0.023782
0.003758
0.004748
0.000000
0.023878
0.000831
0.000000
0.000000
0.016933
0.00000
0.00000
0.00000
Zhang, R.-g.
Andersson, C.E.
Savchenko, A.
Skarina, T.
Evdokimova, E.
Beasley, S.
Arrowsmith, C.H.
Edwards, A.M.
Joachimiak, A.
Mowbray, S.L.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.23
100.98
98.98
42.049
42.400
60.195
C5 H11 O8 P
230.110
n
5-O-phosphono-beta-D-arabinofuranose
BETA-D-ARABINOFURANOSE-5'-PHOSPHATE; 5-O-phosphono-beta-D-arabinose; 5-O-phosphono-D-arabinose; 5-O-phosphono-arabinose
D-saccharide, beta linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
R
C
N
2
N
O
N
3
S
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
R
C
N
8
N
C
N
9
N
O
N
10
N
P
N
11
N
O
N
12
N
O
N
13
N
O
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
N
N
27
S
C
N
28
N
C
N
29
N
O
N
30
N
C
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
N
N
47
N
C
N
48
N
N
N
49
N
N
N
50
N
O
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
R
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
S
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
Y
167
N
C
Y
168
N
N
Y
169
N
C
Y
170
N
C
Y
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
S
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
N
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
SE
N
263
N
C
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
R
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
N
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
doub
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
doub
N
168
N
sing
Y
169
N
sing
N
170
N
sing
Y
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
Y
275
N
sing
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
UK
Structure
STRUE6
2005
0969-2126
11
31
10.1016/S0969-2126(02)00933-4
12517338
Structure of Escherichia Coli Ribose-5-Phosphate Isomerase: A Ubiquitous Enzyme of the Pentose Phosphate Pathway and the Calvin Cycle
2003
US
J.Bacteriol.
JOBAAY
0767
0021-9193
175
5628
8366047
Escherichia Coli Rpia Gene Encoding Ribose Phosphate Isomerase A
1993
10.2210/pdb1o8b/pdb
pdb_00001o8b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
GE(220),HORIZONTAL FOCUSING MULTILAYER
CCD
2002-07-13
ADSC CCD
DIAMOND (111), GE(220)
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
23211.604
RIBOSE 5-PHOSPHATE ISOMERASE
5.3.1.6
2
man
polymer
230.110
5-O-phosphono-beta-D-arabinofuranose
2
man
non-polymer
18.015
water
159
nat
water
PHOSPHORIBOISOMERASE A, RPIA
no
yes
(MSE)TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT(MSE)KGQIEGAVSSSDASTEKLKSLGIHVFDLNE
VDSLGIYVDGADEINGH(MSE)Q(MSE)IKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIP(MSE)AR
SAVARQLVKLGGRPEYRQGVVTDNGNVILDVHG(MSE)EILDPIA(MSE)ENAINAIPGVVTVGLFANRGADVALIGTPD
GVKTIVK
MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV
DGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
562
ESCHERICHIA COLI
469008
ESCHERICHIA COLI
BL21(DE3)
PET15B
1
2.3
46
8.50
CRYSTALS WERE GROWN FROM A SOLUTION CONTAINING 3.5 MG/ML PROTEIN, 30-35 % PEG 4000 10 MM ARABINOSE-5-PHOSPHATE, 0.05M TRIS-HCL PH 8.4, 0.1 M MGCL2
pdbx_database_related
struct_conn
atom_site
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Atomic model
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2003-01-24
1
1
2011-07-13
1
2
2019-08-21
2
0
2020-07-29
2
1
2023-12-13
_pdbx_database_related.db_name
_struct_conn.pdbx_leaving_atom_flag
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
b-D-Araf5PO3
CRYSTAL STRUCTURE OF D-RIBOSE-5-PHOSPHATE ISOMERASE (RPIA)FROM ESCHERICHIA COLI.
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2002-11-26
REL
REL
1
A
O
HOH
2008
6.75
ABF
5-O-phosphono-beta-D-arabinofuranose
HOH
water
1KS2
PDB ENTRY 1KS2
PDB
experimental model
ABF
1269
2
ABF
ABF
1269
A
ABF
1269
2
ABF
ABF
1269
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
HOH
2053
3
HOH
HOH
2053
B
HOH
2054
3
HOH
HOH
2054
B
HOH
2055
3
HOH
HOH
2055
B
HOH
2056
3
HOH
HOH
2056
B
HOH
2057
3
HOH
HOH
2057
B
HOH
2058
3
HOH
HOH
2058
B
HOH
2059
3
HOH
HOH
2059
B
HOH
2060
3
HOH
HOH
2060
B
HOH
2061
3
HOH
HOH
2061
B
HOH
2062
3
HOH
HOH
2062
B
HOH
2063
3
HOH
HOH
2063
B
HOH
2064
3
HOH
HOH
2064
B
HOH
2065
3
HOH
HOH
2065
B
HOH
2066
3
HOH
HOH
2066
B
HOH
2067
3
HOH
HOH
2067
B
HOH
2068
3
HOH
HOH
2068
B
HOH
2069
3
HOH
HOH
2069
B
HOH
2070
3
HOH
HOH
2070
B
HOH
2071
3
HOH
HOH
2071
B
HOH
2072
3
HOH
HOH
2072
B
HOH
2073
3
HOH
HOH
2073
B
HOH
2074
3
HOH
HOH
2074
B
HOH
2075
3
HOH
HOH
2075
B
HOH
2076
3
HOH
HOH
2076
B
HOH
2077
3
HOH
HOH
2077
B
HOH
2078
3
HOH
HOH
2078
B
HOH
2079
3
HOH
HOH
2079
B
HOH
2080
3
HOH
HOH
2080
B
HOH
2081
3
HOH
HOH
2081
B
HOH
2082
3
HOH
HOH
2082
B
HOH
2083
3
HOH
HOH
2083
B
HOH
2084
3
HOH
HOH
2084
B
HOH
2085
3
HOH
HOH
2085
B
HOH
2086
3
HOH
HOH
2086
B
HOH
2087
3
HOH
HOH
2087
B
HOH
2088
3
HOH
HOH
2088
B
HOH
2089
3
HOH
HOH
2089
B
HOH
2090
3
HOH
HOH
2090
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
ILE
23
n
23
ILE
23
A
VAL
24
n
24
VAL
24
A
GLY
25
n
25
GLY
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
SER
30
n
30
SER
30
A
THR
31
n
31
THR
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
GLU
47
n
47
GLU
47
A
GLY
48
n
48
GLY
48
A
ALA
49
n
49
ALA
49
A
VAL
50
n
50
VAL
50
A
SER
51
n
51
SER
51
A
SER
52
n
52
SER
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
n
56
56
A
n
57
57
A
n
58
58
A
n
59
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
n
65
65
A
n
66
66
A
n
67
67
A
PHE
68
n
68
PHE
68
A
ASP
69
n
69
ASP
69
A
LEU
70
n
70
LEU
70
A
ASN
71
n
71
ASN
71
A
GLU
72
n
72
GLU
72
A
VAL
73
n
73
VAL
73
A
ASP
74
n
74
ASP
74
A
SER
75
n
75
SER
75
A
LEU
76
n
76
LEU
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
TYR
79
n
79
TYR
79
A
VAL
80
n
80
VAL
80
A
ASP
81
n
81
ASP
81
A
GLY
82
n
82
GLY
82
A
ALA
83
n
83
ALA
83
A
ASP
84
n
84
ASP
84
A
GLU
85
n
85
GLU
85
A
ILE
86
n
86
ILE
86
A
ASN
87
n
87
ASN
87
A
GLY
88
n
88
GLY
88
A
HIS
89
n
89
HIS
89
A
MSE
90
n
90
MSE
90
A
GLN
91
n
91
GLN
91
A
MSE
92
n
92
MSE
92
A
ILE
93
n
93
ILE
93
A
LYS
94
n
94
LYS
94
A
GLY
95
n
95
GLY
95
A
GLY
96
n
96
GLY
96
A
GLY
97
n
97
GLY
97
A
n
98
98
A
ALA
99
n
99
ALA
99
A
LEU
100
n
100
LEU
100
A
THR
101
n
101
THR
101
A
ARG
102
n
102
ARG
102
A
GLU
103
n
103
GLU
103
A
LYS
104
n
104
LYS
104
A
ILE
105
n
105
ILE
105
A
ILE
106
n
106
ILE
106
A
ALA
107
n
107
ALA
107
A
SER
108
n
108
SER
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
GLU
111
n
111
GLU
111
A
LYS
112
n
112
LYS
112
A
PHE
113
n
113
PHE
113
A
ILE
114
n
114
ILE
114
A
CYS
115
n
115
CYS
115
A
ILE
116
n
116
ILE
116
A
ALA
117
n
117
ALA
117
A
ASP
118
n
118
ASP
118
A
ALA
119
n
119
ALA
119
A
SER
120
n
120
SER
120
A
LYS
121
n
121
LYS
121
A
GLN
122
n
122
GLN
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
ILE
125
n
125
ILE
125
A
LEU
126
n
126
LEU
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
PHE
129
n
129
PHE
129
A
PRO
130
n
130
PRO
130
A
LEU
131
n
131
LEU
131
A
PRO
132
n
132
PRO
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
ILE
136
n
136
ILE
136
A
PRO
137
n
137
PRO
137
A
MSE
138
n
138
MSE
138
A
ALA
139
n
139
ALA
139
A
ARG
140
n
140
ARG
140
A
SER
141
n
141
SER
141
A
ALA
142
n
142
ALA
142
A
VAL
143
n
143
VAL
143
A
ALA
144
n
144
ALA
144
A
ARG
145
n
145
ARG
145
A
GLN
146
n
146
GLN
146
A
LEU
147
n
147
LEU
147
A
VAL
148
n
148
VAL
148
A
LYS
149
n
149
LYS
149
A
LEU
150
n
150
LEU
150
A
GLY
151
n
151
GLY
151
A
GLY
152
n
152
GLY
152
A
ARG
153
n
153
ARG
153
A
PRO
154
n
154
PRO
154
A
GLU
155
n
155
GLU
155
A
TYR
156
n
156
TYR
156
A
ARG
157
n
157
ARG
157
A
GLN
158
n
158
GLN
158
A
GLY
159
n
159
GLY
159
A
VAL
160
n
160
VAL
160
A
VAL
161
n
161
VAL
161
A
THR
162
n
162
THR
162
A
ASP
163
n
163
ASP
163
A
ASN
164
n
164
ASN
164
A
GLY
165
n
165
GLY
165
A
ASN
166
n
166
ASN
166
A
VAL
167
n
167
VAL
167
A
ILE
168
n
168
ILE
168
A
LEU
169
n
169
LEU
169
A
ASP
170
n
170
ASP
170
A
VAL
171
n
171
VAL
171
A
HIS
172
n
172
HIS
172
A
GLY
173
n
173
GLY
173
A
MSE
174
n
174
MSE
174
A
GLU
175
n
175
GLU
175
A
ILE
176
n
176
ILE
176
A
LEU
177
n
177
LEU
177
A
ASP
178
n
178
ASP
178
A
PRO
179
n
179
PRO
179
A
ILE
180
n
180
ILE
180
A
ALA
181
n
181
ALA
181
A
MSE
182
n
182
MSE
182
A
GLU
183
n
183
GLU
183
A
ASN
184
n
184
ASN
184
A
ALA
185
n
185
ALA
185
A
ILE
186
n
186
ILE
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
ILE
189
n
189
ILE
189
A
PRO
190
n
190
PRO
190
A
GLY
191
n
191
GLY
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
THR
194
n
194
THR
194
A
VAL
195
n
195
VAL
195
A
GLY
196
n
196
GLY
196
A
LEU
197
n
197
LEU
197
A
PHE
198
n
198
PHE
198
A
ALA
199
n
199
ALA
199
A
ASN
200
n
200
ASN
200
A
ARG
201
n
201
ARG
201
A
GLY
202
n
202
GLY
202
A
ALA
203
n
203
ALA
203
A
ASP
204
n
204
ASP
204
A
VAL
205
n
205
VAL
205
A
ALA
206
n
206
ALA
206
A
LEU
207
n
207
LEU
207
A
ILE
208
n
208
ILE
208
A
GLY
209
n
209
GLY
209
A
THR
210
n
210
THR
210
A
PRO
211
n
211
PRO
211
A
ASP
212
n
212
ASP
212
A
GLY
213
n
213
GLY
213
A
VAL
214
n
214
VAL
214
A
LYS
215
n
215
LYS
215
A
THR
216
n
216
THR
216
A
ILE
217
n
217
ILE
217
A
VAL
218
n
218
VAL
218
A
n
219
219
A
n
1
1
B
THR
2
n
2
THR
2
B
GLN
3
n
3
GLN
3
B
ASP
4
n
4
ASP
4
B
GLU
5
n
5
GLU
5
B
LEU
6
n
6
LEU
6
B
LYS
7
n
7
LYS
7
B
LYS
8
n
8
LYS
8
B
ALA
9
n
9
ALA
9
B
VAL
10
n
10
VAL
10
B
GLY
11
n
11
GLY
11
B
TRP
12
n
12
TRP
12
B
ALA
13
n
13
ALA
13
B
ALA
14
n
14
ALA
14
B
LEU
15
n
15
LEU
15
B
GLN
16
n
16
GLN
16
B
TYR
17
n
17
TYR
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
VAL
24
n
24
VAL
24
B
GLY
25
n
25
GLY
25
B
VAL
26
n
26
VAL
26
B
GLY
27
n
27
GLY
27
B
THR
28
n
28
THR
28
B
GLY
29
n
29
GLY
29
B
SER
30
n
30
SER
30
B
THR
31
n
31
THR
31
B
ALA
32
n
32
ALA
32
B
ALA
33
n
33
ALA
33
B
HIS
34
n
34
HIS
34
B
PHE
35
n
35
PHE
35
B
ILE
36
n
36
ILE
36
B
ASP
37
n
37
ASP
37
B
ALA
38
n
38
ALA
38
B
LEU
39
n
39
LEU
39
B
GLY
40
n
40
GLY
40
B
THR
41
n
41
THR
41
B
MSE
42
n
42
MSE
42
B
LYS
43
n
43
LYS
43
B
GLY
44
n
44
GLY
44
B
GLN
45
n
45
GLN
45
B
ILE
46
n
46
ILE
46
B
GLU
47
n
47
GLU
47
B
GLY
48
n
48
GLY
48
B
ALA
49
n
49
ALA
49
B
VAL
50
n
50
VAL
50
B
SER
51
n
51
SER
51
B
SER
52
n
52
SER
52
B
SER
53
n
53
SER
53
B
ASP
54
n
54
ASP
54
B
ALA
55
n
55
ALA
55
B
SER
56
n
56
SER
56
B
THR
57
n
57
THR
57
B
GLU
58
n
58
GLU
58
B
LYS
59
n
59
LYS
59
B
LEU
60
n
60
LEU
60
B
LYS
61
n
61
LYS
61
B
SER
62
n
62
SER
62
B
LEU
63
n
63
LEU
63
B
GLY
64
n
64
GLY
64
B
ILE
65
n
65
ILE
65
B
HIS
66
n
66
HIS
66
B
VAL
67
n
67
VAL
67
B
PHE
68
n
68
PHE
68
B
ASP
69
n
69
ASP
69
B
LEU
70
n
70
LEU
70
B
ASN
71
n
71
ASN
71
B
GLU
72
n
72
GLU
72
B
VAL
73
n
73
VAL
73
B
ASP
74
n
74
ASP
74
B
SER
75
n
75
SER
75
B
LEU
76
n
76
LEU
76
B
GLY
77
n
77
GLY
77
B
ILE
78
n
78
ILE
78
B
TYR
79
n
79
TYR
79
B
VAL
80
n
80
VAL
80
B
ASP
81
n
81
ASP
81
B
GLY
82
n
82
GLY
82
B
ALA
83
n
83
ALA
83
B
ASP
84
n
84
ASP
84
B
GLU
85
n
85
GLU
85
B
ILE
86
n
86
ILE
86
B
ASN
87
n
87
ASN
87
B
GLY
88
n
88
GLY
88
B
HIS
89
n
89
HIS
89
B
MSE
90
n
90
MSE
90
B
GLN
91
n
91
GLN
91
B
MSE
92
n
92
MSE
92
B
ILE
93
n
93
ILE
93
B
LYS
94
n
94
LYS
94
B
GLY
95
n
95
GLY
95
B
GLY
96
n
96
GLY
96
B
GLY
97
n
97
GLY
97
B
n
98
98
B
ALA
99
n
99
ALA
99
B
LEU
100
n
100
LEU
100
B
THR
101
n
101
THR
101
B
ARG
102
n
102
ARG
102
B
GLU
103
n
103
GLU
103
B
LYS
104
n
104
LYS
104
B
ILE
105
n
105
ILE
105
B
ILE
106
n
106
ILE
106
B
ALA
107
n
107
ALA
107
B
SER
108
n
108
SER
108
B
VAL
109
n
109
VAL
109
B
ALA
110
n
110
ALA
110
B
GLU
111
n
111
GLU
111
B
LYS
112
n
112
LYS
112
B
PHE
113
n
113
PHE
113
B
ILE
114
n
114
ILE
114
B
CYS
115
n
115
CYS
115
B
ILE
116
n
116
ILE
116
B
ALA
117
n
117
ALA
117
B
ASP
118
n
118
ASP
118
B
ALA
119
n
119
ALA
119
B
SER
120
n
120
SER
120
B
LYS
121
n
121
LYS
121
B
GLN
122
n
122
GLN
122
B
VAL
123
n
123
VAL
123
B
ASP
124
n
124
ASP
124
B
ILE
125
n
125
ILE
125
B
LEU
126
n
126
LEU
126
B
GLY
127
n
127
GLY
127
B
LYS
128
n
128
LYS
128
B
PHE
129
n
129
PHE
129
B
PRO
130
n
130
PRO
130
B
LEU
131
n
131
LEU
131
B
PRO
132
n
132
PRO
132
B
VAL
133
n
133
VAL
133
B
GLU
134
n
134
GLU
134
B
VAL
135
n
135
VAL
135
B
ILE
136
n
136
ILE
136
B
PRO
137
n
137
PRO
137
B
MSE
138
n
138
MSE
138
B
ALA
139
n
139
ALA
139
B
ARG
140
n
140
ARG
140
B
SER
141
n
141
SER
141
B
ALA
142
n
142
ALA
142
B
VAL
143
n
143
VAL
143
B
ALA
144
n
144
ALA
144
B
ARG
145
n
145
ARG
145
B
GLN
146
n
146
GLN
146
B
LEU
147
n
147
LEU
147
B
VAL
148
n
148
VAL
148
B
LYS
149
n
149
LYS
149
B
LEU
150
n
150
LEU
150
B
GLY
151
n
151
GLY
151
B
GLY
152
n
152
GLY
152
B
ARG
153
n
153
ARG
153
B
PRO
154
n
154
PRO
154
B
GLU
155
n
155
GLU
155
B
TYR
156
n
156
TYR
156
B
ARG
157
n
157
ARG
157
B
GLN
158
n
158
GLN
158
B
GLY
159
n
159
GLY
159
B
VAL
160
n
160
VAL
160
B
VAL
161
n
161
VAL
161
B
THR
162
n
162
THR
162
B
ASP
163
n
163
ASP
163
B
ASN
164
n
164
ASN
164
B
GLY
165
n
165
GLY
165
B
ASN
166
n
166
ASN
166
B
VAL
167
n
167
VAL
167
B
ILE
168
n
168
ILE
168
B
LEU
169
n
169
LEU
169
B
ASP
170
n
170
ASP
170
B
VAL
171
n
171
VAL
171
B
HIS
172
n
172
HIS
172
B
GLY
173
n
173
GLY
173
B
MSE
174
n
174
MSE
174
B
GLU
175
n
175
GLU
175
B
ILE
176
n
176
ILE
176
B
LEU
177
n
177
LEU
177
B
ASP
178
n
178
ASP
178
B
PRO
179
n
179
PRO
179
B
ILE
180
n
180
ILE
180
B
ALA
181
n
181
ALA
181
B
MSE
182
n
182
MSE
182
B
GLU
183
n
183
GLU
183
B
ASN
184
n
184
ASN
184
B
ALA
185
n
185
ALA
185
B
ILE
186
n
186
ILE
186
B
ASN
187
n
187
ASN
187
B
ALA
188
n
188
ALA
188
B
ILE
189
n
189
ILE
189
B
PRO
190
n
190
PRO
190
B
GLY
191
n
191
GLY
191
B
VAL
192
n
192
VAL
192
B
VAL
193
n
193
VAL
193
B
THR
194
n
194
THR
194
B
VAL
195
n
195
VAL
195
B
GLY
196
n
196
GLY
196
B
LEU
197
n
197
LEU
197
B
PHE
198
n
198
PHE
198
B
ALA
199
n
199
ALA
199
B
ASN
200
n
200
ASN
200
B
ARG
201
n
201
ARG
201
B
GLY
202
n
202
GLY
202
B
ALA
203
n
203
ALA
203
B
ASP
204
n
204
ASP
204
B
VAL
205
n
205
VAL
205
B
ALA
206
n
206
ALA
206
B
LEU
207
n
207
LEU
207
B
ILE
208
n
208
ILE
208
B
GLY
209
n
209
GLY
209
B
THR
210
n
210
THR
210
B
PRO
211
n
211
PRO
211
B
ASP
212
n
212
ASP
212
B
GLY
213
n
213
GLY
213
B
VAL
214
n
214
VAL
214
B
LYS
215
n
215
LYS
215
B
THR
216
n
216
THR
216
B
ILE
217
n
217
ILE
217
B
VAL
218
n
218
VAL
218
B
n
219
219
B
13.6612
12.8122
-3.3693
14.4295
-8.0774
6.6576
-0.8782
0.7406
-0.7833
-0.7150
0.4396
-0.8107
0.6265
-0.0782
0.4386
0.1241
-0.0229
0.0754
0.1251
-0.0766
0.1088
refined
3.2535
-4.3999
-7.1036
X-RAY DIFFRACTION
31.6244
-0.3751
-8.3084
3.7495
-0.0229
4.3765
-1.1248
1.0320
-2.1034
-0.0455
0.4302
-0.1840
0.4329
-0.2102
0.6946
0.1102
-0.0465
0.0942
0.1260
-0.1247
0.2292
refined
10.1763
-3.2891
-7.8715
X-RAY DIFFRACTION
3.4411
1.0103
-1.9015
1.4398
-0.3453
2.7794
-0.1475
0.3077
0.0789
-0.2411
0.1463
0.1025
0.0460
-0.0314
0.0012
0.0477
-0.0225
-0.0353
0.0697
0.0045
0.0320
refined
0.8573
2.6860
-2.9094
X-RAY DIFFRACTION
1.3097
0.1935
-0.1386
0.9522
-0.2435
1.0099
-0.0261
0.0896
-0.0615
-0.0258
0.0546
0.1684
0.0769
-0.0883
-0.0285
0.0181
0.0015
-0.0063
0.0129
0.0064
0.0540
refined
-1.6343
1.9889
8.1974
X-RAY DIFFRACTION
5.6936
3.8307
-2.7468
5.8930
-2.9626
6.0227
0.1810
-0.2243
0.0527
0.3466
-0.2783
-0.2056
0.0252
0.1664
0.0973
0.1067
-0.0292
-0.0156
0.0489
-0.0158
0.0121
refined
25.8456
28.3513
31.5816
X-RAY DIFFRACTION
1.4978
0.2604
0.5624
2.3325
-0.5224
1.9561
0.1062
-0.2402
-0.1376
0.4160
-0.0848
-0.1350
0.1433
0.0463
-0.0214
0.1257
-0.0094
-0.0173
0.0618
0.0005
0.0482
refined
20.5236
15.8776
29.3018
X-RAY DIFFRACTION
0.6919
0.2348
0.1302
1.0107
0.2390
0.9583
0.0280
0.0192
0.1074
0.0115
-0.0091
0.0084
-0.0617
0.0437
-0.0189
0.0093
0.0065
0.0101
0.0168
-0.0002
0.0378
refined
14.5400
21.0438
13.0985
X-RAY DIFFRACTION
A
23
A
31
X-RAY DIFFRACTION
1
A
47
A
55
X-RAY DIFFRACTION
2
A
68
A
97
X-RAY DIFFRACTION
3
A
99
A
218
X-RAY DIFFRACTION
4
B
2
B
17
X-RAY DIFFRACTION
5
B
22
B
97
X-RAY DIFFRACTION
6
B
99
B
218
X-RAY DIFFRACTION
7
author_and_software_defined_assembly
PISA
2
dimeric
3070
-13.11
16050
A
MSE
90
SELENOMETHIONINE
A
MSE
90
MET
A
MSE
92
SELENOMETHIONINE
A
MSE
92
MET
A
MSE
138
SELENOMETHIONINE
A
MSE
138
MET
A
MSE
174
SELENOMETHIONINE
A
MSE
174
MET
A
MSE
182
SELENOMETHIONINE
A
MSE
182
MET
B
MSE
42
SELENOMETHIONINE
B
MSE
42
MET
B
MSE
90
SELENOMETHIONINE
B
MSE
90
MET
B
MSE
92
SELENOMETHIONINE
B
MSE
92
MET
B
MSE
138
SELENOMETHIONINE
B
MSE
138
MET
B
MSE
174
SELENOMETHIONINE
B
MSE
174
MET
B
MSE
182
SELENOMETHIONINE
B
MSE
182
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
50
A
N
VAL
50
A
O
VAL
24
A
O
VAL
24
A
N
GLY
25
A
N
GLY
25
A
O
ILE
78
A
O
ILE
78
A
O
LEU
76
A
O
LEU
76
A
N
GLU
111
A
N
GLU
111
A
N
CYS
115
A
N
CYS
115
A
O
VAL
205
A
O
VAL
205
A
N
THR
210
A
N
THR
210
A
O
GLY
213
A
O
GLY
213
A
N
VAL
123
A
N
VAL
123
A
O
ILE
86
A
O
ILE
86
A
O
GLU
85
A
O
GLU
85
A
N
ILE
93
A
N
ILE
93
A
N
MSE
92
A
N
MSE
92
A
O
PHE
198
A
O
PHE
198
A
N
GLU
155
A
N
GLU
155
A
O
ASP
170
A
O
ASP
170
A
N
VAL
171
A
N
VAL
171
A
O
LEU
131
A
O
LEU
131
A
O
GLU
134
A
O
GLU
134
A
N
VAL
193
A
N
VAL
193
B
N
PHE
68
B
N
PHE
68
B
O
ALA
49
B
O
ALA
49
B
N
VAL
50
B
N
VAL
50
B
O
VAL
24
B
O
VAL
24
B
O
ILE
23
B
O
ILE
23
B
N
GLY
77
B
N
GLY
77
B
O
LEU
76
B
O
LEU
76
B
N
GLU
111
B
N
GLU
111
B
N
CYS
115
B
N
CYS
115
B
O
VAL
205
B
O
VAL
205
B
N
THR
210
B
N
THR
210
B
O
GLY
213
B
O
GLY
213
A
N
VAL
123
A
N
VAL
123
A
O
ILE
86
A
O
ILE
86
B
O
GLU
85
B
O
GLU
85
B
N
ILE
93
B
N
ILE
93
B
N
MSE
92
B
N
MSE
92
B
O
PHE
198
B
O
PHE
198
B
N
GLU
155
B
N
GLU
155
B
O
ASP
170
B
O
ASP
170
B
N
VAL
171
B
N
VAL
171
B
O
LEU
131
B
O
LEU
131
B
O
GLU
134
B
O
GLU
134
B
N
VAL
193
B
N
VAL
193
1
A
MSE
1
A
MSE
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
ASP
4
A
ASP
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
LEU
6
A
LEU
6
1
Y
1
A
LYS
7
A
LYS
7
1
Y
1
A
LYS
8
A
LYS
8
1
Y
1
A
ALA
9
A
ALA
9
1
Y
1
A
VAL
10
A
VAL
10
1
Y
1
A
GLY
11
A
GLY
11
1
Y
1
A
TRP
12
A
TRP
12
1
Y
1
A
ALA
13
A
ALA
13
1
Y
1
A
ALA
14
A
ALA
14
1
Y
1
A
LEU
15
A
LEU
15
1
Y
1
A
GLN
16
A
GLN
16
1
Y
1
A
TYR
17
A
TYR
17
1
Y
1
A
VAL
18
A
VAL
18
1
Y
1
A
GLN
19
A
GLN
19
1
Y
1
A
PRO
20
A
PRO
20
1
Y
1
A
GLY
21
A
GLY
21
1
Y
1
A
THR
22
A
THR
22
1
Y
1
A
ALA
32
A
ALA
32
1
Y
1
A
ALA
33
A
ALA
33
1
Y
1
A
HIS
34
A
HIS
34
1
Y
1
A
PHE
35
A
PHE
35
1
Y
1
A
ILE
36
A
ILE
36
1
Y
1
A
ASP
37
A
ASP
37
1
Y
1
A
ALA
38
A
ALA
38
1
Y
1
A
LEU
39
A
LEU
39
1
Y
1
A
GLY
40
A
GLY
40
1
Y
1
A
THR
41
A
THR
41
1
Y
1
A
MSE
42
A
MSE
42
1
Y
1
A
LYS
43
A
LYS
43
1
Y
1
A
GLY
44
A
GLY
44
1
Y
1
A
GLN
45
A
GLN
45
1
Y
1
A
ILE
46
A
ILE
46
1
Y
1
A
SER
56
A
SER
56
1
Y
1
A
THR
57
A
THR
57
1
Y
1
A
GLU
58
A
GLU
58
1
Y
1
A
LYS
59
A
LYS
59
1
Y
1
A
LEU
60
A
LEU
60
1
Y
1
A
LYS
61
A
LYS
61
1
Y
1
A
SER
62
A
SER
62
1
Y
1
A
LEU
63
A
LEU
63
1
Y
1
A
GLY
64
A
GLY
64
1
Y
1
A
ILE
65
A
ILE
65
1
Y
1
A
HIS
66
A
HIS
66
1
Y
1
A
VAL
67
A
VAL
67
1
Y
1
A
ALA
98
A
ALA
98
1
Y
1
A
LYS
219
A
LYS
219
1
Y
1
B
MSE
1
B
MSE
1
1
Y
1
B
VAL
18
B
VAL
18
1
Y
1
B
GLN
19
B
GLN
19
1
Y
1
B
PRO
20
B
PRO
20
1
Y
1
B
GLY
21
B
GLY
21
1
Y
1
B
ALA
98
B
ALA
98
1
Y
1
B
LYS
219
B
LYS
219
1
Y
1
B
B
O
O
ASN
HOH
164
2064
2.18
1
5.76
0.90
118.30
124.06
B
B
B
CB
CG
OD2
ASP
ASP
ASP
204
204
204
N
10.26
-0.54000
-0.68000
0.25000
-0.48000
-0.30000
0.89000
0.942
0.934
ELECTRON DENSITY COULD NOT BE OBSERVED FOR RESIDUES 1-22, 32-46, 56-67, 98 AND 219 IN MOLECULE A AND RESIDUES 1,18-21, 98 AND 219 IN MOLECULE B. THESE RESIDUES WERE OMITTED AND ARE NOT PRESENT IN THE MODEL.
0.240
0.224
0.224
1.25
40.00
4498
86708
4.900
81.8
1.076
0.046
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.060
0.060
0.80
0.80
1.40
PDB ENTRY 1KS2
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.25
40.00
159
2958
28
0
2771
0.016
0.022
2828
1.863
1.981
3829
0.108
0.200
460
0.008
0.020
2041
0.220
0.300
1223
0.116
0.500
260
0.161
0.300
22
0.507
0.500
1
0.775
1.500
1861
1.147
2.000
2982
2.236
3.000
967
3.122
4.500
847
0.2930
0.3040
1.28
136
2767
20
1.250
40.000
1O8B
90067
0.09500
1
12.4000
4.300
81.8
1.25
1.32
1.100
0.76000
1
3.60
40.1
refinement
REFMAC
5.0
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
Structure of Escherichia coli ribose-5-phosphate isomerase, RpiA, complexed with arabinose-5-phosphate.
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASP
69
A
ASP
69
HELX_P
A
VAL
73
A
VAL
73
5
1
5
A
LEU
100
A
LEU
100
HELX_P
A
VAL
109
A
VAL
109
1
2
10
A
ALA
139
A
ALA
139
HELX_P
A
LEU
150
A
LEU
150
1
3
12
A
PRO
179
A
PRO
179
HELX_P
A
ALA
188
A
ALA
188
1
4
10
B
THR
2
B
THR
2
HELX_P
B
TYR
17
B
TYR
17
1
5
16
B
GLY
29
B
GLY
29
HELX_P
B
THR
41
B
THR
41
1
6
13
B
ASP
54
B
ASP
54
HELX_P
B
LEU
63
B
LEU
63
1
7
10
B
ASP
69
B
ASP
69
HELX_P
B
VAL
73
B
VAL
73
5
8
5
B
LEU
100
B
LEU
100
HELX_P
B
VAL
109
B
VAL
109
1
9
10
B
ALA
139
B
ALA
139
HELX_P
B
LEU
150
B
LEU
150
1
10
12
B
PRO
179
B
PRO
179
HELX_P
B
ALA
188
B
ALA
188
1
11
10
covale
1.336
both
A
HIS
89
A
C
HIS
89
1_555
A
MSE
90
A
N
MSE
90
1_555
covale
1.334
both
A
MSE
90
A
C
MSE
90
1_555
A
GLN
91
A
N
GLN
91
1_555
covale
1.324
both
A
GLN
91
A
C
GLN
91
1_555
A
MSE
92
A
N
MSE
92
1_555
covale
1.349
both
A
MSE
92
A
C
MSE
92
1_555
A
ILE
93
A
N
ILE
93
1_555
covale
1.333
both
A
PRO
137
A
C
PRO
137
1_555
A
MSE
138
A
N
MSE
138
1_555
covale
1.333
both
A
MSE
138
A
C
MSE
138
1_555
A
ALA
139
A
N
ALA
139
1_555
covale
1.324
both
A
GLY
173
A
C
GLY
173
1_555
A
MSE
174
A
N
MSE
174
1_555
covale
1.321
both
A
MSE
174
A
C
MSE
174
1_555
A
GLU
175
A
N
GLU
175
1_555
covale
1.329
both
A
ALA
181
A
C
ALA
181
1_555
A
MSE
182
A
N
MSE
182
1_555
covale
1.323
both
A
MSE
182
A
C
MSE
182
1_555
A
GLU
183
A
N
GLU
183
1_555
covale
1.326
both
B
THR
41
B
C
THR
41
1_555
B
MSE
42
B
N
MSE
42
1_555
covale
1.330
both
B
MSE
42
B
C
MSE
42
1_555
B
LYS
43
B
N
LYS
43
1_555
covale
1.335
both
B
HIS
89
B
C
HIS
89
1_555
B
MSE
90
B
N
MSE
90
1_555
covale
1.330
both
B
MSE
90
B
C
MSE
90
1_555
B
GLN
91
B
N
GLN
91
1_555
covale
1.318
both
B
GLN
91
B
C
GLN
91
1_555
B
MSE
92
B
N
MSE
92
1_555
covale
1.343
both
B
MSE
92
B
C
MSE
92
1_555
B
ILE
93
B
N
ILE
93
1_555
covale
1.324
both
B
PRO
137
B
C
PRO
137
1_555
B
MSE
138
B
N
MSE
138
1_555
covale
1.328
both
B
MSE
138
B
C
MSE
138
1_555
B
ALA
139
B
N
ALA
139
1_555
covale
1.323
both
B
GLY
173
B
C
GLY
173
1_555
B
MSE
174
B
N
MSE
174
1_555
covale
1.328
both
B
MSE
174
B
C
MSE
174
1_555
B
GLU
175
B
N
GLU
175
1_555
covale
1.322
both
B
ALA
181
B
C
ALA
181
1_555
B
MSE
182
B
N
MSE
182
1_555
covale
1.333
both
B
MSE
182
B
C
MSE
182
1_555
B
GLU
183
B
N
GLU
183
1_555
ISOMERASE
ISOMERASE, RIBOSE PHOSPHATE ISOMERASE, RPIA, PSI, PROTEIN STRUCTURE INITIATIVE, MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS
RPIA_ECOLI
UNP
1
P0A7Z0
1
219
1O8B
1
219
P0A7Z0
A
1
1
219
1
219
1O8B
1
219
P0A7Z0
B
1
1
219
6
4
4
7
4
4
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
48
A
GLY
48
A
SER
52
A
SER
52
A
VAL
24
A
VAL
24
A
VAL
26
A
VAL
26
A
GLY
77
A
GLY
77
A
ASP
81
A
ASP
81
A
LYS
112
A
LYS
112
A
ILE
116
A
ILE
116
A
VAL
205
A
VAL
205
A
THR
210
A
THR
210
A
ASP
212
A
ASP
212
A
VAL
218
A
VAL
218
A
LYS
121
A
LYS
121
A
VAL
123
A
VAL
123
A
GLU
85
A
GLU
85
A
ILE
86
A
ILE
86
A
MSE
90
A
MSE
90
A
LYS
94
A
LYS
94
A
GLY
196
A
GLY
196
A
PHE
198
A
PHE
198
A
ARG
153
A
ARG
153
A
TYR
156
A
TYR
156
A
VAL
167
A
VAL
167
A
HIS
172
A
HIS
172
A
LEU
131
A
LEU
131
A
VAL
135
A
VAL
135
A
VAL
192
A
VAL
192
A
VAL
195
A
VAL
195
B
HIS
66
B
HIS
66
B
PHE
68
B
PHE
68
B
GLY
48
B
GLY
48
B
SER
52
B
SER
52
B
ILE
23
B
ILE
23
B
VAL
26
B
VAL
26
B
LEU
76
B
LEU
76
B
ASP
81
B
ASP
81
B
LYS
112
B
LYS
112
B
ILE
116
B
ILE
116
B
VAL
205
B
VAL
205
B
THR
210
B
THR
210
B
ASP
212
B
ASP
212
B
ILE
217
B
ILE
217
B
LYS
121
B
LYS
121
B
VAL
123
B
VAL
123
A
GLU
85
A
GLU
85
A
ILE
86
A
ILE
86
B
MSE
90
B
MSE
90
B
ILE
93
B
ILE
93
B
GLY
196
B
GLY
196
B
PHE
198
B
PHE
198
B
ARG
153
B
ARG
153
B
TYR
156
B
TYR
156
B
VAL
167
B
VAL
167
B
HIS
172
B
HIS
172
B
LEU
131
B
LEU
131
B
VAL
135
B
VAL
135
B
VAL
192
B
VAL
192
B
VAL
195
B
VAL
195
1
P 1