0.030488 0.000000 0.000000 0.000000 0.021482 0.000000 0.000000 0.000000 0.011260 0.00000 0.00000 0.00000 Russell, R. Murray, J.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 32.800 46.550 88.810 C4 H9 N O3 119.119 4-AMINO-2-HYDROXYBUTANOIC ACID non-polymer C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C6 H14 N2 O4 178.186 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 2,6-diamino-2,6-dideoxy-alpha-D-glucose; 2,6-diamino-2,6-dideoxy-D-glucose; 2,6-diamino-2,6-dideoxy-glucose D-saccharide, alpha linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C6 H17 N3 131.219 1-(AMINOETHYL)AMINO-4-AMINOBUTANE PA(24) non-polymer C6 H14 N2 O2 146.188 PAROMOMYCIN (RING 2) non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N N N 2 N C N 3 N O N 4 R C N 5 N O N 6 N C N 7 N C N 8 N O N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N O N 19 N P N 20 N O N 21 N O N 22 N O N 23 N C N 24 R C N 25 N O N 26 S C N 27 N O N 28 R C N 29 N O N 30 R C Y 31 N N Y 32 N C Y 33 N N Y 34 N C Y 35 N C N 36 N N Y 37 N N Y 38 N C Y 39 N N Y 40 N C N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 R C N 56 N O N 57 S C N 58 N O N 59 R C N 60 N N N 61 R C N 62 N O N 63 S C N 64 N O N 65 N C N 66 N N N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N O N 82 N P N 83 N O N 84 N O N 85 N O N 86 N C N 87 R C N 88 N O N 89 S C N 90 N O N 91 R C N 92 N O N 93 R C N 94 N N N 95 N C N 96 N O N 97 N N N 98 N C N 99 N N N 100 N C N 101 N C N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N O N 117 N P N 118 N O N 119 N O N 120 N O N 121 N C N 122 R C N 123 N O N 124 S C N 125 N O N 126 R C N 127 N O N 128 R C Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N C N 134 N O N 135 N N N 136 N C N 137 N N N 138 N N Y 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N H N 156 N H N 157 N N N 158 N C N 159 N C N 160 N N N 161 N C N 162 N C N 163 N C N 164 N C N 165 N N N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 R C N 184 N N N 185 S C N 186 N O N 187 S C N 188 N O N 189 N C N 190 S C N 191 N N N 192 N C N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N P N 209 N O N 210 N O N 211 N O N 212 N C N 213 R C N 214 N O N 215 S C N 216 N O N 217 R C N 218 N O N 219 R C N 220 N N N 221 N C N 222 N O N 223 N N N 224 N C N 225 N O N 226 N C N 227 N C N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 1 N sing N 2 N sing N 3 N sing N 4 N doub N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing Y 41 N sing Y 42 N sing Y 43 N doub N 44 N sing Y 45 N sing Y 46 N sing Y 47 N doub N 48 N sing Y 49 N doub N 50 N sing N 51 N sing Y 52 N sing Y 53 N doub N 54 N sing Y 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing Y 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing N 147 N sing Y 148 N doub N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N doub N 242 N sing N 243 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 125 3410 10.1021/JA029736H 12643685 The Complex of a Designer Antibiotic with a Model Aminoacyl Site of the 30S Ribosomal Subunit Revealed by X-Ray Crystallography 2003 10.2210/pdb1o9m/pdb pdb_00001o9m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273.0 1 CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 ID29 ESRF 0.9795 SYNCHROTRON ESRF BEAMLINE ID29 7048.259 EUBACTERIAL A-SITE 2 syn polymer 178.186 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose 1 man non-polymer 146.188 PAROMOMYCIN (RING 2) 1 syn non-polymer 131.219 1-(AMINOETHYL)AMINO-4-AMINOBUTANE 1 syn non-polymer 119.119 4-AMINO-2-HYDROXYBUTANOIC ACID 1 syn non-polymer 18.015 water 63 nat water no no CGCGUCACACCGGUGAAGUCGC CGCGUCACACCGGUGAAGUCGC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n 1 2.40 48.85 6.40 MPD, NACL, MGSO4, GLYCEROL, NA CACODYLATE, pH 6.40 0.569 1 19 A 1403 B 1498 -4.368 A_G1403:C1498_B 1 -6.556 -0.581 0.267 -0.409 -2.884 1 19 A 1404 B 1497 1.337 A_C1404:G1497_B 2 -7.979 0.027 0.302 -0.141 -1.092 1 19 A 1405 B 1496 -3.307 A_G1405:C1496_B 3 -4.779 0.405 0.035 -0.109 2.967 1 19 A 1407 B 1494 -1.973 A_C1407:G1494_B 4 -1.338 0.277 -0.081 -0.317 8.611 1 19 A 1409 B 1491 0.871 A_C1409:G1491_B 5 -22.657 0.003 0.037 -0.126 0.667 1 20 A 1410 B 1490 2.585 A_A1410:U1490_B 6 -16.865 0.437 0.134 0.027 6.391 1 19 A 1411 B 1489 6.135 A_C1411:G1489_B 7 -18.838 0.225 0.264 -0.073 -0.731 1 19 A 1412 B 1488 0.281 A_C1412:G1488_B 8 -12.754 0.178 0.182 -0.117 -1.579 1 19 A 1488 B 1412 0.589 A_G1488:C1412_B 9 -14.532 -0.170 0.203 -0.087 -4.334 1 19 A 1489 B 1411 1.476 A_G1489:C1411_B 10 -15.333 -0.760 -0.071 -0.252 -7.650 1 20 A 1490 B 1410 1.018 A_U1490:A1410_B 11 -15.334 0.599 0.327 -0.391 -4.514 1 19 A 1491 B 1409 -0.460 A_G1491:C1409_B 12 -13.911 -0.011 0.763 -0.527 -25.657 A 1493 B 1408 79.607 A_A1493:A1408_B 13 -26.049 -2.936 0.885 -2.754 9.167 1 19 A 1494 B 1407 -1.576 A_G1494:C1407_B 14 -7.417 0.455 -0.136 -0.302 -2.263 1 16 A 1495 B 1406 1.660 A_U1495:U1406_B 15 -9.948 -1.589 0.190 -2.171 4.415 1 19 A 1496 B 1405 0.211 A_C1496:G1405_B 16 -14.206 -0.141 0.184 -0.475 -4.234 1 19 A 1497 B 1404 4.103 A_G1497:C1404_B 17 -8.191 0.412 0.159 -0.251 1.642 1 19 A 1498 B 1403 -3.306 A_C1498:G1403_B 18 -3.935 0.846 -0.045 -0.457 3.241 36.042 A A 1403 1404 4.642 B B 1498 1497 3.408 2.869 0.153 -1.975 AA_G1403C1404:G1497C1498_BB 1 -0.985 1.593 35.918 -3.607 -0.390 2.685 32.383 A A 1404 1405 13.365 B B 1497 1496 3.181 7.389 -0.799 -1.700 AA_C1404G1405:C1496G1497_BB 2 1.448 -2.619 31.518 -4.233 1.665 5.365 80.912 A A 1407 1409 13.382 B B 1494 1491 6.237 17.254 1.835 -3.369 AA_C1407C1409:G1491G1494_BB 3 -7.947 6.163 79.026 -3.400 -1.785 2.528 38.259 A A 1409 1410 22.880 B B 1491 1490 3.278 14.639 -0.195 -1.407 AA_C1409A1410:U1490G1491_BB 4 -0.838 1.309 35.435 -3.848 0.200 3.102 28.745 A A 1410 1411 -0.242 B B 1490 1489 3.068 -0.120 0.917 -2.044 AA_A1410C1411:G1489U1490_BB 5 0.867 -1.746 28.732 -4.092 -1.663 2.935 29.699 A A 1411 1412 13.647 B B 1489 1488 3.434 6.929 -0.896 -1.999 AA_C1411C1412:G1488G1489_BB 6 -1.856 3.656 28.838 -5.339 1.363 2.689 27.984 A A 1412 1488 13.794 B B 1488 1412 3.192 6.606 -0.317 -1.852 AA_C1412G1488:C1412G1488_BB 7 -1.681 3.511 27.157 -5.259 0.292 2.849 33.778 A A 1488 1489 13.401 B B 1412 1411 3.214 7.721 -0.090 -1.262 AA_G1488G1489:C1411C1412_BB 8 0.881 -1.529 32.898 -3.347 0.289 2.722 39.095 A A 1489 1490 18.735 B B 1411 1410 3.253 12.338 0.590 -1.197 AA_G1489U1490:A1410C1411_BB 9 -0.777 1.179 37.161 -3.181 -0.970 2.309 28.830 A A 1490 1491 18.760 B B 1410 1409 2.935 9.184 0.302 -1.518 AA_U1490G1491:C1409A1410_BB 10 -0.431 0.880 27.355 -4.737 -0.685 2.801 -164.880 A A 1491 1493 -2.608 B B 1409 1408 2.659 5.068 -1.119 2.280 AA_G1491A1493:A1408C1409_BB 11 152.290 78.363 -113.120 -1.177 0.242 0.551 176.701 A A 1493 1494 54.691 B B 1408 1407 1.849 109.016 5.044 0.543 AA_A1493G1494:C1407A1408_BB 12 -130.756 65.598 140.443 0.138 -2.683 2.626 32.075 A A 1494 1495 12.614 B B 1407 1406 3.237 6.818 0.012 -1.911 AA_G1494U1495:U1406C1407_BB 13 -9.451 17.485 29.935 -4.598 -1.601 3.130 40.308 A A 1495 1496 -3.860 B B 1406 1405 3.064 -2.658 -0.344 -1.118 AA_U1495C1496:G1405U1406_BB 14 -0.235 0.341 40.223 -1.338 0.475 2.820 30.342 A A 1496 1497 13.835 B B 1405 1404 3.357 7.176 -0.200 -1.917 AA_C1496G1497:C1404G1405_BB 15 0.346 -0.667 29.499 -5.046 0.449 3.092 32.962 A A 1497 1498 3.263 B B 1404 1403 3.231 1.850 -0.265 -2.058 AA_G1497C1498:G1403C1404_BB 16 2.038 -3.595 32.850 -3.932 0.802 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2003-03-27 1 1 2011-05-08 1 2 2011-07-13 1 3 2020-07-29 1 4 2023-12-13 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DGlcpN[6N]a a-D-GlcpN6N PDBE Y PDBE 2002-12-17 REL BDG 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose PA2 PAROMOMYCIN (RING 2) P24 1-(AMINOETHYL)AMINO-4-AMINOBUTANE 42B 4-AMINO-2-HYDROXYBUTANOIC ACID HOH water 562 ESCHERICHIA COLI sample 1J7T PDB ENTRY 1J7T PDB experimental model BDG 2499 2 BDG BDG 2499 B PA2 2500 3 PA2 PA2 2500 B P24 2501 4 P24 P24 2501 B 42B 2502 5 42B 42B 2502 B HOH 2001 6 HOH HOH 2001 A HOH 2002 6 HOH HOH 2002 A HOH 2003 6 HOH HOH 2003 A HOH 2004 6 HOH HOH 2004 A HOH 2005 6 HOH HOH 2005 A HOH 2006 6 HOH HOH 2006 A HOH 2007 6 HOH HOH 2007 A HOH 2008 6 HOH HOH 2008 A HOH 2009 6 HOH HOH 2009 A HOH 2010 6 HOH HOH 2010 A HOH 2011 6 HOH HOH 2011 A HOH 2012 6 HOH HOH 2012 A HOH 2013 6 HOH HOH 2013 A HOH 2014 6 HOH HOH 2014 A HOH 2015 6 HOH HOH 2015 A HOH 2016 6 HOH HOH 2016 A HOH 2017 6 HOH HOH 2017 A HOH 2018 6 HOH HOH 2018 A HOH 2019 6 HOH HOH 2019 A HOH 2020 6 HOH HOH 2020 A HOH 2021 6 HOH HOH 2021 A HOH 2022 6 HOH HOH 2022 A HOH 2023 6 HOH HOH 2023 A HOH 2024 6 HOH HOH 2024 A HOH 2025 6 HOH HOH 2025 A HOH 2026 6 HOH HOH 2026 A HOH 2027 6 HOH HOH 2027 A HOH 2028 6 HOH HOH 2028 A HOH 2029 6 HOH HOH 2029 A HOH 2030 6 HOH HOH 2030 A HOH 2001 6 HOH HOH 2001 B HOH 2002 6 HOH HOH 2002 B HOH 2003 6 HOH HOH 2003 B HOH 2004 6 HOH HOH 2004 B HOH 2005 6 HOH HOH 2005 B HOH 2006 6 HOH HOH 2006 B HOH 2007 6 HOH HOH 2007 B HOH 2008 6 HOH HOH 2008 B HOH 2009 6 HOH HOH 2009 B HOH 2010 6 HOH HOH 2010 B HOH 2011 6 HOH HOH 2011 B HOH 2012 6 HOH HOH 2012 B HOH 2013 6 HOH HOH 2013 B HOH 2014 6 HOH HOH 2014 B HOH 2015 6 HOH HOH 2015 B HOH 2016 6 HOH HOH 2016 B HOH 2017 6 HOH HOH 2017 B HOH 2018 6 HOH HOH 2018 B HOH 2019 6 HOH HOH 2019 B HOH 2020 6 HOH HOH 2020 B HOH 2021 6 HOH HOH 2021 B HOH 2022 6 HOH HOH 2022 B HOH 2023 6 HOH HOH 2023 B HOH 2024 6 HOH HOH 2024 B HOH 2025 6 HOH HOH 2025 B HOH 2026 6 HOH HOH 2026 B HOH 2027 6 HOH HOH 2027 B HOH 2028 6 HOH HOH 2028 B HOH 2029 6 HOH HOH 2029 B HOH 2030 6 HOH HOH 2030 B HOH 2031 6 HOH HOH 2031 B HOH 2032 6 HOH HOH 2032 B HOH 2033 6 HOH HOH 2033 B n 1 1402 A G 1403 n 2 G 1403 A C 1404 n 3 C 1404 A G 1405 n 4 G 1405 A U 1406 n 5 U 1406 A C 1407 n 6 C 1407 A A 1408 n 7 A 1408 A C 1409 n 8 C 1409 A A 1410 n 9 A 1410 A C 1411 n 10 C 1411 A C 1412 n 11 C 1412 A G 1488 n 12 G 1488 A G 1489 n 13 G 1489 A U 1490 n 14 U 1490 A G 1491 n 15 G 1491 A A 1492 n 16 A 1492 A A 1493 n 17 A 1493 A G 1494 n 18 G 1494 A U 1495 n 19 U 1495 A C 1496 n 20 C 1496 A G 1497 n 21 G 1497 A C 1498 n 22 C 1498 A n 1 1402 B G 1403 n 2 G 1403 B C 1404 n 3 C 1404 B G 1405 n 4 G 1405 B U 1406 n 5 U 1406 B C 1407 n 6 C 1407 B A 1408 n 7 A 1408 B C 1409 n 8 C 1409 B A 1410 n 9 A 1410 B C 1411 n 10 C 1411 B C 1412 n 11 C 1412 B G 1488 n 12 G 1488 B G 1489 n 13 G 1489 B U 1490 n 14 U 1490 B G 1491 n 15 G 1491 B A 1492 n 16 A 1492 B A 1493 n 17 A 1493 B G 1494 n 18 G 1494 B U 1495 n 19 U 1495 B C 1496 n 20 C 1496 B G 1497 n 21 G 1497 B C 1498 n 22 C 1498 B author_and_software_defined_assembly PQS 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A P G 1403 A P G 2 1 Y 1 A OP1 G 1403 A OP1 G 2 1 Y 1 A OP2 G 1403 A OP2 G 2 1 Y 1 B P G 1403 B P G 2 1 Y 1 B OP1 G 1403 B OP1 G 2 1 Y 1 B OP2 G 1403 B OP2 G 2 1 Y 1 A C 1402 A C 1 1 Y 1 B C 1402 B C 1 1 Y 46.9 0.2981 0.2507 0.2507 2.4 30.0 563 5247 10.0 92.2 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1J7T 65 0.31 2.4 30.0 63 992 37 892 0 0.0057 1.05 68.9 2.400 30.000 1O9M 32243 0.06900 1 19.6000 6.000 94.5 2.40 2.49 1.900 0.58000 1 97.7 refinement CNS data reduction DENZO data scaling SCALEPACK phasing MOLREP The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography. 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N covale 1.456 one B BDG 2499 C O1 BDG 1_555 B PA2 2500 D C4 PA2 1_555 covale 1.445 one B PA2 2500 D O2 PA2 1_555 B P24 2501 E C2 P24 1_555 covale 1.774 one B PA2 2500 D N1 PA2 1_555 B 42B 2502 F C3 42B 1_555 hydrog WATSON-CRICK A G 1403 A N1 G 2 1_555 B C 1498 B N3 C 22 1_555 hydrog WATSON-CRICK A G 1403 A N2 G 2 1_555 B C 1498 B O2 C 22 1_555 hydrog WATSON-CRICK A G 1403 A O6 G 2 1_555 B C 1498 B N4 C 22 1_555 hydrog WATSON-CRICK A C 1404 A N3 C 3 1_555 B G 1497 B N1 G 21 1_555 hydrog WATSON-CRICK A C 1404 A N4 C 3 1_555 B G 1497 B O6 G 21 1_555 hydrog WATSON-CRICK A C 1404 A O2 C 3 1_555 B G 1497 B N2 G 21 1_555 hydrog WATSON-CRICK A G 1405 A N1 G 4 1_555 B C 1496 B N3 C 20 1_555 hydrog WATSON-CRICK A G 1405 A N2 G 4 1_555 B C 1496 B O2 C 20 1_555 hydrog WATSON-CRICK A G 1405 A O6 G 4 1_555 B C 1496 B N4 C 20 1_555 hydrog WATSON-CRICK A C 1407 A N3 C 6 1_555 B G 1494 B N1 G 18 1_555 hydrog WATSON-CRICK A C 1407 A N4 C 6 1_555 B G 1494 B O6 G 18 1_555 hydrog WATSON-CRICK A C 1407 A O2 C 6 1_555 B G 1494 B N2 G 18 1_555 hydrog WATSON-CRICK A C 1409 A N3 C 8 1_555 B G 1491 B N1 G 15 1_555 hydrog WATSON-CRICK A C 1409 A N4 C 8 1_555 B G 1491 B O6 G 15 1_555 hydrog WATSON-CRICK A C 1409 A O2 C 8 1_555 B G 1491 B N2 G 15 1_555 hydrog WATSON-CRICK A A 1410 A N1 A 9 1_555 B U 1490 B N3 U 14 1_555 hydrog WATSON-CRICK A A 1410 A N6 A 9 1_555 B U 1490 B O4 U 14 1_555 hydrog WATSON-CRICK A C 1411 A N3 C 10 1_555 B G 1489 B N1 G 13 1_555 hydrog WATSON-CRICK A C 1411 A N4 C 10 1_555 B G 1489 B O6 G 13 1_555 hydrog WATSON-CRICK A C 1411 A O2 C 10 1_555 B G 1489 B N2 G 13 1_555 hydrog WATSON-CRICK A C 1412 A N3 C 11 1_555 B G 1488 B N1 G 12 1_555 hydrog WATSON-CRICK A C 1412 A N4 C 11 1_555 B G 1488 B O6 G 12 1_555 hydrog WATSON-CRICK A C 1412 A O2 C 11 1_555 B G 1488 B N2 G 12 1_555 hydrog WATSON-CRICK A G 1488 A N1 G 12 1_555 B C 1412 B N3 C 11 1_555 hydrog WATSON-CRICK A G 1488 A N2 G 12 1_555 B C 1412 B O2 C 11 1_555 hydrog WATSON-CRICK A G 1488 A O6 G 12 1_555 B C 1412 B N4 C 11 1_555 hydrog WATSON-CRICK A G 1489 A N1 G 13 1_555 B C 1411 B N3 C 10 1_555 hydrog WATSON-CRICK A G 1489 A N2 G 13 1_555 B C 1411 B O2 C 10 1_555 hydrog WATSON-CRICK A G 1489 A O6 G 13 1_555 B C 1411 B N4 C 10 1_555 hydrog WATSON-CRICK A U 1490 A N3 U 14 1_555 B A 1410 B N1 A 9 1_555 hydrog WATSON-CRICK A U 1490 A O4 U 14 1_555 B A 1410 B N6 A 9 1_555 hydrog WATSON-CRICK A G 1491 A N1 G 15 1_555 B C 1409 B N3 C 8 1_555 hydrog WATSON-CRICK A G 1491 A N2 G 15 1_555 B C 1409 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1491 A O6 G 15 1_555 B C 1409 B N4 C 8 1_555 hydrog A-A MISPAIR A A 1493 A N6 A 17 1_555 B A 1408 B N1 A 7 1_555 hydrog A-C MISPAIR A A 1493 A N6 A 17 1_555 B C 1409 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1494 A N1 G 18 1_555 B C 1407 B N3 C 6 1_555 hydrog WATSON-CRICK A G 1494 A N2 G 18 1_555 B C 1407 B O2 C 6 1_555 hydrog WATSON-CRICK A G 1494 A O6 G 18 1_555 B C 1407 B N4 C 6 1_555 hydrog TYPE_16_PAIR A U 1495 A N3 U 19 1_555 B U 1406 B O2 U 5 1_555 hydrog TYPE_16_PAIR A U 1495 A O4 U 19 1_555 B U 1406 B N3 U 5 1_555 hydrog WATSON-CRICK A C 1496 A N3 C 20 1_555 B G 1405 B N1 G 4 1_555 hydrog WATSON-CRICK A C 1496 A N4 C 20 1_555 B G 1405 B O6 G 4 1_555 hydrog WATSON-CRICK A C 1496 A O2 C 20 1_555 B G 1405 B N2 G 4 1_555 hydrog WATSON-CRICK A G 1497 A N1 G 21 1_555 B C 1404 B N3 C 3 1_555 hydrog WATSON-CRICK A G 1497 A N2 G 21 1_555 B C 1404 B O2 C 3 1_555 hydrog WATSON-CRICK A G 1497 A O6 G 21 1_555 B C 1404 B N4 C 3 1_555 hydrog WATSON-CRICK A C 1498 A N3 C 22 1_555 B G 1403 B N1 G 2 1_555 hydrog WATSON-CRICK A C 1498 A N4 C 22 1_555 B G 1403 B O6 G 2 1_555 hydrog WATSON-CRICK A C 1498 A O2 C 22 1_555 B G 1403 B N2 G 2 1_555 ANTIBIOTIC/RNA ANTIBIOTIC/RNA, RNA-ANTIBIOTIC INTERACTIONS, A-SITE, ANTIBIOTIC-RNA complex 1O9M PDB 1 1O9M 1402 1412 1O9M 1402 1412 1O9M A 1 1 11 1488 1498 1O9M 1488 1498 1O9M A 1 12 22 1402 1412 1O9M 1402 1412 1O9M B 1 1 11 1488 1498 1O9M 1488 1498 1O9M B 1 12 22 19 P 21 21 21