 14 1_555 H GLY 219 B GLY 230 14 1_555 H GLY 226 B GLY 238 14 1_555 H HOH 445 H HOH 14 1_555 H HOH 475 H HOH 14 1_555 H HOH 476 H HOH 14 1_555 H PHE 34 B PHE 19 17 1_555 H LYS 36 B LYS 21 17 1_555 H GLN 38 B GLN 24 17 1_555 H LEU 40 B LEU 26 17 1_555 H LEU 65 B LEU 60 17 1_555 H ARG 67 B ARG 62 17 1_555 H ARG 73 B ARG 68 17 1_555 H THR 74 B THR 69 17 1_555 H ARG 75 B ARG 70 17 1_555 H ARG 75 B ARG 70 17 2_555 H TYR 76 B TYR 71 17 1_555 H LYS 81 B LYS 77 17 1_555 H ILE 82 B ILE 78 17 1_555 H MET 84 B MET 80 17 1_555 H HOH 442 H HOH 17 1_555 H HOH 487 H HOH 17 2_555 I HOH 520 I HOH 17 1_555 5 monoclinic C 1 2 1