0.017963 0.000000 0.000000 0.000000 0.017963 0.000000 0.000000 0.000000 0.004963 0.00000 0.00000 0.00000 Sulzenbacher, G. Roig-Zamboni, V. Pagot, F. Grisel, S. Salamoni, A. Valencia, C. Bignon, C. Vincentelli, R. Tegoni, M. Cambillau, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 55.671 55.671 201.480 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 60 1855 10.1107/S0907444904020220 15388933 Structure of the Escherichia Coli Yhdh, a Putative Quinone Oxidoreductase 2004 10.2210/pdb1o89/pdb pdb_00001o89 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2002-03-08 ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9340 1.0 ID14-1 ESRF 0.9340 SYNCHROTRON ESRF BEAMLINE ID14-1 37294.473 YHDH 1 man polymer 18.015 water 52 nat water B3253, YHDH no no MSYYHHHHHHLESTSLYKKAGLQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPM IPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALE DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTV GDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEIS LSEAPNFAEAIINNQIQGRTLVKVN MSYYHHHHHHLESTSLYKKAGLQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPM IPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALE DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTV GDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEIS LSEAPNFAEAIINNQIQGRTLVKVN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K-12 sample 83333 ESCHERICHIA COLI 511693 ESCHERICHIA COLI BL21 PDEST17 1 2.5 50.0 7.50 39 % PEG 600, 0.1 M HEPES PH 7.5 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Other Refinement description 1 0 2004-02-26 1 1 2011-05-08 1 2 2011-07-13 1 3 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf CRYSTAL STRUCTURE OF E. COLI K-12 YHDH WITH BOUND NADPH SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2002-11-26 REL REL HOH water THIS ENTRY IS FROM A STRUCTURAL GENOMICS EXPERIMENT, POSSIBLY A NADPH-DEPENDENT QUINONE OXIDOREDUCTASE RESIDUES -20 TO 0 AND 10 TO 12 MISSING FROM DECK OF COORDINATES. RESIDUES -20 TO 0 ARE FROM THE EXPRESSION TAG AT THE N-TERMINUS YHDH DETERMINED BY MAD Other experimental model HOH 2001 2 HOH HOH 2001 A HOH 2002 2 HOH HOH 2002 A HOH 2003 2 HOH HOH 2003 A HOH 2004 2 HOH HOH 2004 A HOH 2005 2 HOH HOH 2005 A HOH 2006 2 HOH HOH 2006 A HOH 2007 2 HOH HOH 2007 A HOH 2008 2 HOH HOH 2008 A HOH 2009 2 HOH HOH 2009 A HOH 2010 2 HOH HOH 2010 A HOH 2011 2 HOH HOH 2011 A HOH 2012 2 HOH HOH 2012 A HOH 2013 2 HOH HOH 2013 A HOH 2014 2 HOH HOH 2014 A HOH 2015 2 HOH HOH 2015 A HOH 2016 2 HOH HOH 2016 A HOH 2017 2 HOH HOH 2017 A HOH 2018 2 HOH HOH 2018 A HOH 2019 2 HOH HOH 2019 A HOH 2020 2 HOH HOH 2020 A HOH 2021 2 HOH HOH 2021 A HOH 2022 2 HOH HOH 2022 A HOH 2023 2 HOH HOH 2023 A HOH 2024 2 HOH HOH 2024 A HOH 2025 2 HOH HOH 2025 A HOH 2026 2 HOH HOH 2026 A HOH 2027 2 HOH HOH 2027 A HOH 2028 2 HOH HOH 2028 A HOH 2029 2 HOH HOH 2029 A HOH 2030 2 HOH HOH 2030 A HOH 2031 2 HOH HOH 2031 A HOH 2032 2 HOH HOH 2032 A HOH 2033 2 HOH HOH 2033 A HOH 2034 2 HOH HOH 2034 A HOH 2035 2 HOH HOH 2035 A HOH 2036 2 HOH HOH 2036 A HOH 2037 2 HOH HOH 2037 A HOH 2038 2 HOH HOH 2038 A HOH 2039 2 HOH HOH 2039 A HOH 2040 2 HOH HOH 2040 A HOH 2041 2 HOH HOH 2041 A HOH 2042 2 HOH HOH 2042 A HOH 2043 2 HOH HOH 2043 A HOH 2044 2 HOH HOH 2044 A HOH 2045 2 HOH HOH 2045 A HOH 2046 2 HOH HOH 2046 A HOH 2047 2 HOH HOH 2047 A HOH 2048 2 HOH HOH 2048 A HOH 2049 2 HOH HOH 2049 A HOH 2050 2 HOH HOH 2050 A HOH 2051 2 HOH HOH 2051 A HOH 2052 2 HOH HOH 2052 A n 1 -20 A n 2 -19 A n 3 -18 A n 4 -17 A n 5 -16 A n 6 -15 A n 7 -14 A n 8 -13 A n 9 -12 A n 10 -11 A n 11 -10 A n 12 -9 A n 13 -8 A n 14 -7 A n 15 -6 A n 16 -5 A n 17 -4 A n 18 -3 A n 19 -2 A n 20 -1 A n 21 0 A LEU 1 n 22 LEU 1 A GLN 2 n 23 GLN 2 A ALA 3 n 24 ALA 3 A LEU 4 n 25 LEU 4 A LEU 5 n 26 LEU 5 A LEU 6 n 27 LEU 6 A GLU 7 n 28 GLU 7 A GLN 8 n 29 GLN 8 A GLN 9 n 30 GLN 9 A n 31 10 A n 32 11 A n 33 12 A THR 13 n 34 THR 13 A LEU 14 n 35 LEU 14 A ALA 15 n 36 ALA 15 A SER 16 n 37 SER 16 A VAL 17 n 38 VAL 17 A GLN 18 n 39 GLN 18 A THR 19 n 40 THR 19 A LEU 20 n 41 LEU 20 A ASP 21 n 42 ASP 21 A GLU 22 n 43 GLU 22 A SER 23 n 44 SER 23 A ARG 24 n 45 ARG 24 A LEU 25 n 46 LEU 25 A PRO 26 n 47 PRO 26 A GLU 27 n 48 GLU 27 A GLY 28 n 49 GLY 28 A ASP 29 n 50 ASP 29 A VAL 30 n 51 VAL 30 A THR 31 n 52 THR 31 A VAL 32 n 53 VAL 32 A ASP 33 n 54 ASP 33 A VAL 34 n 55 VAL 34 A HIS 35 n 56 HIS 35 A TRP 36 n 57 TRP 36 A SER 37 n 58 SER 37 A SER 38 n 59 SER 38 A LEU 39 n 60 LEU 39 A ASN 40 n 61 ASN 40 A TYR 41 n 62 TYR 41 A LYS 42 n 63 LYS 42 A ASP 43 n 64 ASP 43 A ALA 44 n 65 ALA 44 A LEU 45 n 66 LEU 45 A ALA 46 n 67 ALA 46 A ILE 47 n 68 ILE 47 A THR 48 n 69 THR 48 A GLY 49 n 70 GLY 49 A LYS 50 n 71 LYS 50 A GLY 51 n 72 GLY 51 A LYS 52 n 73 LYS 52 A ILE 53 n 74 ILE 53 A ILE 54 n 75 ILE 54 A ARG 55 n 76 ARG 55 A ASN 56 n 77 ASN 56 A PHE 57 n 78 PHE 57 A PRO 58 n 79 PRO 58 A MET 59 n 80 MET 59 A ILE 60 n 81 ILE 60 A PRO 61 n 82 PRO 61 A GLY 62 n 83 GLY 62 A ILE 63 n 84 ILE 63 A ASP 64 n 85 ASP 64 A PHE 65 n 86 PHE 65 A ALA 66 n 87 ALA 66 A GLY 67 n 88 GLY 67 A THR 68 n 89 THR 68 A VAL 69 n 90 VAL 69 A ARG 70 n 91 ARG 70 A THR 71 n 92 THR 71 A SER 72 n 93 SER 72 A GLU 73 n 94 GLU 73 A ASP 74 n 95 ASP 74 A PRO 75 n 96 PRO 75 A ARG 76 n 97 ARG 76 A PHE 77 n 98 PHE 77 A HIS 78 n 99 HIS 78 A ALA 79 n 100 ALA 79 A GLY 80 n 101 GLY 80 A GLN 81 n 102 GLN 81 A GLU 82 n 103 GLU 82 A VAL 83 n 104 VAL 83 A LEU 84 n 105 LEU 84 A LEU 85 n 106 LEU 85 A THR 86 n 107 THR 86 A GLY 87 n 108 GLY 87 A TRP 88 n 109 TRP 88 A GLY 89 n 110 GLY 89 A VAL 90 n 111 VAL 90 A GLY 91 n 112 GLY 91 A GLU 92 n 113 GLU 92 A ASN 93 n 114 ASN 93 A HIS 94 n 115 HIS 94 A TRP 95 n 116 TRP 95 A GLY 96 n 117 GLY 96 A GLY 97 n 118 GLY 97 A LEU 98 n 119 LEU 98 A ALA 99 n 120 ALA 99 A GLU 100 n 121 GLU 100 A GLN 101 n 122 GLN 101 A ALA 102 n 123 ALA 102 A ARG 103 n 124 ARG 103 A VAL 104 n 125 VAL 104 A LYS 105 n 126 LYS 105 A GLY 106 n 127 GLY 106 A ASP 107 n 128 ASP 107 A TRP 108 n 129 TRP 108 A LEU 109 n 130 LEU 109 A VAL 110 n 131 VAL 110 A ALA 111 n 132 ALA 111 A MET 112 n 133 MET 112 A PRO 113 n 134 PRO 113 A GLN 114 n 135 GLN 114 A GLY 115 n 136 GLY 115 A LEU 116 n 137 LEU 116 A ASP 117 n 138 ASP 117 A ALA 118 n 139 ALA 118 A ARG 119 n 140 ARG 119 A LYS 120 n 141 LYS 120 A ALA 121 n 142 ALA 121 A MET 122 n 143 MET 122 A ILE 123 n 144 ILE 123 A ILE 124 n 145 ILE 124 A GLY 125 n 146 GLY 125 A THR 126 n 147 THR 126 A ALA 127 n 148 ALA 127 A GLY 128 n 149 GLY 128 A PHE 129 n 150 PHE 129 A THR 130 n 151 THR 130 A ALA 131 n 152 ALA 131 A MET 132 n 153 MET 132 A LEU 133 n 154 LEU 133 A CYS 134 n 155 CYS 134 A VAL 135 n 156 VAL 135 A MET 136 n 157 MET 136 A ALA 137 n 158 ALA 137 A LEU 138 n 159 LEU 138 A GLU 139 n 160 GLU 139 A ASP 140 n 161 ASP 140 A ALA 141 n 162 ALA 141 A GLY 142 n 163 GLY 142 A VAL 143 n 164 VAL 143 A ARG 144 n 165 ARG 144 A PRO 145 n 166 PRO 145 A GLN 146 n 167 GLN 146 A ASP 147 n 168 ASP 147 A GLY 148 n 169 GLY 148 A GLU 149 n 170 GLU 149 A ILE 150 n 171 ILE 150 A VAL 151 n 172 VAL 151 A VAL 152 n 173 VAL 152 A THR 153 n 174 THR 153 A GLY 154 n 175 GLY 154 A ALA 155 n 176 ALA 155 A SER 156 n 177 SER 156 A GLY 157 n 178 GLY 157 A GLY 158 n 179 GLY 158 A VAL 159 n 180 VAL 159 A GLY 160 n 181 GLY 160 A SER 161 n 182 SER 161 A THR 162 n 183 THR 162 A ALA 163 n 184 ALA 163 A VAL 164 n 185 VAL 164 A ALA 165 n 186 ALA 165 A LEU 166 n 187 LEU 166 A LEU 167 n 188 LEU 167 A HIS 168 n 189 HIS 168 A LYS 169 n 190 LYS 169 A LEU 170 n 191 LEU 170 A GLY 171 n 192 GLY 171 A TYR 172 n 193 TYR 172 A GLN 173 n 194 GLN 173 A VAL 174 n 195 VAL 174 A VAL 175 n 196 VAL 175 A ALA 176 n 197 ALA 176 A VAL 177 n 198 VAL 177 A SER 178 n 199 SER 178 A GLY 179 n 200 GLY 179 A ARG 180 n 201 ARG 180 A GLU 181 n 202 GLU 181 A SER 182 n 203 SER 182 A THR 183 n 204 THR 183 A HIS 184 n 205 HIS 184 A GLU 185 n 206 GLU 185 A TYR 186 n 207 TYR 186 A LEU 187 n 208 LEU 187 A LYS 188 n 209 LYS 188 A SER 189 n 210 SER 189 A LEU 190 n 211 LEU 190 A GLY 191 n 212 GLY 191 A ALA 192 n 213 ALA 192 A SER 193 n 214 SER 193 A ARG 194 n 215 ARG 194 A VAL 195 n 216 VAL 195 A LEU 196 n 217 LEU 196 A PRO 197 n 218 PRO 197 A ARG 198 n 219 ARG 198 A ASP 199 n 220 ASP 199 A GLU 200 n 221 GLU 200 A PHE 201 n 222 PHE 201 A ALA 202 n 223 ALA 202 A GLU 203 n 224 GLU 203 A SER 204 n 225 SER 204 A ARG 205 n 226 ARG 205 A PRO 206 n 227 PRO 206 A LEU 207 n 228 LEU 207 A GLU 208 n 229 GLU 208 A LYS 209 n 230 LYS 209 A GLN 210 n 231 GLN 210 A VAL 211 n 232 VAL 211 A TRP 212 n 233 TRP 212 A ALA 213 n 234 ALA 213 A GLY 214 n 235 GLY 214 A ALA 215 n 236 ALA 215 A ILE 216 n 237 ILE 216 A ASP 217 n 238 ASP 217 A THR 218 n 239 THR 218 A VAL 219 n 240 VAL 219 A GLY 220 n 241 GLY 220 A ASP 221 n 242 ASP 221 A LYS 222 n 243 LYS 222 A VAL 223 n 244 VAL 223 A LEU 224 n 245 LEU 224 A ALA 225 n 246 ALA 225 A LYS 226 n 247 LYS 226 A VAL 227 n 248 VAL 227 A LEU 228 n 249 LEU 228 A ALA 229 n 250 ALA 229 A GLN 230 n 251 GLN 230 A MET 231 n 252 MET 231 A ASN 232 n 253 ASN 232 A TYR 233 n 254 TYR 233 A GLY 234 n 255 GLY 234 A GLY 235 n 256 GLY 235 A CYS 236 n 257 CYS 236 A VAL 237 n 258 VAL 237 A ALA 238 n 259 ALA 238 A ALA 239 n 260 ALA 239 A CYS 240 n 261 CYS 240 A GLY 241 n 262 GLY 241 A LEU 242 n 263 LEU 242 A ALA 243 n 264 ALA 243 A GLY 244 n 265 GLY 244 A GLY 245 n 266 GLY 245 A PHE 246 n 267 PHE 246 A THR 247 n 268 THR 247 A LEU 248 n 269 LEU 248 A PRO 249 n 270 PRO 249 A THR 250 n 271 THR 250 A THR 251 n 272 THR 251 A VAL 252 n 273 VAL 252 A MET 253 n 274 MET 253 A PRO 254 n 275 PRO 254 A PHE 255 n 276 PHE 255 A ILE 256 n 277 ILE 256 A LEU 257 n 278 LEU 257 A ARG 258 n 279 ARG 258 A ASN 259 n 280 ASN 259 A VAL 260 n 281 VAL 260 A ARG 261 n 282 ARG 261 A LEU 262 n 283 LEU 262 A GLN 263 n 284 GLN 263 A GLY 264 n 285 GLY 264 A VAL 265 n 286 VAL 265 A ASP 266 n 287 ASP 266 A SER 267 n 288 SER 267 A VAL 268 n 289 VAL 268 A MET 269 n 290 MET 269 A THR 270 n 291 THR 270 A PRO 271 n 292 PRO 271 A PRO 272 n 293 PRO 272 A GLU 273 n 294 GLU 273 A ARG 274 n 295 ARG 274 A ARG 275 n 296 ARG 275 A ALA 276 n 297 ALA 276 A GLN 277 n 298 GLN 277 A ALA 278 n 299 ALA 278 A TRP 279 n 300 TRP 279 A GLN 280 n 301 GLN 280 A ARG 281 n 302 ARG 281 A LEU 282 n 303 LEU 282 A VAL 283 n 304 VAL 283 A ALA 284 n 305 ALA 284 A ASP 285 n 306 ASP 285 A LEU 286 n 307 LEU 286 A PRO 287 n 308 PRO 287 A GLU 288 n 309 GLU 288 A SER 289 n 310 SER 289 A PHE 290 n 311 PHE 290 A TYR 291 n 312 TYR 291 A THR 292 n 313 THR 292 A GLN 293 n 314 GLN 293 A ALA 294 n 315 ALA 294 A ALA 295 n 316 ALA 295 A LYS 296 n 317 LYS 296 A GLU 297 n 318 GLU 297 A ILE 298 n 319 ILE 298 A SER 299 n 320 SER 299 A LEU 300 n 321 LEU 300 A SER 301 n 322 SER 301 A GLU 302 n 323 GLU 302 A ALA 303 n 324 ALA 303 A PRO 304 n 325 PRO 304 A ASN 305 n 326 ASN 305 A PHE 306 n 327 PHE 306 A ALA 307 n 328 ALA 307 A GLU 308 n 329 GLU 308 A ALA 309 n 330 ALA 309 A ILE 310 n 331 ILE 310 A ILE 311 n 332 ILE 311 A ASN 312 n 333 ASN 312 A ASN 313 n 334 ASN 313 A GLN 314 n 335 GLN 314 A ILE 315 n 336 ILE 315 A GLN 316 n 337 GLN 316 A GLY 317 n 338 GLY 317 A ARG 318 n 339 ARG 318 A THR 319 n 340 THR 319 A LEU 320 n 341 LEU 320 A VAL 321 n 342 VAL 321 A LYS 322 n 343 LYS 322 A VAL 323 n 344 VAL 323 A n 345 324 A author_and_software_defined_assembly PQS 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z+1/4 crystal symmetry operation 0.0000000000 0.0000000000 50.3700000000 A N GLU 7 A N GLU 28 A O LEU 14 A O LEU 35 A N VAL 104 A N VAL 125 A O VAL 30 A O VAL 51 A N SER 38 A N SER 59 A O ASP 64 A O ASP 85 A N GLY 67 A N GLY 88 A O VAL 83 A O VAL 104 A N LEU 84 A N LEU 105 A O VAL 110 A O VAL 131 A N VAL 104 A N VAL 125 A O VAL 30 A O VAL 51 A N SER 37 A N SER 58 A O VAL 321 A O VAL 342 A N LEU 320 A N LEU 341 A O LYS 296 A O LYS 317 A N SER 193 A N SER 214 A O VAL 174 A O VAL 195 A N VAL 175 A N VAL 196 A O ILE 150 A O ILE 171 A O GLU 149 A O GLU 170 A N ALA 213 A N ALA 234 A O TRP 212 A O TRP 233 A N ASN 232 A N ASN 253 A N VAL 237 A N VAL 258 A O ARG 261 A O ARG 282 1 A CG GLN 9 A CG GLN 30 1 Y 1 A CD GLN 9 A CD GLN 30 1 Y 1 A OE1 GLN 9 A OE1 GLN 30 1 Y 1 A NE2 GLN 9 A NE2 GLN 30 1 Y 1 A MET -20 A MET 1 1 Y 1 A SER -19 A SER 2 1 Y 1 A TYR -18 A TYR 3 1 Y 1 A TYR -17 A TYR 4 1 Y 1 A HIS -16 A HIS 5 1 Y 1 A HIS -15 A HIS 6 1 Y 1 A HIS -14 A HIS 7 1 Y 1 A HIS -13 A HIS 8 1 Y 1 A HIS -12 A HIS 9 1 Y 1 A HIS -11 A HIS 10 1 Y 1 A LEU -10 A LEU 11 1 Y 1 A GLU -9 A GLU 12 1 Y 1 A SER -8 A SER 13 1 Y 1 A THR -7 A THR 14 1 Y 1 A SER -6 A SER 15 1 Y 1 A LEU -5 A LEU 16 1 Y 1 A TYR -4 A TYR 17 1 Y 1 A LYS -3 A LYS 18 1 Y 1 A LYS -2 A LYS 19 1 Y 1 A ALA -1 A ALA 20 1 Y 1 A GLY 0 A GLY 21 1 Y 1 A ASP 10 A ASP 31 1 Y 1 A GLY 11 A GLY 32 1 Y 1 A LYS 12 A LYS 33 1 Y 1 A ASN 324 A ASN 345 1 Y 1 5.49 0.90 118.30 123.79 A A A CB CG OD2 ASP ASP ASP 43 43 43 N 1 5.43 0.90 118.30 123.73 A A A CB CG OD2 ASP ASP ASP 199 199 199 N 1 A SER 37 -132.47 -154.78 1 A LYS 52 -164.06 56.33 1 A GLU 92 -120.08 -63.15 1 A PHE 201 -105.72 63.69 1 A ALA 202 -119.56 -113.07 1 A ASP 221 59.41 -136.75 1 A LEU 242 -150.08 29.49 1 A THR 250 -121.03 -169.38 1 A ASN 313 63.86 80.12 0.05 0.00 0.00 0.05 0.00 -0.11 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.23669 0.19703 0.20087 2.25 12.0 1550 14074 9.9 99.01 6.426 0.160 RANDOM 1 THROUGHOUT FOURIER SYNTHESIS 0.351 0.231 YHDH DETERMINED BY MAD 2.25 12.0 52 2458 0 0 2406 50.08 2.250 19.700 1O89 15661 0.04900 1 11.7000 8.600 99.1 0.42500 2.25 2.31 1.800 1 8.90 99.7 refinement REFMAC data reduction DENZO data scaling SCALA Crystal structure of E. COLI K-12 yhdH 1 N N 2 N N A ASP 21 A ASP 42 HELX_P A LEU 25 A LEU 46 5 1 5 A ASN 40 A ASN 61 HELX_P A GLY 49 A GLY 70 1 2 10 A LYS 105 A LYS 126 HELX_P A LEU 109 A LEU 130 5 3 5 A ASP 117 A ASP 138 HELX_P A ALA 141 A ALA 162 1 4 25 A ARG 144 A ARG 165 HELX_P A GLY 148 A GLY 169 5 5 5 A GLY 157 A GLY 178 HELX_P A LEU 170 A LEU 191 1 6 14 A ARG 180 A ARG 201 HELX_P A SER 182 A SER 203 5 7 3 A THR 183 A THR 204 HELX_P A GLY 191 A GLY 212 1 8 9 A ASP 199 A ASP 220 HELX_P A PHE 201 A PHE 222 5 9 3 A GLY 220 A GLY 241 HELX_P A GLN 230 A GLN 251 1 10 11 A VAL 252 A VAL 273 HELX_P A ASN 259 A ASN 280 1 11 8 A PRO 271 A PRO 292 HELX_P A LEU 286 A LEU 307 1 12 16 A PRO 287 A PRO 308 HELX_P A THR 292 A THR 313 1 13 6 A GLU 302 A GLU 323 HELX_P A ASN 312 A ASN 333 1 14 11 STRUCTURAL GENOMICS, UNKNOWN FUNCTION STRUCTURAL GENOMICS, UNKNOWN FUNCTION, POSSIBLE NADPH-DEPENDENT QUINONE OXIDOREDUCTASE A PHE 57 A PHE 78 1 A PRO 58 A PRO 79 3.61 1O89 PDB 1 1O89 YHDH_ECOLI UNP 1 P26646 -20 1 1O89 -20 1 1O89 A 1 1 22 2 324 1O89 2 324 P26646 A 2 23 345 2 5 4 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel parallel A GLN 2 A GLN 23 A GLU 7 A GLU 28 A LEU 14 A LEU 35 A THR 19 A THR 40 A GLN 101 A GLN 122 A VAL 104 A VAL 125 A VAL 30 A VAL 51 A SER 38 A SER 59 A ASP 64 A ASP 85 A SER 72 A SER 93 A GLU 82 A GLU 103 A THR 86 A THR 107 A VAL 110 A VAL 131 A ALA 111 A ALA 132 A GLN 101 A GLN 122 A VAL 104 A VAL 125 A VAL 30 A VAL 51 A SER 38 A SER 59 A THR 319 A THR 340 A LYS 322 A LYS 343 A LYS 296 A LYS 317 A ILE 298 A ILE 319 A ALA 192 A ALA 213 A PRO 197 A PRO 218 A VAL 174 A VAL 195 A SER 178 A SER 199 A GLU 149 A GLU 170 A VAL 152 A VAL 173 A TRP 212 A TRP 233 A ASP 217 A ASP 238 A MET 231 A MET 252 A ALA 239 A ALA 260 A ARG 261 A ARG 282 A GLY 264 A GLY 285 95 P 43 2 2