0.027501
0.000000
0.004572
0.000000
0.021133
0.000000
0.000000
0.000000
0.015993
0.00000
0.00000
0.00000
Mosbacher, T.G.
Schulz, G.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
99.44
90.00
36.362
47.320
63.385
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
329
147
10.1016/S0022-2836(03)00407-8
12742024
Crystal Structure of the Avilamycin Resistance-Conferring Methyltransferase Avira from Streptomyces Viridochromogenes
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
2002-09-08
MAD
M
x-ray
1
0.9774
1.0
BW7A
EMBL/DESY, HAMBURG
0.9774
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7A
26833.492
RRNA METHYLTRANSFERASE
YES
1
man
polymer
18.015
water
334
nat
water
no
yes
(MSE)SAYRHAVER(MSE)DSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLL
HRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTA
DVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRSRKIPVAPVKALERLKI
GTRSAV(MSE)VRAADVLEAGP
MSAYRHAVERMDSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQV
IASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRAL
SAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRSRKIPVAPVKALERLKIGTRSAVMV
RAADVLEAGP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1938
STREPTOMYCES VIRIDOCHROMOGENES
562
ESCHERICHIA COLI
B834
SE-MET
PRSETB
1
2.00
39
6.90
PEG 20000 9%, MES 6.6, pH 6.90
diffrn_source
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
1
0
2003-05-16
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-07-24
_diffrn_source.pdbx_synchrotron_site
_struct_conn.pdbx_leaving_atom_flag
RRNA METHYLTRANSFERASE AVIRA FROM STREPTOMYCES VIRIDOCHROMOGENES AT 1.5A
THE STRUCTURE OF THE RRNA METHYLTRANSFERASE ERMC': IMPLICATIONS FOR THE REACTION MECHANISM
THE STRUCTURE OF THE RRNA METHYLTRANSFERASE ERMC': IMPLICATIONS FOR THE REACTION MECHANISM
THE STRUCTURE OF THE RRNA METHYLTRANSFERASE ERMC': IMPLICATIONS FOR THE REACTION MECHANISM
THE STRUCTURE OF THE RRNA METHYLTRANSFERASE ERMC': IMPLICATIONS FOR THE REACTION MECHANISM
SOLUTION STRUCTURE OF AN RRNA METHYLTRANSFERASE (ERMAM) THAT CONFERS MACROLIDE -LINCOSAMIDE-STREPTOGRAMIN ANTIBIOTIC RESISTANCE, NMR, MINIMIZED AVERAGE STRUCTURE
PDBE
Y
PDBE
2002-12-13
REL
1
A
O
HOH
2011
6.91
1
A
O
HOH
2036
6.96
1
A
O
HOH
2037
6.06
1
A
O
HOH
2068
5.83
HOH
water
ENGINEERED MUTATION ILE 11 MET, ARG 190 GLY AND
LEU 239 MET. ALSO SEE REMARK 999 FOR MORE DETAILS
ON THE SECOND ENGINEERED MUTATION.
SEQUENCE IN DATABASE INCORRECT FROM RESIDUE 180 TO 195. THE
SWISS-PROT ACCESSION Q9F5K5 HAS THE SEQUENCE SARTGKGRCPRSRWRA
FOR RESIDUES 180-195, WHEREAS THE DEPOSITORS HAVE DETERMINED
THE SEQUENCE TO BE ERTHWEGQVPGQPVAG BY DNA SEQUENCING AND
STRUCTURAL STUDIES, RESULTING IN THE CONFLICTS SHOWN
IN THE SEQADV RECORDS BELOW.IN ADDITION,RESIDUE 190, WHICH
HAS BEEN PROVIDED BY THE DEPOSITORS AS AS AN ALANINE, HAS
BEEN ENGINEERED TO A GLYCINE, AS SHOWN IN THE SEQADV
RECORDS BELOW.
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
HOH
2079
2
HOH
HOH
2079
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2081
2
HOH
HOH
2081
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2083
2
HOH
HOH
2083
A
HOH
2084
2
HOH
HOH
2084
A
HOH
2085
2
HOH
HOH
2085
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2087
2
HOH
HOH
2087
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2089
2
HOH
HOH
2089
A
HOH
2090
2
HOH
HOH
2090
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
HOH
2093
2
HOH
HOH
2093
A
HOH
2094
2
HOH
HOH
2094
A
HOH
2095
2
HOH
HOH
2095
A
HOH
2096
2
HOH
HOH
2096
A
HOH
2097
2
HOH
HOH
2097
A
HOH
2098
2
HOH
HOH
2098
A
HOH
2099
2
HOH
HOH
2099
A
HOH
2100
2
HOH
HOH
2100
A
HOH
2101
2
HOH
HOH
2101
A
HOH
2102
2
HOH
HOH
2102
A
HOH
2103
2
HOH
HOH
2103
A
HOH
2104
2
HOH
HOH
2104
A
HOH
2105
2
HOH
HOH
2105
A
HOH
2106
2
HOH
HOH
2106
A
HOH
2107
2
HOH
HOH
2107
A
HOH
2108
2
HOH
HOH
2108
A
HOH
2109
2
HOH
HOH
2109
A
HOH
2110
2
HOH
HOH
2110
A
HOH
2111
2
HOH
HOH
2111
A
HOH
2112
2
HOH
HOH
2112
A
HOH
2113
2
HOH
HOH
2113
A
HOH
2114
2
HOH
HOH
2114
A
HOH
2115
2
HOH
HOH
2115
A
HOH
2116
2
HOH
HOH
2116
A
HOH
2117
2
HOH
HOH
2117
A
HOH
2118
2
HOH
HOH
2118
A
HOH
2119
2
HOH
HOH
2119
A
HOH
2120
2
HOH
HOH
2120
A
HOH
2121
2
HOH
HOH
2121
A
HOH
2122
2
HOH
HOH
2122
A
HOH
2123
2
HOH
HOH
2123
A
HOH
2124
2
HOH
HOH
2124
A
HOH
2125
2
HOH
HOH
2125
A
HOH
2126
2
HOH
HOH
2126
A
HOH
2127
2
HOH
HOH
2127
A
HOH
2128
2
HOH
HOH
2128
A
HOH
2129
2
HOH
HOH
2129
A
HOH
2130
2
HOH
HOH
2130
A
HOH
2131
2
HOH
HOH
2131
A
HOH
2132
2
HOH
HOH
2132
A
HOH
2133
2
HOH
HOH
2133
A
HOH
2134
2
HOH
HOH
2134
A
HOH
2135
2
HOH
HOH
2135
A
HOH
2136
2
HOH
HOH
2136
A
HOH
2137
2
HOH
HOH
2137
A
HOH
2138
2
HOH
HOH
2138
A
HOH
2139
2
HOH
HOH
2139
A
HOH
2140
2
HOH
HOH
2140
A
HOH
2141
2
HOH
HOH
2141
A
HOH
2142
2
HOH
HOH
2142
A
HOH
2143
2
HOH
HOH
2143
A
HOH
2144
2
HOH
HOH
2144
A
HOH
2145
2
HOH
HOH
2145
A
HOH
2146
2
HOH
HOH
2146
A
HOH
2147
2
HOH
HOH
2147
A
HOH
2148
2
HOH
HOH
2148
A
HOH
2149
2
HOH
HOH
2149
A
HOH
2150
2
HOH
HOH
2150
A
HOH
2151
2
HOH
HOH
2151
A
HOH
2152
2
HOH
HOH
2152
A
HOH
2153
2
HOH
HOH
2153
A
HOH
2154
2
HOH
HOH
2154
A
HOH
2155
2
HOH
HOH
2155
A
HOH
2156
2
HOH
HOH
2156
A
HOH
2157
2
HOH
HOH
2157
A
HOH
2158
2
HOH
HOH
2158
A
HOH
2159
2
HOH
HOH
2159
A
HOH
2160
2
HOH
HOH
2160
A
HOH
2161
2
HOH
HOH
2161
A
HOH
2162
2
HOH
HOH
2162
A
HOH
2163
2
HOH
HOH
2163
A
HOH
2164
2
HOH
HOH
2164
A
HOH
2165
2
HOH
HOH
2165
A
HOH
2166
2
HOH
HOH
2166
A
HOH
2167
2
HOH
HOH
2167
A
HOH
2168
2
HOH
HOH
2168
A
HOH
2169
2
HOH
HOH
2169
A
HOH
2170
2
HOH
HOH
2170
A
HOH
2171
2
HOH
HOH
2171
A
HOH
2172
2
HOH
HOH
2172
A
HOH
2173
2
HOH
HOH
2173
A
HOH
2174
2
HOH
HOH
2174
A
HOH
2175
2
HOH
HOH
2175
A
HOH
2176
2
HOH
HOH
2176
A
HOH
2177
2
HOH
HOH
2177
A
HOH
2178
2
HOH
HOH
2178
A
HOH
2179
2
HOH
HOH
2179
A
HOH
2180
2
HOH
HOH
2180
A
HOH
2181
2
HOH
HOH
2181
A
HOH
2182
2
HOH
HOH
2182
A
HOH
2183
2
HOH
HOH
2183
A
HOH
2184
2
HOH
HOH
2184
A
HOH
2185
2
HOH
HOH
2185
A
HOH
2186
2
HOH
HOH
2186
A
HOH
2187
2
HOH
HOH
2187
A
HOH
2188
2
HOH
HOH
2188
A
HOH
2189
2
HOH
HOH
2189
A
HOH
2190
2
HOH
HOH
2190
A
HOH
2191
2
HOH
HOH
2191
A
HOH
2192
2
HOH
HOH
2192
A
HOH
2193
2
HOH
HOH
2193
A
HOH
2194
2
HOH
HOH
2194
A
HOH
2195
2
HOH
HOH
2195
A
HOH
2196
2
HOH
HOH
2196
A
HOH
2197
2
HOH
HOH
2197
A
HOH
2198
2
HOH
HOH
2198
A
HOH
2199
2
HOH
HOH
2199
A
HOH
2200
2
HOH
HOH
2200
A
HOH
2201
2
HOH
HOH
2201
A
HOH
2202
2
HOH
HOH
2202
A
HOH
2203
2
HOH
HOH
2203
A
HOH
2204
2
HOH
HOH
2204
A
HOH
2205
2
HOH
HOH
2205
A
HOH
2206
2
HOH
HOH
2206
A
HOH
2207
2
HOH
HOH
2207
A
HOH
2208
2
HOH
HOH
2208
A
HOH
2209
2
HOH
HOH
2209
A
HOH
2210
2
HOH
HOH
2210
A
HOH
2211
2
HOH
HOH
2211
A
HOH
2212
2
HOH
HOH
2212
A
HOH
2213
2
HOH
HOH
2213
A
HOH
2214
2
HOH
HOH
2214
A
HOH
2215
2
HOH
HOH
2215
A
HOH
2216
2
HOH
HOH
2216
A
HOH
2217
2
HOH
HOH
2217
A
HOH
2218
2
HOH
HOH
2218
A
HOH
2219
2
HOH
HOH
2219
A
HOH
2220
2
HOH
HOH
2220
A
HOH
2221
2
HOH
HOH
2221
A
HOH
2222
2
HOH
HOH
2222
A
HOH
2223
2
HOH
HOH
2223
A
HOH
2224
2
HOH
HOH
2224
A
HOH
2225
2
HOH
HOH
2225
A
HOH
2226
2
HOH
HOH
2226
A
HOH
2227
2
HOH
HOH
2227
A
HOH
2228
2
HOH
HOH
2228
A
HOH
2229
2
HOH
HOH
2229
A
HOH
2230
2
HOH
HOH
2230
A
HOH
2231
2
HOH
HOH
2231
A
HOH
2232
2
HOH
HOH
2232
A
HOH
2233
2
HOH
HOH
2233
A
HOH
2234
2
HOH
HOH
2234
A
HOH
2235
2
HOH
HOH
2235
A
HOH
2236
2
HOH
HOH
2236
A
HOH
2237
2
HOH
HOH
2237
A
HOH
2238
2
HOH
HOH
2238
A
HOH
2239
2
HOH
HOH
2239
A
HOH
2240
2
HOH
HOH
2240
A
HOH
2241
2
HOH
HOH
2241
A
HOH
2242
2
HOH
HOH
2242
A
HOH
2243
2
HOH
HOH
2243
A
HOH
2244
2
HOH
HOH
2244
A
HOH
2245
2
HOH
HOH
2245
A
HOH
2246
2
HOH
HOH
2246
A
HOH
2247
2
HOH
HOH
2247
A
HOH
2248
2
HOH
HOH
2248
A
HOH
2249
2
HOH
HOH
2249
A
HOH
2250
2
HOH
HOH
2250
A
HOH
2251
2
HOH
HOH
2251
A
HOH
2252
2
HOH
HOH
2252
A
HOH
2253
2
HOH
HOH
2253
A
HOH
2254
2
HOH
HOH
2254
A
HOH
2255
2
HOH
HOH
2255
A
HOH
2256
2
HOH
HOH
2256
A
HOH
2257
2
HOH
HOH
2257
A
HOH
2258
2
HOH
HOH
2258
A
HOH
2259
2
HOH
HOH
2259
A
HOH
2260
2
HOH
HOH
2260
A
HOH
2261
2
HOH
HOH
2261
A
HOH
2262
2
HOH
HOH
2262
A
HOH
2263
2
HOH
HOH
2263
A
HOH
2264
2
HOH
HOH
2264
A
HOH
2265
2
HOH
HOH
2265
A
HOH
2266
2
HOH
HOH
2266
A
HOH
2267
2
HOH
HOH
2267
A
HOH
2268
2
HOH
HOH
2268
A
HOH
2269
2
HOH
HOH
2269
A
HOH
2270
2
HOH
HOH
2270
A
HOH
2271
2
HOH
HOH
2271
A
HOH
2272
2
HOH
HOH
2272
A
HOH
2273
2
HOH
HOH
2273
A
HOH
2274
2
HOH
HOH
2274
A
HOH
2275
2
HOH
HOH
2275
A
HOH
2276
2
HOH
HOH
2276
A
HOH
2277
2
HOH
HOH
2277
A
HOH
2278
2
HOH
HOH
2278
A
HOH
2279
2
HOH
HOH
2279
A
HOH
2280
2
HOH
HOH
2280
A
HOH
2281
2
HOH
HOH
2281
A
HOH
2282
2
HOH
HOH
2282
A
HOH
2283
2
HOH
HOH
2283
A
HOH
2284
2
HOH
HOH
2284
A
HOH
2285
2
HOH
HOH
2285
A
HOH
2286
2
HOH
HOH
2286
A
HOH
2287
2
HOH
HOH
2287
A
HOH
2288
2
HOH
HOH
2288
A
HOH
2289
2
HOH
HOH
2289
A
HOH
2290
2
HOH
HOH
2290
A
HOH
2291
2
HOH
HOH
2291
A
HOH
2292
2
HOH
HOH
2292
A
HOH
2293
2
HOH
HOH
2293
A
HOH
2294
2
HOH
HOH
2294
A
HOH
2295
2
HOH
HOH
2295
A
HOH
2296
2
HOH
HOH
2296
A
HOH
2297
2
HOH
HOH
2297
A
HOH
2298
2
HOH
HOH
2298
A
HOH
2299
2
HOH
HOH
2299
A
HOH
2300
2
HOH
HOH
2300
A
HOH
2301
2
HOH
HOH
2301
A
HOH
2302
2
HOH
HOH
2302
A
HOH
2303
2
HOH
HOH
2303
A
HOH
2304
2
HOH
HOH
2304
A
HOH
2305
2
HOH
HOH
2305
A
HOH
2306
2
HOH
HOH
2306
A
HOH
2307
2
HOH
HOH
2307
A
HOH
2308
2
HOH
HOH
2308
A
HOH
2309
2
HOH
HOH
2309
A
HOH
2310
2
HOH
HOH
2310
A
HOH
2311
2
HOH
HOH
2311
A
HOH
2312
2
HOH
HOH
2312
A
HOH
2313
2
HOH
HOH
2313
A
HOH
2314
2
HOH
HOH
2314
A
HOH
2315
2
HOH
HOH
2315
A
HOH
2316
2
HOH
HOH
2316
A
HOH
2317
2
HOH
HOH
2317
A
HOH
2318
2
HOH
HOH
2318
A
HOH
2319
2
HOH
HOH
2319
A
HOH
2320
2
HOH
HOH
2320
A
HOH
2321
2
HOH
HOH
2321
A
HOH
2322
2
HOH
HOH
2322
A
HOH
2323
2
HOH
HOH
2323
A
HOH
2324
2
HOH
HOH
2324
A
HOH
2325
2
HOH
HOH
2325
A
HOH
2326
2
HOH
HOH
2326
A
HOH
2327
2
HOH
HOH
2327
A
HOH
2328
2
HOH
HOH
2328
A
HOH
2329
2
HOH
HOH
2329
A
HOH
2330
2
HOH
HOH
2330
A
HOH
2331
2
HOH
HOH
2331
A
HOH
2332
2
HOH
HOH
2332
A
HOH
2333
2
HOH
HOH
2333
A
HOH
2334
2
HOH
HOH
2334
A
n
1
1
A
SER
2
n
2
SER
2
A
ALA
3
n
3
ALA
3
A
TYR
4
n
4
TYR
4
A
ARG
5
n
5
ARG
5
A
HIS
6
n
6
HIS
6
A
ALA
7
n
7
ALA
7
A
VAL
8
n
8
VAL
8
A
GLU
9
n
9
GLU
9
A
ARG
10
n
10
ARG
10
A
MSE
11
n
11
MSE
11
A
ASP
12
n
12
ASP
12
A
SER
13
n
13
SER
13
A
SER
14
n
14
SER
14
A
ASP
15
n
15
ASP
15
A
LEU
16
n
16
LEU
16
A
ALA
17
n
17
ALA
17
A
CYS
18
n
18
CYS
18
A
GLY
19
n
19
GLY
19
A
VAL
20
n
20
VAL
20
A
VAL
21
n
21
VAL
21
A
LEU
22
n
22
LEU
22
A
HIS
23
n
23
HIS
23
A
SER
24
n
24
SER
24
A
ALA
25
n
25
ALA
25
A
PRO
26
n
26
PRO
26
A
GLY
27
n
27
GLY
27
A
TYR
28
n
28
TYR
28
A
PRO
29
n
29
PRO
29
A
ALA
30
n
30
ALA
30
A
PHE
31
n
31
PHE
31
A
PRO
32
n
32
PRO
32
A
VAL
33
n
33
VAL
33
A
ARG
34
n
34
ARG
34
A
LEU
35
n
35
LEU
35
A
ALA
36
n
36
ALA
36
A
THR
37
n
37
THR
37
A
GLU
38
n
38
GLU
38
A
ILE
39
n
39
ILE
39
A
PHE
40
n
40
PHE
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
ALA
45
n
45
ALA
45
A
ARG
46
n
46
ARG
46
A
LEU
47
n
47
LEU
47
A
PRO
48
n
48
PRO
48
A
GLY
49
n
49
GLY
49
A
ASP
50
n
50
ASP
50
A
GLY
51
n
51
GLY
51
A
PRO
52
n
52
PRO
52
A
VAL
53
n
53
VAL
53
A
THR
54
n
54
THR
54
A
LEU
55
n
55
LEU
55
A
TRP
56
n
56
TRP
56
A
ASP
57
n
57
ASP
57
A
PRO
58
n
58
PRO
58
A
CYS
59
n
59
CYS
59
A
CYS
60
n
60
CYS
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
GLY
63
n
63
GLY
63
A
TYR
64
n
64
TYR
64
A
LEU
65
n
65
LEU
65
A
LEU
66
n
66
LEU
66
A
THR
67
n
67
THR
67
A
VAL
68
n
68
VAL
68
A
LEU
69
n
69
LEU
69
A
GLY
70
n
70
GLY
70
A
LEU
71
n
71
LEU
71
A
LEU
72
n
72
LEU
72
A
HIS
73
n
73
HIS
73
A
ARG
74
n
74
ARG
74
A
ARG
75
n
75
ARG
75
A
SER
76
n
76
SER
76
A
LEU
77
n
77
LEU
77
A
ARG
78
n
78
ARG
78
A
GLN
79
n
79
GLN
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
ALA
82
n
82
ALA
82
A
SER
83
n
83
SER
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
ASP
86
n
86
ASP
86
A
PRO
87
n
87
PRO
87
A
ALA
88
n
88
ALA
88
A
PRO
89
n
89
PRO
89
A
LEU
90
n
90
LEU
90
A
GLU
91
n
91
GLU
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
ALA
94
n
94
ALA
94
A
LYS
95
n
95
LYS
95
A
ASN
96
n
96
ASN
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
SER
101
n
101
SER
101
A
PRO
102
n
102
PRO
102
A
ALA
103
n
103
ALA
103
A
GLY
104
n
104
GLY
104
A
LEU
105
n
105
LEU
105
A
THR
106
n
106
THR
106
A
ALA
107
n
107
ALA
107
A
ARG
108
n
108
ARG
108
A
GLU
109
n
109
GLU
109
A
LEU
110
n
110
LEU
110
A
GLU
111
n
111
GLU
111
A
ARG
112
n
112
ARG
112
A
ARG
113
n
113
ARG
113
A
GLU
114
n
114
GLU
114
A
GLN
115
n
115
GLN
115
A
SER
116
n
116
SER
116
A
GLU
117
n
117
GLU
117
A
ARG
118
n
118
ARG
118
A
PHE
119
n
119
PHE
119
A
GLY
120
n
120
GLY
120
A
LYS
121
n
121
LYS
121
A
PRO
122
n
122
PRO
122
A
SER
123
n
123
SER
123
A
TYR
124
n
124
TYR
124
A
LEU
125
n
125
LEU
125
A
GLU
126
n
126
GLU
126
A
ALA
127
n
127
ALA
127
A
ALA
128
n
128
ALA
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
ALA
131
n
131
ALA
131
A
ARG
132
n
132
ARG
132
A
ARG
133
n
133
ARG
133
A
LEU
134
n
134
LEU
134
A
ARG
135
n
135
ARG
135
A
GLU
136
n
136
GLU
136
A
ARG
137
n
137
ARG
137
A
LEU
138
n
138
LEU
138
A
THR
139
n
139
THR
139
A
ALA
140
n
140
ALA
140
A
GLU
141
n
141
GLU
141
A
GLY
142
n
142
GLY
142
A
GLY
143
n
143
GLY
143
A
ALA
144
n
144
ALA
144
A
LEU
145
n
145
LEU
145
A
PRO
146
n
146
PRO
146
A
CYS
147
n
147
CYS
147
A
ALA
148
n
148
ALA
148
A
ILE
149
n
149
ILE
149
A
ARG
150
n
150
ARG
150
A
THR
151
n
151
THR
151
A
ALA
152
n
152
ALA
152
A
ASP
153
n
153
ASP
153
A
VAL
154
n
154
VAL
154
A
PHE
155
n
155
PHE
155
A
ASP
156
n
156
ASP
156
A
PRO
157
n
157
PRO
157
A
ARG
158
n
158
ARG
158
A
ALA
159
n
159
ALA
159
A
LEU
160
n
160
LEU
160
A
SER
161
n
161
SER
161
A
ALA
162
n
162
ALA
162
A
VAL
163
n
163
VAL
163
A
LEU
164
n
164
LEU
164
A
ALA
165
n
165
ALA
165
A
GLY
166
n
166
GLY
166
A
SER
167
n
167
SER
167
A
ALA
168
n
168
ALA
168
A
PRO
169
n
169
PRO
169
A
ASP
170
n
170
ASP
170
A
VAL
171
n
171
VAL
171
A
VAL
172
n
172
VAL
172
A
LEU
173
n
173
LEU
173
A
THR
174
n
174
THR
174
A
ASP
175
n
175
ASP
175
A
LEU
176
n
176
LEU
176
A
PRO
177
n
177
PRO
177
A
TYR
178
n
178
TYR
178
A
GLY
179
n
179
GLY
179
A
GLU
180
n
180
GLU
180
A
ARG
181
n
181
ARG
181
A
THR
182
n
182
THR
182
A
HIS
183
n
183
HIS
183
A
TRP
184
n
184
TRP
184
A
GLU
185
n
185
GLU
185
A
GLY
186
n
186
GLY
186
A
GLN
187
n
187
GLN
187
A
VAL
188
n
188
VAL
188
A
PRO
189
n
189
PRO
189
A
GLY
190
n
190
GLY
190
A
GLN
191
n
191
GLN
191
A
PRO
192
n
192
PRO
192
A
VAL
193
n
193
VAL
193
A
ALA
194
n
194
ALA
194
A
GLY
195
n
195
GLY
195
A
LEU
196
n
196
LEU
196
A
LEU
197
n
197
LEU
197
A
ARG
198
n
198
ARG
198
A
SER
199
n
199
SER
199
A
LEU
200
n
200
LEU
200
A
ALA
201
n
201
ALA
201
A
SER
202
n
202
SER
202
A
ALA
203
n
203
ALA
203
A
LEU
204
n
204
LEU
204
A
PRO
205
n
205
PRO
205
A
ALA
206
n
206
ALA
206
A
HIS
207
n
207
HIS
207
A
ALA
208
n
208
ALA
208
A
VAL
209
n
209
VAL
209
A
ILE
210
n
210
ILE
210
A
ALA
211
n
211
ALA
211
A
VAL
212
n
212
VAL
212
A
THR
213
n
213
THR
213
A
ASP
214
n
214
ASP
214
A
ARG
215
n
215
ARG
215
A
SER
216
n
216
SER
216
A
ARG
217
n
217
ARG
217
A
LYS
218
n
218
LYS
218
A
ILE
219
n
219
ILE
219
A
PRO
220
n
220
PRO
220
A
VAL
221
n
221
VAL
221
A
ALA
222
n
222
ALA
222
A
PRO
223
n
223
PRO
223
A
VAL
224
n
224
VAL
224
A
LYS
225
n
225
LYS
225
A
ALA
226
n
226
ALA
226
A
LEU
227
n
227
LEU
227
A
GLU
228
n
228
GLU
228
A
ARG
229
n
229
ARG
229
A
LEU
230
n
230
LEU
230
A
LYS
231
n
231
LYS
231
A
ILE
232
n
232
ILE
232
A
GLY
233
n
233
GLY
233
A
THR
234
n
234
THR
234
A
ARG
235
n
235
ARG
235
A
SER
236
n
236
SER
236
A
ALA
237
n
237
ALA
237
A
VAL
238
n
238
VAL
238
A
MSE
239
n
239
MSE
239
A
VAL
240
n
240
VAL
240
A
ARG
241
n
241
ARG
241
A
ALA
242
n
242
ALA
242
A
ALA
243
n
243
ALA
243
A
ASP
244
n
244
ASP
244
A
VAL
245
n
245
VAL
245
A
LEU
246
n
246
LEU
246
A
GLU
247
n
247
GLU
247
A
ALA
248
n
248
ALA
248
A
GLY
249
n
249
GLY
249
A
PRO
250
n
250
PRO
250
A
author_and_software_defined_assembly
PQS
1
monomeric
A
MSE
11
SELENOMETHIONINE
A
MSE
11
MET
A
MSE
239
SELENOMETHIONINE
A
MSE
239
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
148
A
N
ALA
148
A
O
VAL
80
A
O
VAL
80
A
N
ARG
78
A
N
ARG
78
A
O
VAL
53
A
O
VAL
53
A
N
TRP
56
A
N
TRP
56
A
O
VAL
171
A
O
VAL
171
A
N
VAL
172
A
N
VAL
172
A
O
VAL
209
A
O
VAL
209
A
N
ASP
214
A
N
ASP
214
A
O
SER
236
A
O
SER
236
A
N
MSE
239
A
N
MSE
239
A
O
GLU
228
A
O
GLU
228
1
A
MSE
1
A
MSE
1
1
Y
1
A
A
O
O
HOH
HOH
2233
2236
2.14
1
5.95
0.90
118.30
124.25
A
A
A
CB
CG
OD2
ASP
ASP
ASP
50
50
50
N
1
A
A
O
O
HOH
HOH
2098
2258
1.69
1_555
2_647
1
A
A
O
O
HOH
HOH
2213
2258
2.15
1_555
2_647
1
A
VAL
20
-99.12
-75.02
9.096
-0.48
0.00
-0.01
0.77
0.00
-0.29
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.202
0.169
0.170
1.50
37.8
1288
31681
3.9
96.5
1.232
0.047
RANDOM
1
THROUGHOUT
MAD
0.082
1.50
37.8
334
2201
0
0
1867
1.500
37.800
1O9G
64711
2.000
0.03400
1
38.7000
4.300
97.0
1.50
1.52
6.600
0.20000
1
3.40
90.0
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
RRNA METHYLTRANSFERASE
rRNA methyltransferase aviRa from Streptomyces viridochromogenes at 1.5A
1
N
N
2
N
N
A
SER
13
A
SER
13
HELX_P
A
ALA
17
A
ALA
17
5
1
5
A
PRO
32
A
PRO
32
HELX_P
A
ARG
46
A
ARG
46
1
2
15
A
GLY
63
A
GLY
63
HELX_P
A
HIS
73
A
HIS
73
1
3
11
A
ASP
86
A
ASP
86
HELX_P
A
LEU
99
A
LEU
99
1
4
14
A
SER
101
A
SER
101
HELX_P
A
GLY
120
A
GLY
120
1
5
20
A
LYS
121
A
LYS
121
HELX_P
A
GLU
141
A
GLU
141
1
6
21
A
ASP
156
A
ASP
156
HELX_P
A
ARG
158
A
ARG
158
5
7
3
A
ALA
159
A
ALA
159
HELX_P
A
ALA
165
A
ALA
165
1
8
7
A
PRO
177
A
PRO
177
HELX_P
A
ARG
181
A
ARG
181
5
9
5
A
PRO
189
A
PRO
189
HELX_P
A
LEU
204
A
LEU
204
1
10
16
A
ALA
242
A
ALA
242
HELX_P
A
ALA
248
A
ALA
248
1
11
7
covale
1.329
both
A
ARG
10
A
C
ARG
10
1_555
A
MSE
11
A
N
MSE
11
1_555
covale
1.329
both
A
MSE
11
A
C
MSE
11
1_555
A
ASP
12
A
N
ASP
12
1_555
covale
1.335
both
A
VAL
238
A
C
VAL
238
1_555
A
MSE
239
A
N
MSE
239
1_555
covale
1.325
both
A
MSE
239
A
C
MSE
239
1_555
A
VAL
240
A
N
VAL
240
1_555
TRANSFERASE
TRANSFERASE, ANTIBIOTIC RESISTANCE; RRNA-METHYLTRANSFERASE, SE-MAD
A
ALA
222
A
ALA
222
1
A
PRO
223
A
PRO
223
9.92
Q9F5K5
UNP
1
Q9F5K5
1
250
1O9G
1
250
Q9F5K5
A
1
1
250
1
ILE
engineered mutation
MSE
11
1O9G
A
Q9F5K5
UNP
11
11
1
SER
conflict
GLU
180
1O9G
A
Q9F5K5
UNP
180
180
1
ALA
conflict
ARG
181
1O9G
A
Q9F5K5
UNP
181
181
1
ARG
conflict
THR
182
1O9G
A
Q9F5K5
UNP
182
182
1
THR
conflict
HIS
183
1O9G
A
Q9F5K5
UNP
183
183
1
GLY
conflict
TRP
184
1O9G
A
Q9F5K5
UNP
184
184
1
LYS
conflict
GLU
185
1O9G
A
Q9F5K5
UNP
185
185
1
ARG
conflict
GLN
187
1O9G
A
Q9F5K5
UNP
187
187
1
CYS
conflict
VAL
188
1O9G
A
Q9F5K5
UNP
188
188
1
ARG
engineered mutation
GLY
190
1O9G
A
Q9F5K5
UNP
190
190
1
SER
conflict
GLN
191
1O9G
A
Q9F5K5
UNP
191
191
1
ARG
conflict
PRO
192
1O9G
A
Q9F5K5
UNP
192
192
1
TRP
conflict
VAL
193
1O9G
A
Q9F5K5
UNP
193
193
1
ARG
conflict
ALA
194
1O9G
A
Q9F5K5
UNP
194
194
1
ALA
conflict
GLY
195
1O9G
A
Q9F5K5
UNP
195
195
1
LEU
engineered mutation
MSE
239
1O9G
A
Q9F5K5
UNP
239
239
7
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
CYS
147
A
CYS
147
A
THR
151
A
THR
151
A
LEU
77
A
LEU
77
A
ASP
84
A
ASP
84
A
VAL
53
A
VAL
53
A
ASP
57
A
ASP
57
A
VAL
171
A
VAL
171
A
ASP
175
A
ASP
175
A
VAL
209
A
VAL
209
A
ASP
214
A
ASP
214
A
ARG
235
A
ARG
235
A
ARG
241
A
ARG
241
A
GLU
228
A
GLU
228
A
ILE
232
A
ILE
232
4
P 1 21 1