0.012160 0.007020 0.000000 0.000000 0.014041 0.000000 0.000000 0.000000 0.003794 0.00000 0.00000 0.00000 Yu, Y. Liu, Y. Shen, N. Xu, X. Jia, J. Jin, Y. Arnold, E. Ding, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 82.240 82.240 263.560 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.BIOL.CHEM. JBCHA3 0071 0021-9258 279 8378 8388 10.1074/jbc.M311284200 14660560 Crystal Structure of Human Tryptophanyl-tRNA Synthetase Catalytic Fragment 2004 10.2210/pdb1o5t/pdb pdb_00001o5t 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirror CCD 2003-02-10 ADSC QUANTUM 4 GRAPHITE MAD M x-ray 1 0.916 1.0 0.9500 1.0 0.9790 1.0 0.9787 1.0 F1 CHESS 0.916, 0.9500, 0.9790, 0.9787 SYNCHROTRON CHESS BEAMLINE F1 43386.477 Tryptophanyl-tRNA synthetase 6.1.1.2 aminoacylation catalytic fragment 1 man polymer 18.015 water 107 nat water Tryptophan--tRNA ligase, TrpRS, IFP53, hWRS no no SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli BL21(DE3) Codon-Plus plasmid pET24a(+) 1 2.91 57.33 VAPOR DIFFUSION, HANGING DROP 8.2 16% PEG1500, 4% PEG3350, 0.2M tri-sodium citrate dihydrate, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references 1 0 2004-07-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession PDBJ Y PDBJ 2003-10-05 REL REL HOH water TIP 1 2 HOH HOH 472 A TIP 2 2 HOH HOH 473 A TIP 3 2 HOH HOH 474 A TIP 4 2 HOH HOH 475 A TIP 5 2 HOH HOH 476 A TIP 6 2 HOH HOH 477 A TIP 7 2 HOH HOH 478 A TIP 8 2 HOH HOH 479 A TIP 9 2 HOH HOH 480 A TIP 10 2 HOH HOH 481 A TIP 11 2 HOH HOH 482 A TIP 12 2 HOH HOH 483 A TIP 13 2 HOH HOH 484 A TIP 14 2 HOH HOH 485 A TIP 15 2 HOH HOH 486 A TIP 16 2 HOH HOH 487 A TIP 17 2 HOH HOH 488 A TIP 18 2 HOH HOH 489 A TIP 19 2 HOH HOH 490 A TIP 20 2 HOH HOH 491 A TIP 21 2 HOH HOH 492 A TIP 22 2 HOH HOH 493 A TIP 23 2 HOH HOH 494 A TIP 24 2 HOH HOH 495 A TIP 25 2 HOH HOH 496 A TIP 26 2 HOH HOH 497 A TIP 27 2 HOH HOH 498 A TIP 28 2 HOH HOH 499 A TIP 29 2 HOH HOH 500 A TIP 30 2 HOH HOH 501 A TIP 31 2 HOH HOH 502 A TIP 32 2 HOH HOH 503 A TIP 33 2 HOH HOH 504 A TIP 34 2 HOH HOH 505 A TIP 35 2 HOH HOH 506 A TIP 36 2 HOH HOH 507 A TIP 37 2 HOH HOH 508 A TIP 38 2 HOH HOH 509 A TIP 39 2 HOH HOH 510 A TIP 40 2 HOH HOH 511 A TIP 41 2 HOH HOH 512 A TIP 42 2 HOH HOH 513 A TIP 43 2 HOH HOH 514 A TIP 44 2 HOH HOH 515 A TIP 45 2 HOH HOH 516 A TIP 46 2 HOH HOH 517 A TIP 47 2 HOH HOH 518 A TIP 48 2 HOH HOH 519 A TIP 49 2 HOH HOH 520 A TIP 50 2 HOH HOH 521 A TIP 51 2 HOH HOH 522 A TIP 52 2 HOH HOH 523 A TIP 53 2 HOH HOH 524 A TIP 54 2 HOH HOH 525 A TIP 55 2 HOH HOH 526 A TIP 56 2 HOH HOH 527 A TIP 57 2 HOH HOH 528 A TIP 58 2 HOH HOH 529 A TIP 59 2 HOH HOH 530 A TIP 60 2 HOH HOH 531 A TIP 61 2 HOH HOH 532 A TIP 62 2 HOH HOH 533 A TIP 63 2 HOH HOH 534 A TIP 64 2 HOH HOH 535 A TIP 65 2 HOH HOH 536 A TIP 66 2 HOH HOH 537 A TIP 67 2 HOH HOH 538 A TIP 68 2 HOH HOH 539 A TIP 69 2 HOH HOH 540 A TIP 70 2 HOH HOH 541 A TIP 71 2 HOH HOH 542 A TIP 72 2 HOH HOH 543 A TIP 73 2 HOH HOH 544 A TIP 74 2 HOH HOH 545 A TIP 75 2 HOH HOH 546 A TIP 76 2 HOH HOH 547 A TIP 77 2 HOH HOH 548 A TIP 78 2 HOH HOH 549 A TIP 79 2 HOH HOH 550 A TIP 80 2 HOH HOH 551 A TIP 81 2 HOH HOH 552 A TIP 82 2 HOH HOH 553 A TIP 83 2 HOH HOH 554 A TIP 84 2 HOH HOH 555 A TIP 85 2 HOH HOH 556 A TIP 86 2 HOH HOH 557 A TIP 87 2 HOH HOH 558 A TIP 88 2 HOH HOH 559 A TIP 89 2 HOH HOH 560 A TIP 90 2 HOH HOH 561 A TIP 91 2 HOH HOH 562 A TIP 92 2 HOH HOH 563 A TIP 93 2 HOH HOH 564 A TIP 94 2 HOH HOH 565 A TIP 95 2 HOH HOH 566 A TIP 96 2 HOH HOH 567 A TIP 97 2 HOH HOH 568 A TIP 98 2 HOH HOH 569 A TIP 99 2 HOH HOH 570 A TIP 100 2 HOH HOH 571 A TIP 101 2 HOH HOH 572 A TIP 102 2 HOH HOH 573 A TIP 103 2 HOH HOH 574 A TIP 104 2 HOH HOH 575 A TIP 105 2 HOH HOH 576 A TIP 106 2 HOH HOH 577 A TIP 107 2 HOH HOH 578 A SER 94 n 1 SER 94 A ALA 95 n 2 ALA 95 A LYS 96 n 3 LYS 96 A GLY 97 n 4 GLY 97 A ILE 98 n 5 ILE 98 A ASP 99 n 6 ASP 99 A TYR 100 n 7 TYR 100 A ASP 101 n 8 ASP 101 A LYS 102 n 9 LYS 102 A LEU 103 n 10 LEU 103 A ILE 104 n 11 ILE 104 A VAL 105 n 12 VAL 105 A ARG 106 n 13 ARG 106 A PHE 107 n 14 PHE 107 A GLY 108 n 15 GLY 108 A SER 109 n 16 SER 109 A SER 110 n 17 SER 110 A LYS 111 n 18 LYS 111 A ILE 112 n 19 ILE 112 A ASP 113 n 20 ASP 113 A LYS 114 n 21 LYS 114 A GLU 115 n 22 GLU 115 A LEU 116 n 23 LEU 116 A ILE 117 n 24 ILE 117 A ASN 118 n 25 ASN 118 A ARG 119 n 26 ARG 119 A ILE 120 n 27 ILE 120 A GLU 121 n 28 GLU 121 A ARG 122 n 29 ARG 122 A ALA 123 n 30 ALA 123 A THR 124 n 31 THR 124 A GLY 125 n 32 GLY 125 A GLN 126 n 33 GLN 126 A ARG 127 n 34 ARG 127 A PRO 128 n 35 PRO 128 A HIS 129 n 36 HIS 129 A HIS 130 n 37 HIS 130 A PHE 131 n 38 PHE 131 A LEU 132 n 39 LEU 132 A ARG 133 n 40 ARG 133 A ARG 134 n 41 ARG 134 A GLY 135 n 42 GLY 135 A ILE 136 n 43 ILE 136 A PHE 137 n 44 PHE 137 A PHE 138 n 45 PHE 138 A SER 139 n 46 SER 139 A HIS 140 n 47 HIS 140 A ARG 141 n 48 ARG 141 A ASP 142 n 49 ASP 142 A MET 143 n 50 MET 143 A ASN 144 n 51 ASN 144 A GLN 145 n 52 GLN 145 A VAL 146 n 53 VAL 146 A LEU 147 n 54 LEU 147 A ASP 148 n 55 ASP 148 A ALA 149 n 56 ALA 149 A TYR 150 n 57 TYR 150 A GLU 151 n 58 GLU 151 A ASN 152 n 59 ASN 152 A LYS 153 n 60 LYS 153 A LYS 154 n 61 LYS 154 A PRO 155 n 62 PRO 155 A PHE 156 n 63 PHE 156 A TYR 157 n 64 TYR 157 A LEU 158 n 65 LEU 158 A TYR 159 n 66 TYR 159 A THR 160 n 67 THR 160 A GLY 161 n 68 GLY 161 A ARG 162 n 69 ARG 162 A GLY 163 n 70 GLY 163 A PRO 164 n 71 PRO 164 A SER 165 n 72 SER 165 A SER 166 n 73 SER 166 A GLU 167 n 74 GLU 167 A ALA 168 n 75 ALA 168 A MET 169 n 76 MET 169 A HIS 170 n 77 HIS 170 A VAL 171 n 78 VAL 171 A GLY 172 n 79 GLY 172 A HIS 173 n 80 HIS 173 A LEU 174 n 81 LEU 174 A ILE 175 n 82 ILE 175 A PRO 176 n 83 PRO 176 A PHE 177 n 84 PHE 177 A ILE 178 n 85 ILE 178 A PHE 179 n 86 PHE 179 A THR 180 n 87 THR 180 A LYS 181 n 88 LYS 181 A TRP 182 n 89 TRP 182 A LEU 183 n 90 LEU 183 A GLN 184 n 91 GLN 184 A ASP 185 n 92 ASP 185 A VAL 186 n 93 VAL 186 A PHE 187 n 94 PHE 187 A ASN 188 n 95 ASN 188 A VAL 189 n 96 VAL 189 A PRO 190 n 97 PRO 190 A LEU 191 n 98 LEU 191 A VAL 192 n 99 VAL 192 A ILE 193 n 100 ILE 193 A GLN 194 n 101 GLN 194 A MET 195 n 102 MET 195 A THR 196 n 103 THR 196 A ASP 197 n 104 ASP 197 A ASP 198 n 105 ASP 198 A GLU 199 n 106 GLU 199 A LYS 200 n 107 LYS 200 A TYR 201 n 108 TYR 201 A LEU 202 n 109 LEU 202 A TRP 203 n 110 TRP 203 A LYS 204 n 111 LYS 204 A ASP 205 n 112 ASP 205 A LEU 206 n 113 LEU 206 A THR 207 n 114 THR 207 A LEU 208 n 115 LEU 208 A ASP 209 n 116 ASP 209 A GLN 210 n 117 GLN 210 A ALA 211 n 118 ALA 211 A TYR 212 n 119 TYR 212 A SER 213 n 120 SER 213 A TYR 214 n 121 TYR 214 A ALA 215 n 122 ALA 215 A VAL 216 n 123 VAL 216 A GLU 217 n 124 GLU 217 A ASN 218 n 125 ASN 218 A ALA 219 n 126 ALA 219 A LYS 220 n 127 LYS 220 A ASP 221 n 128 ASP 221 A ILE 222 n 129 ILE 222 A ILE 223 n 130 ILE 223 A ALA 224 n 131 ALA 224 A CYS 225 n 132 CYS 225 A GLY 226 n 133 GLY 226 A PHE 227 n 134 PHE 227 A ASP 228 n 135 ASP 228 A ILE 229 n 136 ILE 229 A ASN 230 n 137 ASN 230 A LYS 231 n 138 LYS 231 A THR 232 n 139 THR 232 A PHE 233 n 140 PHE 233 A ILE 234 n 141 ILE 234 A PHE 235 n 142 PHE 235 A SER 236 n 143 SER 236 A ASP 237 n 144 ASP 237 A LEU 238 n 145 LEU 238 A ASP 239 n 146 ASP 239 A TYR 240 n 147 TYR 240 A MET 241 n 148 MET 241 A GLY 242 n 149 GLY 242 A MET 243 n 150 MET 243 A SER 244 n 151 SER 244 A SER 245 n 152 SER 245 A GLY 246 n 153 GLY 246 A PHE 247 n 154 PHE 247 A TYR 248 n 155 TYR 248 A LYS 249 n 156 LYS 249 A ASN 250 n 157 ASN 250 A VAL 251 n 158 VAL 251 A VAL 252 n 159 VAL 252 A LYS 253 n 160 LYS 253 A ILE 254 n 161 ILE 254 A GLN 255 n 162 GLN 255 A LYS 256 n 163 LYS 256 A HIS 257 n 164 HIS 257 A VAL 258 n 165 VAL 258 A THR 259 n 166 THR 259 A PHE 260 n 167 PHE 260 A ASN 261 n 168 ASN 261 A GLN 262 n 169 GLN 262 A VAL 263 n 170 VAL 263 A LYS 264 n 171 LYS 264 A GLY 265 n 172 GLY 265 A ILE 266 n 173 ILE 266 A PHE 267 n 174 PHE 267 A GLY 268 n 175 GLY 268 A PHE 269 n 176 PHE 269 A THR 270 n 177 THR 270 A ASP 271 n 178 ASP 271 A SER 272 n 179 SER 272 A ASP 273 n 180 ASP 273 A CYS 274 n 181 CYS 274 A ILE 275 n 182 ILE 275 A GLY 276 n 183 GLY 276 A LYS 277 n 184 LYS 277 A ILE 278 n 185 ILE 278 A SER 279 n 186 SER 279 A PHE 280 n 187 PHE 280 A PRO 281 n 188 PRO 281 A ALA 282 n 189 ALA 282 A ILE 283 n 190 ILE 283 A GLN 284 n 191 GLN 284 A ALA 285 n 192 ALA 285 A ALA 286 n 193 ALA 286 A PRO 287 n 194 PRO 287 A SER 288 n 195 SER 288 A PHE 289 n 196 PHE 289 A SER 290 n 197 SER 290 A ASN 291 n 198 ASN 291 A SER 292 n 199 SER 292 A PHE 293 n 200 PHE 293 A PRO 294 n 201 PRO 294 A GLN 295 n 202 GLN 295 A ILE 296 n 203 ILE 296 A PHE 297 n 204 PHE 297 A ARG 298 n 205 ARG 298 A ASP 299 n 206 ASP 299 A ARG 300 n 207 ARG 300 A THR 301 n 208 THR 301 A ASP 302 n 209 ASP 302 A ILE 303 n 210 ILE 303 A GLN 304 n 211 GLN 304 A CYS 305 n 212 CYS 305 A LEU 306 n 213 LEU 306 A ILE 307 n 214 ILE 307 A PRO 308 n 215 PRO 308 A CYS 309 n 216 CYS 309 A ALA 310 n 217 ALA 310 A ILE 311 n 218 ILE 311 A ASP 312 n 219 ASP 312 A GLN 313 n 220 GLN 313 A ASP 314 n 221 ASP 314 A PRO 315 n 222 PRO 315 A TYR 316 n 223 TYR 316 A PHE 317 n 224 PHE 317 A ARG 318 n 225 ARG 318 A MET 319 n 226 MET 319 A THR 320 n 227 THR 320 A ARG 321 n 228 ARG 321 A ASP 322 n 229 ASP 322 A VAL 323 n 230 VAL 323 A ALA 324 n 231 ALA 324 A PRO 325 n 232 PRO 325 A ARG 326 n 233 ARG 326 A ILE 327 n 234 ILE 327 A GLY 328 n 235 GLY 328 A TYR 329 n 236 TYR 329 A PRO 330 n 237 PRO 330 A LYS 331 n 238 LYS 331 A PRO 332 n 239 PRO 332 A ALA 333 n 240 ALA 333 A LEU 334 n 241 LEU 334 A LEU 335 n 242 LEU 335 A HIS 336 n 243 HIS 336 A SER 337 n 244 SER 337 A THR 338 n 245 THR 338 A PHE 339 n 246 PHE 339 A PHE 340 n 247 PHE 340 A PRO 341 n 248 PRO 341 A ALA 342 n 249 ALA 342 A LEU 343 n 250 LEU 343 A GLN 344 n 251 GLN 344 A GLY 345 n 252 GLY 345 A ALA 346 n 253 ALA 346 A GLN 347 n 254 GLN 347 A THR 348 n 255 THR 348 A LYS 349 n 256 LYS 349 A MET 350 n 257 MET 350 A SER 351 n 258 SER 351 A ALA 352 n 259 ALA 352 A SER 353 n 260 SER 353 A ASP 354 n 261 ASP 354 A PRO 355 n 262 PRO 355 A ASN 356 n 263 ASN 356 A SER 357 n 264 SER 357 A SER 358 n 265 SER 358 A ILE 359 n 266 ILE 359 A PHE 360 n 267 PHE 360 A LEU 361 n 268 LEU 361 A THR 362 n 269 THR 362 A ASP 363 n 270 ASP 363 A THR 364 n 271 THR 364 A ALA 365 n 272 ALA 365 A LYS 366 n 273 LYS 366 A GLN 367 n 274 GLN 367 A ILE 368 n 275 ILE 368 A LYS 369 n 276 LYS 369 A THR 370 n 277 THR 370 A LYS 371 n 278 LYS 371 A VAL 372 n 279 VAL 372 A ASN 373 n 280 ASN 373 A LYS 374 n 281 LYS 374 A HIS 375 n 282 HIS 375 A ALA 376 n 283 ALA 376 A PHE 377 n 284 PHE 377 A SER 378 n 285 SER 378 A GLY 379 n 286 GLY 379 A GLY 380 n 287 GLY 380 A ARG 381 n 288 ARG 381 A ASP 382 n 289 ASP 382 A THR 383 n 290 THR 383 A ILE 384 n 291 ILE 384 A GLU 385 n 292 GLU 385 A GLU 386 n 293 GLU 386 A HIS 387 n 294 HIS 387 A ARG 388 n 295 ARG 388 A GLN 389 n 296 GLN 389 A PHE 390 n 297 PHE 390 A GLY 391 n 298 GLY 391 A GLY 392 n 299 GLY 392 A ASN 393 n 300 ASN 393 A CYS 394 n 301 CYS 394 A ASP 395 n 302 ASP 395 A VAL 396 n 303 VAL 396 A ASP 397 n 304 ASP 397 A VAL 398 n 305 VAL 398 A SER 399 n 306 SER 399 A PHE 400 n 307 PHE 400 A MET 401 n 308 MET 401 A TYR 402 n 309 TYR 402 A LEU 403 n 310 LEU 403 A THR 404 n 311 THR 404 A PHE 405 n 312 PHE 405 A PHE 406 n 313 PHE 406 A LEU 407 n 314 LEU 407 A GLU 408 n 315 GLU 408 A ASP 409 n 316 ASP 409 A ASP 410 n 317 ASP 410 A ASP 411 n 318 ASP 411 A LYS 412 n 319 LYS 412 A LEU 413 n 320 LEU 413 A GLU 414 n 321 GLU 414 A GLN 415 n 322 GLN 415 A ILE 416 n 323 ILE 416 A ARG 417 n 324 ARG 417 A LYS 418 n 325 LYS 418 A ASP 419 n 326 ASP 419 A TYR 420 n 327 TYR 420 A THR 421 n 328 THR 421 A SER 422 n 329 SER 422 A GLY 423 n 330 GLY 423 A ALA 424 n 331 ALA 424 A MET 425 n 332 MET 425 A LEU 426 n 333 LEU 426 A THR 427 n 334 THR 427 A GLY 428 n 335 GLY 428 A GLU 429 n 336 GLU 429 A LEU 430 n 337 LEU 430 A LYS 431 n 338 LYS 431 A LYS 432 n 339 LYS 432 A ALA 433 n 340 ALA 433 A LEU 434 n 341 LEU 434 A ILE 435 n 342 ILE 435 A GLU 436 n 343 GLU 436 A VAL 437 n 344 VAL 437 A LEU 438 n 345 LEU 438 A GLN 439 n 346 GLN 439 A PRO 440 n 347 PRO 440 A LEU 441 n 348 LEU 441 A ILE 442 n 349 ILE 442 A ALA 443 n 350 ALA 443 A GLU 444 n 351 GLU 444 A HIS 445 n 352 HIS 445 A GLN 446 n 353 GLN 446 A ALA 447 n 354 ALA 447 A ARG 448 n 355 ARG 448 A ARG 449 n 356 ARG 449 A LYS 450 n 357 LYS 450 A GLU 451 n 358 GLU 451 A VAL 452 n 359 VAL 452 A THR 453 n 360 THR 453 A ASP 454 n 361 ASP 454 A GLU 455 n 362 GLU 455 A ILE 456 n 363 ILE 456 A VAL 457 n 364 VAL 457 A LYS 458 n 365 LYS 458 A GLU 459 n 366 GLU 459 A PHE 460 n 367 PHE 460 A MET 461 n 368 MET 461 A THR 462 n 369 THR 462 A PRO 463 n 370 PRO 463 A ARG 464 n 371 ARG 464 A LYS 465 n 372 LYS 465 A LEU 466 n 373 LEU 466 A SER 467 n 374 SER 467 A PHE 468 n 375 PHE 468 A ASP 469 n 376 ASP 469 A PHE 470 n 377 PHE 470 A GLN 471 n 378 GLN 471 A author_and_software_defined_assembly PISA,PQS 2 dimeric 3030 -22 31460 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_543 x,x-y-1,-z-7/6 crystal symmetry operation 41.1200000000 -71.2219292072 -307.4866666667 A N SER 110 A N SER 17 A O HIS 140 A O HIS 47 A N ARG 141 A N ARG 48 A O LEU 334 A O LEU 241 A O LEU 335 A O LEU 242 A N CYS 309 A N CYS 216 A O LEU 306 A O LEU 213 A N TYR 157 A N TYR 64 A N ARG 162 A N ARG 69 A O GLN 194 A O GLN 101 A N MET 195 A N MET 102 A O PHE 235 A O PHE 142 1 A A O NH1 GLU ARG 459 464 2.19 1 A VAL 105 -78.69 -72.28 1 A PRO 164 -52.95 109.36 1 A SER 165 -115.57 -167.10 1 A ALA 168 -67.79 54.90 1 A LYS 231 -154.33 20.23 1 A MET 243 -144.70 55.27 1 A ILE 296 -137.08 -54.50 1 A ARG 298 16.56 91.85 1 A ASP 299 69.37 -29.26 1 A ARG 326 -47.58 -18.25 1 A GLN 347 75.54 50.99 1 A SER 351 173.01 175.51 1 A PRO 355 -52.90 -1.29 1 A LEU 361 -68.08 9.01 1 A ARG 381 -45.64 163.49 1 A LYS 450 -54.19 -5.54 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER_REP.TOP 65.0 7.10 9.78 0.00 7.10 0.00 -14.21 0.296 0.010 0.245 0.245 2.50 29.51 960 19164 18911 5.1 99.0 RANDOM 2193404.92 0.000000 1 RESTRAINED THROUGHOUT 0.0 MAD Engh & Huber FLAT MODEL 53.1418 0.321367 0.48 0.39 5.00 0.46 0.45 2.50 29.51 107 3163 0 0 3056 0.007 1.3 21.1 0.83 0.4043 0.3491 2.66 153 740 2989 6 4.6 0.3689 0.3238 2.86 148 3089 6 0.3398 0.3012 3.15 152 3134 6 0.3095 0.2863 3.61 154 3151 6 0.3011 0.2275 4.54 174 3213 6 0.2473 0.1931 29.51 179 3335 6 49.7 2.5 30 1O5T 19164 18911 -3 0.09 1 8.5 98.7 0.415 2.50 2.54 2 881 1 5 96.3 refinement CNS 1.1 data reduction HKL-2000 data scaling SCALEPACK phasing SOLVE Crystal structure of the aminoacylation catalytic fragment of human tryptophanyl-tRNA synthetase 1 N N 2 N N The enzyme forms a homodimer in both solution and crystal structure. The two subunits of the dimer are related by the crystallographic 2-fold axis. Therefore, there is one molecule per asymmetric unit. A LYS 102 A LYS 9 HELX_P A PHE 107 A PHE 14 1 1 6 A ASP 113 A ASP 20 HELX_P A GLY 125 A GLY 32 1 2 13 A HIS 129 A HIS 36 HELX_P A ARG 134 A ARG 41 1 3 6 A ASP 142 A ASP 49 HELX_P A ASN 152 A ASN 59 1 4 11 A HIS 170 A HIS 77 HELX_P A ASN 188 A ASN 95 1 5 19 A THR 196 A THR 103 HELX_P A LYS 204 A LYS 111 1 6 9 A THR 207 A THR 114 HELX_P A CYS 225 A CYS 132 1 7 19 A ASP 228 A ASP 135 HELX_P A ASN 230 A ASN 137 5 8 3 A ASP 237 A ASP 144 HELX_P A MET 241 A MET 148 1 9 5 A GLY 242 A GLY 149 HELX_P A SER 244 A SER 151 5 10 3 A GLY 246 A GLY 153 HELX_P A HIS 257 A HIS 164 1 11 12 A THR 259 A THR 166 HELX_P A GLY 268 A GLY 175 1 12 10 A CYS 274 A CYS 181 HELX_P A PHE 280 A PHE 187 1 13 7 A PHE 280 A PHE 187 HELX_P A ALA 286 A ALA 193 1 14 7 A PRO 287 A PRO 194 HELX_P A SER 292 A SER 199 5 15 6 A PHE 293 A PHE 200 HELX_P A ARG 298 A ARG 205 1 16 6 A GLN 313 A GLN 220 HELX_P A ILE 327 A ILE 234 1 17 15 A THR 364 A THR 271 HELX_P A ALA 376 A ALA 283 1 18 13 A THR 383 A THR 290 HELX_P A PHE 390 A PHE 297 1 19 8 A ASN 393 A ASN 300 HELX_P A VAL 396 A VAL 303 5 20 4 A ASP 397 A ASP 304 HELX_P A LEU 407 A LEU 314 1 21 11 A ASP 409 A ASP 316 HELX_P A GLY 423 A GLY 330 1 22 15 A LEU 426 A LEU 333 HELX_P A LYS 450 A LYS 357 1 23 25 A THR 453 A THR 360 HELX_P A MET 461 A MET 368 1 24 9 LIGASE Rossmann fold, four helix bundle, LIGASE SYW_HUMAN UNP 1 94 P23381 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ 94 471 1O5T 94 471 P23381 A 1 1 378 7 anti-parallel anti-parallel parallel parallel parallel parallel A SER 110 A SER 17 A LYS 111 A LYS 18 A SER 139 A SER 46 A ARG 141 A ARG 48 A ALA 333 A ALA 240 A SER 337 A SER 244 A CYS 305 A CYS 212 A ALA 310 A ALA 217 A TYR 157 A TYR 64 A ARG 162 A ARG 69 A LEU 191 A LEU 98 A MET 195 A MET 102 A THR 232 A THR 139 A SER 236 A SER 143 179 P 65 2 2