0.008725
0.000000
0.000000
0.000000
0.008191
0.000000
0.000000
0.000000
0.021288
0.00000
0.00000
0.00000
Ortiz-Lombardia, M.
Pompeo, F.
Boitel, B.
Alzari, P.M.
TB Structural Genomics Consortium (TBSGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
114.607
122.088
46.975
C11 H18 N5 O12 P3
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
C
N
9
R
P
N
10
N
O
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
C
N
15
R
C
N
16
N
O
N
17
S
C
N
18
N
O
N
19
R
C
N
20
N
O
N
21
R
C
Y
22
N
N
Y
23
N
C
Y
24
N
N
Y
25
N
C
Y
26
N
C
N
27
N
N
Y
28
N
N
Y
29
N
C
Y
30
N
N
Y
31
N
C
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
R
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
S
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
13094
10.1074/JBC.M300660200
12551895
Crystal Structure of the Catalytic Domain of the Pknb Serine/Threonine Kinase from Mycobacterium Tuberculosis
2003
10.2210/pdb1o6y/pdb
pdb_00001o6y
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2002-05-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
32458.506
SERINE/THREONINE-PROTEIN KINASE PKNB
2.7.11.1
CATALYTIC DOMAIN, RESIDUES 1-279
1
man
polymer
505.208
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
85
nat
water
PKNB
no
no
MGSSHHHHHHSSGLVPRGSHMTTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREA
QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK
PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS
PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG
MGSSHHHHHHSSGLVPRGSHMTTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREA
QNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK
PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS
PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
H37RV
sample
INSTITUT PASTEUR COLLECTION
83332
MYCOBACTERIUM TUBERCULOSIS
469008
ESCHERICHIA COLI
BL21(DE3)
PET28
1
2.22
44.17
VAPOR DIFFUSION, HANGING DROP
7.50
PROTEIN CRYSTALLIZED FROM 27% PEG 400, 4% 1,3-BUTANEDIOL, 100 MM HEPES, PH 7.5, 30 MM MGCL2 AT 19 DEGREES C
292
exptl_crystal_grow
pdbx_database_related
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Advisory
Version format compliance
Structure summary
Data collection
Experimental preparation
Data collection
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2003-01-30
1
1
2011-07-13
1
2
2017-05-24
1
3
2019-05-15
1
4
2019-08-21
1
5
2023-12-13
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_related.db_name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2002-10-21
REL
REL
ACP
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
MG
MAGNESIUM ION
HOH
water
RESIDUES IN THE N-TERMINAL TAG (1-22) ARE DISORDERED.
SIXTEEN RESIDUES (164-179) IN THE ACTIVATION LOOP ARE ALSO
DISORDERED.
1PHK
PDB ENTRY 1PHK
PDB
experimental model
ACP
1279
2
ACP
ACP
1279
A
MG
1280
3
MG
MG
1280
A
MG
1281
3
MG
MG
1281
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
THR
3
n
23
THR
3
A
PRO
4
n
24
PRO
4
A
SER
5
n
25
SER
5
A
HIS
6
n
26
HIS
6
A
LEU
7
n
27
LEU
7
A
SER
8
n
28
SER
8
A
ASP
9
n
29
ASP
9
A
ARG
10
n
30
ARG
10
A
TYR
11
n
31
TYR
11
A
GLU
12
n
32
GLU
12
A
LEU
13
n
33
LEU
13
A
GLY
14
n
34
GLY
14
A
GLU
15
n
35
GLU
15
A
ILE
16
n
36
ILE
16
A
LEU
17
n
37
LEU
17
A
GLY
18
n
38
GLY
18
A
PHE
19
n
39
PHE
19
A
GLY
20
n
40
GLY
20
A
GLY
21
n
41
GLY
21
A
MET
22
n
42
MET
22
A
SER
23
n
43
SER
23
A
GLU
24
n
44
GLU
24
A
VAL
25
n
45
VAL
25
A
HIS
26
n
46
HIS
26
A
LEU
27
n
47
LEU
27
A
ALA
28
n
48
ALA
28
A
ARG
29
n
49
ARG
29
A
ASP
30
n
50
ASP
30
A
LEU
31
n
51
LEU
31
A
ARG
32
n
52
ARG
32
A
LEU
33
n
53
LEU
33
A
HIS
34
n
54
HIS
34
A
ARG
35
n
55
ARG
35
A
ASP
36
n
56
ASP
36
A
VAL
37
n
57
VAL
37
A
ALA
38
n
58
ALA
38
A
VAL
39
n
59
VAL
39
A
LYS
40
n
60
LYS
40
A
VAL
41
n
61
VAL
41
A
LEU
42
n
62
LEU
42
A
ARG
43
n
63
ARG
43
A
ALA
44
n
64
ALA
44
A
ASP
45
n
65
ASP
45
A
LEU
46
n
66
LEU
46
A
ALA
47
n
67
ALA
47
A
ARG
48
n
68
ARG
48
A
ASP
49
n
69
ASP
49
A
PRO
50
n
70
PRO
50
A
SER
51
n
71
SER
51
A
PHE
52
n
72
PHE
52
A
TYR
53
n
73
TYR
53
A
LEU
54
n
74
LEU
54
A
ARG
55
n
75
ARG
55
A
PHE
56
n
76
PHE
56
A
ARG
57
n
77
ARG
57
A
ARG
58
n
78
ARG
58
A
GLU
59
n
79
GLU
59
A
ALA
60
n
80
ALA
60
A
GLN
61
n
81
GLN
61
A
ASN
62
n
82
ASN
62
A
ALA
63
n
83
ALA
63
A
ALA
64
n
84
ALA
64
A
ALA
65
n
85
ALA
65
A
LEU
66
n
86
LEU
66
A
ASN
67
n
87
ASN
67
A
HIS
68
n
88
HIS
68
A
PRO
69
n
89
PRO
69
A
ALA
70
n
90
ALA
70
A
ILE
71
n
91
ILE
71
A
VAL
72
n
92
VAL
72
A
ALA
73
n
93
ALA
73
A
VAL
74
n
94
VAL
74
A
TYR
75
n
95
TYR
75
A
ASP
76
n
96
ASP
76
A
THR
77
n
97
THR
77
A
GLY
78
n
98
GLY
78
A
GLU
79
n
99
GLU
79
A
ALA
80
n
100
ALA
80
A
GLU
81
n
101
GLU
81
A
THR
82
n
102
THR
82
A
PRO
83
n
103
PRO
83
A
ALA
84
n
104
ALA
84
A
GLY
85
n
105
GLY
85
A
PRO
86
n
106
PRO
86
A
LEU
87
n
107
LEU
87
A
PRO
88
n
108
PRO
88
A
TYR
89
n
109
TYR
89
A
ILE
90
n
110
ILE
90
A
VAL
91
n
111
VAL
91
A
MET
92
n
112
MET
92
A
GLU
93
n
113
GLU
93
A
TYR
94
n
114
TYR
94
A
VAL
95
n
115
VAL
95
A
ASP
96
n
116
ASP
96
A
GLY
97
n
117
GLY
97
A
VAL
98
n
118
VAL
98
A
THR
99
n
119
THR
99
A
LEU
100
n
120
LEU
100
A
ARG
101
n
121
ARG
101
A
ASP
102
n
122
ASP
102
A
ILE
103
n
123
ILE
103
A
VAL
104
n
124
VAL
104
A
HIS
105
n
125
HIS
105
A
THR
106
n
126
THR
106
A
GLU
107
n
127
GLU
107
A
GLY
108
n
128
GLY
108
A
PRO
109
n
129
PRO
109
A
MET
110
n
130
MET
110
A
THR
111
n
131
THR
111
A
PRO
112
n
132
PRO
112
A
LYS
113
n
133
LYS
113
A
ARG
114
n
134
ARG
114
A
ALA
115
n
135
ALA
115
A
ILE
116
n
136
ILE
116
A
GLU
117
n
137
GLU
117
A
VAL
118
n
138
VAL
118
A
ILE
119
n
139
ILE
119
A
ALA
120
n
140
ALA
120
A
ASP
121
n
141
ASP
121
A
ALA
122
n
142
ALA
122
A
CYS
123
n
143
CYS
123
A
GLN
124
n
144
GLN
124
A
ALA
125
n
145
ALA
125
A
LEU
126
n
146
LEU
126
A
ASN
127
n
147
ASN
127
A
PHE
128
n
148
PHE
128
A
SER
129
n
149
SER
129
A
HIS
130
n
150
HIS
130
A
GLN
131
n
151
GLN
131
A
ASN
132
n
152
ASN
132
A
GLY
133
n
153
GLY
133
A
ILE
134
n
154
ILE
134
A
ILE
135
n
155
ILE
135
A
HIS
136
n
156
HIS
136
A
ARG
137
n
157
ARG
137
A
ASP
138
n
158
ASP
138
A
VAL
139
n
159
VAL
139
A
LYS
140
n
160
LYS
140
A
PRO
141
n
161
PRO
141
A
ALA
142
n
162
ALA
142
A
ASN
143
n
163
ASN
143
A
ILE
144
n
164
ILE
144
A
MET
145
n
165
MET
145
A
ILE
146
n
166
ILE
146
A
SER
147
n
167
SER
147
A
ALA
148
n
168
ALA
148
A
THR
149
n
169
THR
149
A
ASN
150
n
170
ASN
150
A
ALA
151
n
171
ALA
151
A
VAL
152
n
172
VAL
152
A
LYS
153
n
173
LYS
153
A
VAL
154
n
174
VAL
154
A
MET
155
n
175
MET
155
A
ASP
156
n
176
ASP
156
A
PHE
157
n
177
PHE
157
A
GLY
158
n
178
GLY
158
A
ILE
159
n
179
ILE
159
A
ALA
160
n
180
ALA
160
A
ARG
161
n
181
ARG
161
A
ALA
162
n
182
ALA
162
A
ILE
163
n
183
ILE
163
A
n
184
164
A
n
185
165
A
n
186
166
A
n
187
167
A
n
188
168
A
n
189
169
A
n
190
170
A
n
191
171
A
n
192
172
A
n
193
173
A
n
194
174
A
n
195
175
A
n
196
176
A
n
197
177
A
n
198
178
A
n
199
179
A
ALA
180
n
200
ALA
180
A
GLN
181
n
201
GLN
181
A
TYR
182
n
202
TYR
182
A
LEU
183
n
203
LEU
183
A
SER
184
n
204
SER
184
A
PRO
185
n
205
PRO
185
A
GLU
186
n
206
GLU
186
A
GLN
187
n
207
GLN
187
A
ALA
188
n
208
ALA
188
A
ARG
189
n
209
ARG
189
A
GLY
190
n
210
GLY
190
A
ASP
191
n
211
ASP
191
A
SER
192
n
212
SER
192
A
VAL
193
n
213
VAL
193
A
ASP
194
n
214
ASP
194
A
ALA
195
n
215
ALA
195
A
ARG
196
n
216
ARG
196
A
SER
197
n
217
SER
197
A
ASP
198
n
218
ASP
198
A
VAL
199
n
219
VAL
199
A
TYR
200
n
220
TYR
200
A
SER
201
n
221
SER
201
A
LEU
202
n
222
LEU
202
A
GLY
203
n
223
GLY
203
A
CYS
204
n
224
CYS
204
A
VAL
205
n
225
VAL
205
A
LEU
206
n
226
LEU
206
A
TYR
207
n
227
TYR
207
A
GLU
208
n
228
GLU
208
A
VAL
209
n
229
VAL
209
A
LEU
210
n
230
LEU
210
A
THR
211
n
231
THR
211
A
GLY
212
n
232
GLY
212
A
GLU
213
n
233
GLU
213
A
PRO
214
n
234
PRO
214
A
PRO
215
n
235
PRO
215
A
PHE
216
n
236
PHE
216
A
THR
217
n
237
THR
217
A
GLY
218
n
238
GLY
218
A
ASP
219
n
239
ASP
219
A
SER
220
n
240
SER
220
A
PRO
221
n
241
PRO
221
A
VAL
222
n
242
VAL
222
A
SER
223
n
243
SER
223
A
VAL
224
n
244
VAL
224
A
ALA
225
n
245
ALA
225
A
TYR
226
n
246
TYR
226
A
GLN
227
n
247
GLN
227
A
HIS
228
n
248
HIS
228
A
VAL
229
n
249
VAL
229
A
ARG
230
n
250
ARG
230
A
GLU
231
n
251
GLU
231
A
ASP
232
n
252
ASP
232
A
PRO
233
n
253
PRO
233
A
ILE
234
n
254
ILE
234
A
PRO
235
n
255
PRO
235
A
PRO
236
n
256
PRO
236
A
SER
237
n
257
SER
237
A
ALA
238
n
258
ALA
238
A
ARG
239
n
259
ARG
239
A
HIS
240
n
260
HIS
240
A
GLU
241
n
261
GLU
241
A
GLY
242
n
262
GLY
242
A
LEU
243
n
263
LEU
243
A
SER
244
n
264
SER
244
A
ALA
245
n
265
ALA
245
A
ASP
246
n
266
ASP
246
A
LEU
247
n
267
LEU
247
A
ASP
248
n
268
ASP
248
A
ALA
249
n
269
ALA
249
A
VAL
250
n
270
VAL
250
A
VAL
251
n
271
VAL
251
A
LEU
252
n
272
LEU
252
A
LYS
253
n
273
LYS
253
A
ALA
254
n
274
ALA
254
A
LEU
255
n
275
LEU
255
A
ALA
256
n
276
ALA
256
A
LYS
257
n
277
LYS
257
A
ASN
258
n
278
ASN
258
A
PRO
259
n
279
PRO
259
A
GLU
260
n
280
GLU
260
A
ASN
261
n
281
ASN
261
A
ARG
262
n
282
ARG
262
A
TYR
263
n
283
TYR
263
A
GLN
264
n
284
GLN
264
A
THR
265
n
285
THR
265
A
ALA
266
n
286
ALA
266
A
ALA
267
n
287
ALA
267
A
GLU
268
n
288
GLU
268
A
MET
269
n
289
MET
269
A
ARG
270
n
290
ARG
270
A
ALA
271
n
291
ALA
271
A
ASP
272
n
292
ASP
272
A
LEU
273
n
293
LEU
273
A
VAL
274
n
294
VAL
274
A
ARG
275
n
295
ARG
275
A
VAL
276
n
296
VAL
276
A
HIS
277
n
297
HIS
277
A
ASN
278
n
298
ASN
278
A
n
299
279
A
3.8276
-0.2260
-1.3476
5.3644
-0.1798
4.6566
-0.0976
0.0133
0.2779
0.0536
-0.0422
1.0543
-0.3597
-0.7030
0.1398
0.1144
0.0375
-0.0341
0.1231
-0.0621
0.2822
refined
75.1064
71.5977
25.0741
X-RAY DIFFRACTION
5.7436
1.2839
-1.0752
4.6718
0.0242
3.1234
0.1102
-0.0903
0.3283
-0.0189
-0.0667
-0.0839
-0.1283
0.1966
-0.0435
0.0724
0.0385
0.0134
0.0675
0.0251
0.0148
refined
99.2916
81.3507
17.4130
X-RAY DIFFRACTION
14.0382
-16.6443
26.0424
40.4748
-30.5662
25.4652
0.0025
-0.4727
0.6087
0.4572
0.4664
-0.5314
-0.6783
-0.7214
-0.4688
0.0398
0.0676
-0.0245
0.1537
-0.0466
0.1226
refined
83.0089
77.9436
25.8829
X-RAY DIFFRACTION
A
3
A
97
X-RAY DIFFRACTION
1
A
98
A
278
X-RAY DIFFRACTION
2
A
1279
A
1279
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
1
monomeric
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
A
ASP
156
A
OD1
ASP
176
1_555
90.1
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
A
ACP
1279
B
O1A
ACP
1_555
90.2
A
ASP
156
A
OD1
ASP
176
1_555
A
MG
1280
C
MG
MG
1_555
A
ACP
1279
B
O1A
ACP
1_555
99.3
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
A
ACP
1279
B
O1B
ACP
1_555
176.7
A
ASP
156
A
OD1
ASP
176
1_555
A
MG
1280
C
MG
MG
1_555
A
ACP
1279
B
O1B
ACP
1_555
88.3
A
ACP
1279
B
O1A
ACP
1_555
A
MG
1280
C
MG
MG
1_555
A
ACP
1279
B
O1B
ACP
1_555
92.9
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2079
E
O
HOH
1_555
81.7
A
ASP
156
A
OD1
ASP
176
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2079
E
O
HOH
1_555
169.5
A
ACP
1279
B
O1A
ACP
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2079
E
O
HOH
1_555
87.4
A
ACP
1279
B
O1B
ACP
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2079
E
O
HOH
1_555
99.6
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
89.1
A
ASP
156
A
OD1
ASP
176
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
90.8
A
ACP
1279
B
O1A
ACP
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
169.8
A
ACP
1279
B
O1B
ACP
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
88.0
A
HOH
2079
E
O
HOH
1_555
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
82.4
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
ACP
1279
B
O1G
ACP
1_555
92.6
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2054
E
O
HOH
1_555
90.4
A
ACP
1279
B
O1G
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2054
E
O
HOH
1_555
174.8
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2055
E
O
HOH
1_555
93.5
A
ACP
1279
B
O1G
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2055
E
O
HOH
1_555
97.1
A
HOH
2054
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2055
E
O
HOH
1_555
87.0
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2081
E
O
HOH
1_555
84.1
A
ACP
1279
B
O1G
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2081
E
O
HOH
1_555
79.8
A
HOH
2054
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2081
E
O
HOH
1_555
96.3
A
HOH
2055
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2081
E
O
HOH
1_555
175.9
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
176.6
A
ACP
1279
B
O1G
ACP
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
85.8
A
HOH
2054
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
91.0
A
HOH
2055
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
89.7
A
HOH
2081
E
O
HOH
1_555
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
92.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
7
A
N
LEU
27
A
O
TYR
11
A
O
TYR
31
A
N
LEU
17
A
N
LEU
37
A
O
VAL
25
A
O
VAL
45
A
N
ASP
30
A
N
ASP
50
A
O
ARG
35
A
O
ARG
55
A
N
LEU
42
A
N
LEU
62
A
O
PRO
88
A
O
PRO
108
A
O
VAL
91
A
O
VAL
111
A
N
TYR
75
A
N
TYR
95
A
N
VAL
98
A
N
VAL
118
A
O
ILE
146
A
O
ILE
166
A
N
MET
145
A
N
MET
165
A
O
LYS
153
A
O
LYS
173
A
N
ILE
135
A
N
ILE
155
A
O
ARG
161
A
O
ARG
181
1
A
OE1
GLU
15
A
OE1
GLU
35
1
Y
1
A
OE2
GLU
15
A
OE2
GLU
35
1
Y
1
A
CD1
TYR
53
A
CD1
TYR
73
1
Y
1
A
CD2
TYR
53
A
CD2
TYR
73
1
Y
1
A
CE1
TYR
53
A
CE1
TYR
73
1
Y
1
A
CE2
TYR
53
A
CE2
TYR
73
1
Y
1
A
CZ
TYR
53
A
CZ
TYR
73
1
Y
1
A
OH
TYR
53
A
OH
TYR
73
1
Y
1
A
CD1
LEU
54
A
CD1
LEU
74
1
Y
1
A
CD2
LEU
54
A
CD2
LEU
74
1
Y
1
A
CD
ARG
55
A
CD
ARG
75
1
Y
1
A
NE
ARG
55
A
NE
ARG
75
1
Y
1
A
CZ
ARG
55
A
CZ
ARG
75
1
Y
1
A
NH1
ARG
55
A
NH1
ARG
75
1
Y
1
A
NH2
ARG
55
A
NH2
ARG
75
1
Y
1
A
NE
ARG
57
A
NE
ARG
77
1
Y
1
A
CZ
ARG
57
A
CZ
ARG
77
1
Y
1
A
NH1
ARG
57
A
NH1
ARG
77
1
Y
1
A
NH2
ARG
57
A
NH2
ARG
77
1
Y
1
A
NE
ARG
58
A
NE
ARG
78
1
Y
1
A
CZ
ARG
58
A
CZ
ARG
78
1
Y
1
A
NH1
ARG
58
A
NH1
ARG
78
1
Y
1
A
NH2
ARG
58
A
NH2
ARG
78
1
Y
1
A
CD
GLU
79
A
CD
GLU
99
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
99
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
99
1
Y
1
A
CG
GLU
81
A
CG
GLU
101
1
Y
1
A
CD
GLU
81
A
CD
GLU
101
1
Y
1
A
OE1
GLU
81
A
OE1
GLU
101
1
Y
1
A
OE2
GLU
81
A
OE2
GLU
101
1
Y
1
A
OE1
GLU
107
A
OE1
GLU
127
1
Y
1
A
OE2
GLU
107
A
OE2
GLU
127
1
Y
1
A
CD
LYS
113
A
CD
LYS
133
1
Y
1
A
CE
LYS
113
A
CE
LYS
133
1
Y
1
A
NZ
LYS
113
A
NZ
LYS
133
1
Y
1
A
NZ
LYS
140
A
NZ
LYS
160
1
Y
1
A
CD
ARG
161
A
CD
ARG
181
1
Y
1
A
NE
ARG
161
A
NE
ARG
181
1
Y
1
A
CZ
ARG
161
A
CZ
ARG
181
1
Y
1
A
NH1
ARG
161
A
NH1
ARG
181
1
Y
1
A
NH2
ARG
161
A
NH2
ARG
181
1
Y
1
A
CB
ASP
219
A
CB
ASP
239
1
Y
1
A
CG
ASP
219
A
CG
ASP
239
1
Y
1
A
OD1
ASP
219
A
OD1
ASP
239
1
Y
1
A
OD2
ASP
219
A
OD2
ASP
239
1
Y
1
A
OE1
GLU
231
A
OE1
GLU
251
1
Y
1
A
OE2
GLU
231
A
OE2
GLU
251
1
Y
1
A
CG
GLU
241
A
CG
GLU
261
1
Y
1
A
CD
GLU
241
A
CD
GLU
261
1
Y
1
A
OE1
GLU
241
A
OE1
GLU
261
1
Y
1
A
OE2
GLU
241
A
OE2
GLU
261
1
Y
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
THR
2
A
THR
22
1
Y
1
A
ALA
164
A
ALA
184
1
Y
1
A
ASP
165
A
ASP
185
1
Y
1
A
SER
166
A
SER
186
1
Y
1
A
GLY
167
A
GLY
187
1
Y
1
A
ASN
168
A
ASN
188
1
Y
1
A
SER
169
A
SER
189
1
Y
1
A
VAL
170
A
VAL
190
1
Y
1
A
THR
171
A
THR
191
1
Y
1
A
GLN
172
A
GLN
192
1
Y
1
A
THR
173
A
THR
193
1
Y
1
A
ALA
174
A
ALA
194
1
Y
1
A
ALA
175
A
ALA
195
1
Y
1
A
VAL
176
A
VAL
196
1
Y
1
A
ILE
177
A
ILE
197
1
Y
1
A
GLY
178
A
GLY
198
1
Y
1
A
THR
179
A
THR
199
1
Y
1
A
GLY
279
A
GLY
299
1
Y
1
A
A
NH1
O
ARG
HOH
230
2062
1.98
1
5.53
0.90
118.30
123.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
156
156
156
N
1
5.55
0.90
118.30
123.85
A
A
A
CB
CG
OD2
ASP
ASP
ASP
248
248
248
N
1
A
A
CG
CD1
TYR
TYR
226
226
0.094
0.013
1.387
1.481
N
1
A
ARG
10
-139.63
-43.48
1
A
ALA
44
91.31
-49.09
1
A
ARG
137
71.79
-5.94
1
A
ASP
156
67.82
83.57
1
A
ALA
160
-49.34
150.02
1
A
ASP
191
-66.36
-177.24
27.841
-0.52
0.00
0.00
-3.59
0.00
4.11
0.957
0.936
0.2303
0.1909
0.1927
2.20
61.0
848
16292
5.0
99.73
5.608
0.141
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.217
0.184
0.80
0.80
1.40
PDB ENTRY 1PHK
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.20
61.0
85
2071
33
0
1953
0.017
0.021
2026
1.623
1.972
2767
4.192
5.000
258
0.115
0.200
320
0.007
0.020
1541
0.205
0.200
840
0.142
0.200
115
0.062
0.200
2
0.209
0.200
26
0.279
0.200
11
0.790
1.500
1299
1.406
2.000
2090
2.533
3.000
727
3.763
4.500
677
0.301
0.220
2.257
59
1195
20
37
2.200
60.860
1O6Y
17152
0.07900
1
6.7000
8.000
99.8
0.56000
2.20
2.32
1.300
1
8.10
99.8
refinement
REFMAC
5.1.19
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
Catalytic domain of PknB kinase from Mycobacterium tuberculosis
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
ASP
49
A
ASP
69
HELX_P
A
ALA
65
A
ALA
85
1
1
17
A
LEU
100
A
LEU
120
HELX_P
A
GLY
108
A
GLY
128
1
2
9
A
THR
111
A
THR
131
HELX_P
A
ASN
132
A
ASN
152
1
3
22
A
LYS
140
A
LYS
160
HELX_P
A
ALA
142
A
ALA
162
5
4
3
A
SER
184
A
SER
204
HELX_P
A
ARG
189
A
ARG
209
1
5
6
A
ASP
194
A
ASP
214
HELX_P
A
GLY
212
A
GLY
232
1
6
19
A
SER
220
A
SER
240
HELX_P
A
GLU
231
A
GLU
251
1
7
12
A
PRO
235
A
PRO
255
HELX_P
A
ARG
239
A
ARG
259
5
8
5
A
SER
244
A
SER
264
HELX_P
A
LEU
255
A
LEU
275
1
9
12
A
ASN
258
A
ASN
278
HELX_P
A
ARG
262
A
ARG
282
5
10
5
A
THR
265
A
THR
285
HELX_P
A
ASN
278
A
ASN
298
1
11
14
metalc
2.270
A
ASN
143
A
OD1
ASN
163
1_555
A
MG
1280
C
MG
MG
1_555
metalc
2.120
A
ASP
156
A
OD1
ASP
176
1_555
A
MG
1280
C
MG
MG
1_555
metalc
2.017
A
ACP
1279
B
O1A
ACP
1_555
A
MG
1280
C
MG
MG
1_555
metalc
2.093
A
ACP
1279
B
O1B
ACP
1_555
A
MG
1280
C
MG
MG
1_555
metalc
1.938
A
ACP
1279
B
O2B
ACP
1_555
A
MG
1281
D
MG
MG
1_555
metalc
2.081
A
ACP
1279
B
O1G
ACP
1_555
A
MG
1281
D
MG
MG
1_555
metalc
2.125
A
MG
1280
C
MG
MG
1_555
A
HOH
2079
E
O
HOH
1_555
metalc
2.025
A
MG
1280
C
MG
MG
1_555
A
HOH
2080
E
O
HOH
1_555
metalc
1.919
A
MG
1281
D
MG
MG
1_555
A
HOH
2054
E
O
HOH
1_555
metalc
2.120
A
MG
1281
D
MG
MG
1_555
A
HOH
2055
E
O
HOH
1_555
metalc
2.057
A
MG
1281
D
MG
MG
1_555
A
HOH
2081
E
O
HOH
1_555
metalc
2.069
A
MG
1281
D
MG
MG
1_555
A
HOH
2082
E
O
HOH
1_555
TRANSFERASE
SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TB, TBSGC
PKNB_MYCTU
UNP
1
P0A5S4
1
279
1O6Y
1
279
P0A5S4
A
1
21
299
1
expression tag
MET
-19
1O6Y
A
P0A5S4
UNP
1
1
expression tag
GLY
-18
1O6Y
A
P0A5S4
UNP
2
1
expression tag
SER
-17
1O6Y
A
P0A5S4
UNP
3
1
expression tag
SER
-16
1O6Y
A
P0A5S4
UNP
4
1
expression tag
HIS
-15
1O6Y
A
P0A5S4
UNP
5
1
expression tag
HIS
-14
1O6Y
A
P0A5S4
UNP
6
1
expression tag
HIS
-13
1O6Y
A
P0A5S4
UNP
7
1
expression tag
HIS
-12
1O6Y
A
P0A5S4
UNP
8
1
expression tag
HIS
-11
1O6Y
A
P0A5S4
UNP
9
1
expression tag
HIS
-10
1O6Y
A
P0A5S4
UNP
10
1
expression tag
SER
-9
1O6Y
A
P0A5S4
UNP
11
1
expression tag
SER
-8
1O6Y
A
P0A5S4
UNP
12
1
expression tag
GLY
-7
1O6Y
A
P0A5S4
UNP
13
1
expression tag
LEU
-6
1O6Y
A
P0A5S4
UNP
14
1
expression tag
VAL
-5
1O6Y
A
P0A5S4
UNP
15
1
expression tag
PRO
-4
1O6Y
A
P0A5S4
UNP
16
1
expression tag
ARG
-3
1O6Y
A
P0A5S4
UNP
17
1
expression tag
GLY
-2
1O6Y
A
P0A5S4
UNP
18
1
expression tag
SER
-1
1O6Y
A
P0A5S4
UNP
19
1
expression tag
HIS
0
1O6Y
A
P0A5S4
UNP
20
6
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
6
A
HIS
26
A
LEU
7
A
LEU
27
A
TYR
11
A
TYR
31
A
PHE
19
A
PHE
39
A
SER
23
A
SER
43
A
ASP
30
A
ASP
50
A
ARG
35
A
ARG
55
A
LEU
42
A
LEU
62
A
PRO
86
A
PRO
106
A
GLU
93
A
GLU
113
A
VAL
74
A
VAL
94
A
GLU
81
A
GLU
101
A
GLY
97
A
GLY
117
A
THR
99
A
THR
119
A
ILE
144
A
ILE
164
A
SER
147
A
SER
167
A
VAL
152
A
VAL
172
A
VAL
154
A
VAL
174
A
ILE
134
A
ILE
154
A
ILE
135
A
ILE
155
A
ARG
161
A
ARG
181
A
ALA
162
A
ALA
182
BINDING SITE FOR RESIDUE MG A 1280
A
MG
1280
Software
5
BINDING SITE FOR RESIDUE MG A 1281
A
MG
1281
Software
6
BINDING SITE FOR RESIDUE ACP A 1279
A
ACP
1279
Software
24
A
ASN
143
A
ASN
163
5
1_555
A
ASP
156
A
ASP
176
5
1_555
A
ACP
1279
B
ACP
5
1_555
A
HOH
2079
E
HOH
5
1_555
A
HOH
2080
E
HOH
5
1_555
A
LYS
40
A
LYS
60
6
1_555
A
ACP
1279
B
ACP
6
1_555
A
HOH
2054
E
HOH
6
1_555
A
HOH
2055
E
HOH
6
1_555
A
HOH
2081
E
HOH
6
1_555
A
HOH
2082
E
HOH
6
1_555
A
GLY
18
A
GLY
38
24
1_555
A
GLY
20
A
GLY
40
24
1_555
A
GLY
21
A
GLY
41
24
1_555
A
MET
22
A
MET
42
24
1_555
A
SER
23
A
SER
43
24
1_555
A
ALA
38
A
ALA
58
24
1_555
A
LYS
40
A
LYS
60
24
1_555
A
VAL
72
A
VAL
92
24
1_555
A
GLU
93
A
GLU
113
24
1_555
A
VAL
95
A
VAL
115
24
1_555
A
THR
99
A
THR
119
24
1_555
A
ALA
142
A
ALA
162
24
1_555
A
ASN
143
A
ASN
163
24
1_555
A
ASP
156
A
ASP
176
24
1_555
A
MG
1280
C
MG
24
1_555
A
MG
1281
D
MG
24
1_555
A
HOH
2054
E
HOH
24
1_555
A
HOH
2055
E
HOH
24
1_555
A
HOH
2079
E
HOH
24
1_555
A
HOH
2080
E
HOH
24
1_555
A
HOH
2081
E
HOH
24
1_555
A
HOH
2082
E
HOH
24
1_555
A
HOH
2083
E
HOH
24
1_555
A
HOH
2084
E
HOH
24
1_555
20
C 2 2 21