1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Jank, M.M. Sadowsky, J.D. Peikert, C. Berger, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Int.J.Biol.Macromol. IJBMDR 0708 0141-8130 30 233 10.1016/S0141-8130(02)00033-8 12297230 NMR Studies on the Solution Structure of a Deletion Mutant of the Transcarboxylase Biotin Carrier Subunit 2002 US Biochemistry BICHAW 0033 0006-2960 39 2509 10.1021/BI9925367 10704200 High Resolution Solution Structure of the 1.3S Subunit of Transcarboxylase from Propionibacterium Shermanii(Dagger) 2000 US Protein Expr.Purif. PEXPEJ 0757 1046-5928 17 123 10.1006/PREP.1999.1097 10497077 Expression and Biotinylation of a Mutant of the Transcarboxylase Carrier Protein from Propioni Shermanii 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 RESIDUES 10-48 DELETION MUTANT 8667.160 BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA CARBOXYL-TRANSFERASE YES 1 man polymer TRANSCARBOXYLASE, 1.3S SUBUNIT no no MKLKVTVNGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGL IKIG MKLKVTVNGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGL IKIG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1752 PROPIONIBACTERIUM FREUDENREICHII SUBSP. SHERMANII 562 ESCHERICHIA COLI PLASMID PTAC1.3DELTA10-48, PCY216 repository Initial release Version format compliance Version format compliance 1 0 2002-11-21 1 1 2011-05-08 1 2 2011-07-13 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) PDBE Y PDBE 2002-10-24 REL BIOTINYL 1.3S SUBUNIT (CHAIN A) SERVES AS A CARBOXYL CARRIER BETWEEN THE SUBSTRATE BINDING SITES ON THE 12S AND 5S SUBUNITS. TRANSCARBOXYLASE IS COMPRISED OF THREE SUBUNITS: 1.3S, 5S, AND 12S. RESIDUES 10-48 DELETION MUTANT, CHAIN A RESIDUES 10-48 DELETION MUTANT THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN. BIOTIN WAS UNLABELED AND NOT INCLUDED IN THE STRUCTURE CALCULATION. LEAST RESTRAINT VIOLATION 600 20 15N-HSQC-NOESY HNCA HNCO CBCANH CBCA(CO)NH HN(CA)CO HCACO HN-HSQC-TOCSY HBHA(CBCACO)NH (H)N(CA)NNH HCCH-TOCSY 2D 15N-1H HSQC 2 MM AMMONIUM ACETATE 4.5 pH 1 atm 300 K DGSA, REFINEMENT WITH NOES AND HYDROGEN-BOND CONSTRAINTS DISTANCE GEOMETRY/ SIMULATED ANNEALING 3 2.3 MM PROTEIN, N15/C13 LABELED TC 1.3S [10-48], BIOTIN (UNLABELED) COVALENTLY ATTACHED TO LYS 89 BRUNGER refinement X-PLOR 3.1 structure solution X-PLOR structure solution PROCHECK 3.5.3 structure solution AQUA 2.0 600 Bruker DRX MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LEU 3 n 3 LEU 3 A LYS 4 n 4 LYS 4 A VAL 5 n 5 VAL 5 A THR 6 n 6 THR 6 A VAL 7 n 7 VAL 7 A ASN 8 n 8 ASN 8 A GLY 9 n 9 GLY 9 A ALA 10 n 10 ALA 10 A GLY 11 n 11 GLY 11 A LYS 12 n 12 LYS 12 A ALA 13 n 13 ALA 13 A GLY 14 n 14 GLY 14 A GLU 15 n 15 GLU 15 A GLY 16 n 16 GLY 16 A GLU 17 n 17 GLU 17 A ILE 18 n 18 ILE 18 A PRO 19 n 19 PRO 19 A ALA 20 n 20 ALA 20 A PRO 21 n 21 PRO 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A GLY 24 n 24 GLY 24 A THR 25 n 25 THR 25 A VAL 26 n 26 VAL 26 A SER 27 n 27 SER 27 A LYS 28 n 28 LYS 28 A ILE 29 n 29 ILE 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A LYS 32 n 32 LYS 32 A GLU 33 n 33 GLU 33 A GLY 34 n 34 GLY 34 A ASP 35 n 35 ASP 35 A THR 36 n 36 THR 36 A VAL 37 n 37 VAL 37 A LYS 38 n 38 LYS 38 A ALA 39 n 39 ALA 39 A GLY 40 n 40 GLY 40 A GLN 41 n 41 GLN 41 A THR 42 n 42 THR 42 A VAL 43 n 43 VAL 43 A LEU 44 n 44 LEU 44 A VAL 45 n 45 VAL 45 A LEU 46 n 46 LEU 46 A GLU 47 n 47 GLU 47 A ALA 48 n 48 ALA 48 A MET 49 n 49 MET 49 A LYS 50 n 50 LYS 50 A MET 51 n 51 MET 51 A GLU 52 n 52 GLU 52 A THR 53 n 53 THR 53 A GLU 54 n 54 GLU 54 A ILE 55 n 55 ILE 55 A ASN 56 n 56 ASN 56 A ALA 57 n 57 ALA 57 A PRO 58 n 58 PRO 58 A THR 59 n 59 THR 59 A ASP 60 n 60 ASP 60 A GLY 61 n 61 GLY 61 A LYS 62 n 62 LYS 62 A VAL 63 n 63 VAL 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A VAL 68 n 68 VAL 68 A LYS 69 n 69 LYS 69 A GLU 70 n 70 GLU 70 A ARG 71 n 71 ARG 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A VAL 74 n 74 VAL 74 A GLN 75 n 75 GLN 75 A GLY 76 n 76 GLY 76 A GLY 77 n 77 GLY 77 A GLN 78 n 78 GLN 78 A GLY 79 n 79 GLY 79 A LEU 80 n 80 LEU 80 A ILE 81 n 81 ILE 81 A LYS 82 n 82 LYS 82 A ILE 83 n 83 ILE 83 A GLY 84 n 84 GLY 84 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 28 A O LYS 28 A N VAL 45 A N VAL 45 A N VAL 43 A N VAL 43 A O ILE 55 A O ILE 55 A N VAL 37 A N VAL 37 A O GLY 61 A O GLY 61 A N GLU 64 A N GLU 64 A O LYS 82 A O LYS 82 4 A A O H ILE LEU 18 80 1.59 5 A A O HG VAL SER 26 27 1.54 10 A A O H ILE LEU 18 80 1.59 1 A ARG 71 0.187 SIDE CHAIN 2 A ARG 71 0.313 SIDE CHAIN 3 A ARG 71 0.204 SIDE CHAIN 4 A ARG 71 0.236 SIDE CHAIN 5 A ARG 71 0.249 SIDE CHAIN 6 A ARG 71 0.269 SIDE CHAIN 7 A ARG 71 0.244 SIDE CHAIN 8 A ARG 71 0.314 SIDE CHAIN 9 A ARG 71 0.236 SIDE CHAIN 10 A ARG 71 0.210 SIDE CHAIN 11 A ARG 71 0.210 SIDE CHAIN 12 A ARG 71 0.249 SIDE CHAIN 13 A ARG 71 0.205 SIDE CHAIN 14 A ARG 71 0.305 SIDE CHAIN 15 A ARG 71 0.203 SIDE CHAIN 16 A ARG 71 0.195 SIDE CHAIN 17 A ARG 71 0.207 SIDE CHAIN 18 A ARG 71 0.172 SIDE CHAIN 19 A ARG 71 0.236 SIDE CHAIN 20 A ARG 71 0.278 SIDE CHAIN 1 A THR 6 59.06 159.55 1 A LEU 22 -151.84 -49.13 1 A LYS 28 -174.00 133.81 1 A GLU 33 59.77 145.68 1 A THR 42 -52.10 95.69 1 A LEU 44 -167.11 -160.01 1 A GLU 47 -161.79 100.14 1 A MET 49 -149.88 49.57 1 A MET 51 -152.33 27.32 1 A GLU 52 -143.06 -81.47 1 A THR 53 51.92 -152.44 1 A GLU 54 -54.25 109.77 1 A LYS 65 179.17 137.47 1 A VAL 74 36.84 56.58 2 A LYS 4 53.81 -178.13 2 A THR 6 -127.66 -70.25 2 A ALA 10 51.38 84.10 2 A ALA 13 -110.71 -168.63 2 A LEU 22 -171.54 59.09 2 A ALA 23 49.87 -167.88 2 A THR 42 -59.05 104.59 2 A LYS 65 178.44 117.49 2 A ARG 71 177.83 -45.49 2 A VAL 74 56.44 164.41 2 A GLN 75 57.44 111.88 2 A LEU 80 -135.50 -65.90 3 A LYS 2 -98.33 59.67 3 A LEU 3 -162.25 -50.45 3 A THR 6 -159.54 31.20 3 A ASN 8 54.83 77.56 3 A ALA 10 -120.51 -55.13 3 A LYS 28 -172.69 126.71 3 A LYS 32 -145.35 46.01 3 A GLU 33 59.82 155.65 3 A ALA 39 -59.95 109.94 3 A THR 42 -54.42 94.63 3 A GLU 47 52.82 -176.38 3 A ALA 48 -163.30 -62.60 3 A MET 51 -175.79 117.90 3 A GLU 52 -53.12 94.99 3 A ILE 55 -68.85 91.19 3 A LYS 65 179.24 89.27 4 A LYS 4 -132.18 -54.33 4 A VAL 5 61.14 137.72 4 A THR 6 -99.14 37.36 4 A LYS 12 54.39 177.80 4 A ALA 13 -120.54 -168.86 4 A ALA 23 49.91 -154.62 4 A THR 42 -55.68 102.73 4 A ALA 48 -125.07 -157.92 4 A MET 51 57.30 105.30 4 A GLU 52 57.16 74.31 4 A LYS 65 -179.09 131.15 4 A LEU 67 -125.12 -58.45 4 A GLU 70 -63.79 80.29 4 A ARG 71 -176.88 -47.05 4 A VAL 74 36.60 42.74 4 A LEU 80 -55.73 -79.96 5 A ALA 10 54.65 -160.99 5 A LYS 12 55.24 -88.42 5 A GLU 15 -59.17 107.57 5 A LEU 22 -142.18 33.20 5 A ALA 23 49.89 -157.55 5 A THR 25 -110.23 -146.83 5 A VAL 31 -98.98 -158.03 5 A MET 49 59.04 -83.29 5 A THR 53 61.00 -74.74 5 A GLU 54 -56.08 90.77 5 A LYS 65 179.69 138.08 5 A LEU 67 -126.36 -67.44 5 A ALA 73 61.82 142.82 5 A VAL 74 34.53 89.93 5 A ILE 81 -175.67 143.37 6 A THR 6 37.99 30.53 6 A ALA 10 53.81 -175.63 6 A ALA 23 -58.74 178.35 6 A VAL 26 -50.28 100.59 6 A THR 42 -57.19 101.29 6 A ALA 48 -129.36 -80.34 6 A GLU 52 -57.59 109.11 6 A LYS 65 179.36 156.61 6 A VAL 68 -46.70 153.82 6 A GLU 70 61.27 143.45 6 A ASP 72 -154.53 42.62 6 A GLN 75 54.12 100.06 7 A LEU 3 51.87 87.00 7 A VAL 7 57.75 160.90 7 A ALA 10 -71.16 -158.81 7 A ALA 13 -62.00 -155.12 7 A VAL 26 -47.38 168.17 7 A SER 27 -149.69 -42.19 7 A LYS 28 -160.24 119.42 7 A LYS 32 -121.38 -162.58 7 A ALA 48 -166.64 -157.24 7 A MET 51 56.33 19.57 7 A GLU 52 179.49 96.45 7 A LYS 65 -177.86 139.56 7 A ILE 83 -148.85 44.82 8 A LEU 3 -160.44 54.06 8 A VAL 5 -54.07 170.13 8 A THR 6 53.99 99.95 8 A VAL 7 -119.70 75.38 8 A ALA 10 -57.09 178.91 8 A GLU 17 -57.23 -175.46 8 A ALA 23 -57.32 178.78 8 A LYS 28 -172.84 139.94 8 A MET 51 54.63 75.52 8 A THR 53 56.81 -83.80 8 A GLU 54 -58.46 97.60 8 A THR 59 -165.69 -159.41 8 A LYS 65 179.99 174.71 8 A ASP 72 -112.95 67.55 8 A ALA 73 -59.35 173.30 8 A VAL 74 53.55 86.46 8 A LEU 80 -96.57 -68.57 9 A LYS 2 62.94 -72.62 9 A ASN 8 -59.54 -166.20 9 A LYS 12 53.73 176.80 9 A ALA 23 -53.66 174.97 9 A LYS 32 -155.93 39.17 9 A GLU 33 61.21 142.32 9 A THR 36 -57.61 178.22 9 A GLU 47 -168.13 109.38 9 A ALA 48 -168.30 -165.32 9 A THR 53 36.50 -127.61 9 A GLU 54 -37.69 133.79 9 A LYS 65 179.86 163.60 9 A ALA 73 60.73 117.17 10 A LYS 4 -106.63 63.30 10 A THR 6 -153.85 38.40 10 A ASN 8 -122.23 -61.08 10 A ALA 10 52.95 -172.65 10 A ALA 13 -175.27 -150.35 10 A ALA 23 51.68 -150.32 10 A VAL 31 -101.91 -158.07 10 A GLU 47 -154.47 72.60 10 A ALA 48 -114.04 69.70 10 A MET 49 59.00 16.64 10 A THR 53 52.10 -92.28 10 A GLU 54 -59.90 105.63 10 A ALA 57 -53.43 175.30 10 A THR 59 -163.42 -167.66 10 A LYS 65 178.19 157.30 10 A LEU 67 -56.06 -70.37 10 A LEU 80 -67.90 -70.44 11 A LYS 4 54.91 -88.92 11 A ALA 23 53.11 178.70 11 A VAL 31 -131.52 -115.47 11 A GLU 33 -170.05 103.41 11 A VAL 37 -67.04 -171.79 11 A ALA 39 -62.15 93.39 11 A THR 42 -52.22 109.80 11 A ALA 48 -179.32 139.68 11 A MET 49 54.50 78.32 11 A THR 53 65.70 -64.99 11 A GLU 54 -56.57 98.83 11 A LYS 65 179.97 149.26 11 A LEU 67 -138.27 -68.52 11 A VAL 68 -48.55 155.12 11 A GLU 70 -68.00 72.69 11 A ARG 71 -176.79 -37.30 11 A VAL 74 36.91 48.02 11 A LEU 80 -109.18 -68.75 12 A ASN 8 -102.52 43.99 12 A LYS 12 -162.56 -38.92 12 A ALA 13 55.12 -166.24 12 A THR 25 -68.32 -141.99 12 A LYS 28 -54.95 108.39 12 A ALA 39 -69.12 99.58 12 A THR 42 -55.25 105.12 12 A ALA 48 -176.42 -69.21 12 A ALA 57 -50.77 170.09 12 A LYS 65 178.50 169.06 12 A LEU 67 -129.88 -52.62 12 A GLU 70 61.61 135.79 12 A VAL 74 60.86 139.71 12 A GLN 75 -177.04 43.61 13 A LYS 4 -143.20 -155.94 13 A THR 6 -161.78 -40.55 13 A ASN 8 -160.45 -50.32 13 A ALA 10 -120.13 -60.63 13 A LYS 12 -98.09 -74.21 13 A ALA 13 53.73 79.97 13 A THR 42 -53.19 94.06 13 A MET 49 -96.78 42.41 13 A GLU 52 -56.91 102.21 13 A LYS 65 -178.31 140.43 13 A GLU 70 61.97 135.94 14 A LYS 4 59.94 155.11 14 A ASN 8 -164.05 37.36 14 A LEU 22 61.52 127.96 14 A ALA 23 -56.93 170.59 14 A LYS 28 -171.93 122.80 14 A THR 42 -56.60 109.91 14 A LYS 50 -168.91 -56.28 14 A MET 51 174.44 -73.41 14 A GLU 52 54.08 -92.48 14 A THR 53 51.67 -89.78 14 A LYS 69 -129.69 -165.73 14 A LEU 80 -92.21 -70.05 15 A LYS 2 52.74 -166.35 15 A LEU 3 -168.18 51.55 15 A THR 6 44.26 -153.86 15 A ALA 10 -109.21 42.48 15 A LEU 22 53.36 -166.87 15 A LYS 28 -175.52 140.78 15 A LYS 32 -145.93 52.43 15 A GLU 33 59.85 157.62 15 A LYS 38 -142.70 49.58 15 A ALA 39 54.75 93.08 15 A GLU 52 55.33 100.25 15 A LYS 65 179.83 156.06 15 A LYS 69 -125.73 -164.87 15 A ALA 73 56.33 111.12 15 A LEU 80 -107.64 -61.01 16 A LYS 4 -144.85 24.51 16 A VAL 7 -165.22 58.29 16 A ALA 10 55.71 -174.95 16 A LYS 12 56.36 70.93 16 A ALA 13 50.50 -164.27 16 A THR 25 -122.99 -133.34 16 A LYS 28 -51.93 94.71 16 A ILE 29 -68.09 86.74 16 A GLU 52 53.17 88.62 16 A LYS 65 -174.84 148.14 16 A LEU 67 -130.97 -53.31 16 A GLU 70 61.95 132.39 17 A LYS 2 -62.27 -170.91 17 A THR 6 52.93 82.33 17 A ASN 8 -50.38 96.52 17 A LYS 12 54.00 -160.02 17 A ALA 13 -79.90 -161.45 17 A GLU 15 53.65 79.03 17 A ALA 20 -113.25 74.34 17 A ALA 23 55.01 -174.16 17 A ALA 39 -58.90 103.78 17 A ALA 48 -167.93 73.81 17 A LYS 50 -160.73 29.59 17 A MET 51 57.04 -85.67 17 A GLU 52 62.86 -77.15 17 A THR 53 44.77 -92.92 17 A GLU 54 -52.14 104.62 17 A THR 59 -170.62 -171.86 17 A LYS 65 177.24 161.10 17 A ARG 71 74.09 -42.63 17 A ALA 73 -165.12 -156.83 17 A VAL 74 57.40 115.85 17 A GLN 75 51.88 93.25 17 A LEU 80 -91.51 -70.76 17 A ILE 83 -150.18 22.06 18 A LEU 3 -125.07 -60.13 18 A VAL 7 60.05 151.11 18 A ASN 8 53.35 75.76 18 A MET 49 51.56 90.56 18 A MET 51 65.58 -63.28 18 A GLU 52 67.76 -65.15 18 A THR 53 52.45 -103.46 18 A LYS 65 179.55 166.64 18 A ARG 71 -176.92 -36.73 18 A ASP 72 -51.96 107.84 18 A VAL 74 57.43 113.17 18 A GLN 75 -153.68 -77.30 19 A VAL 7 -117.10 -77.09 19 A LYS 12 57.38 164.92 19 A ALA 13 -92.53 -155.95 19 A SER 27 -134.98 -39.52 19 A THR 42 -53.57 100.93 19 A ALA 48 -126.21 -156.45 19 A MET 49 -92.73 39.82 19 A LYS 50 -153.04 -47.03 19 A MET 51 -170.27 -173.93 19 A LYS 65 178.19 107.14 19 A GLU 70 -68.99 68.10 19 A ARG 71 -173.62 -42.79 19 A VAL 74 36.22 68.82 19 A LEU 80 -102.15 -71.52 20 A LEU 3 -66.51 93.87 20 A ALA 10 -71.93 -168.39 20 A LEU 22 -155.26 -53.08 20 A LYS 32 -165.78 -45.91 20 A GLU 33 179.00 109.62 20 A ALA 48 -128.02 -160.24 20 A GLU 52 -154.10 73.37 20 A THR 53 66.84 -59.96 20 A ALA 57 -47.84 166.21 20 A LYS 65 176.87 164.65 20 A GLU 70 -65.65 76.50 20 A ARG 71 179.90 -51.30 20 A VAL 74 36.73 49.60 20 A GLN 75 -154.03 85.75 20 A LEU 80 -131.84 -58.02 BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA CARBOXYL-TRANSFERASE Biotin carboxyl carrier domain of transcarboxylase (1.3S) [10-48] deletion mutant 1 N N CARRIER PROTEIN CARRIER PROTEIN, TRANSCARBOXYLASE, CARBOXYL CARRIER, TRANSFERASE BCCP_PROFR UNP 1 P02904 1 9 1O78 1 9 P02904 A 1 1 9 49 123 1O78 10 84 P02904 A 1 10 84 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A LYS 28 A LYS 28 A ILE 29 A ILE 29 A THR 42 A THR 42 A VAL 45 A VAL 45 A ILE 55 A ILE 55 A ASN 56 A ASN 56 A THR 36 A THR 36 A VAL 37 A VAL 37 A GLY 61 A GLY 61 A VAL 66 A VAL 66 A ILE 81 A ILE 81 A ILE 83 A ILE 83 1 P 1