0.011290 0.000000 0.000000 0.000000 0.011290 0.000000 0.000000 0.000000 0.014700 0.00000 0.00000 0.00000 Abergel, C. Walburger, A. Bouveret, E. Claverie, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 88.575 88.575 68.028 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 317 319 10.1107/s0907444900019739 11173492 Crystallization and preliminary crystallographic study of the peptidoglycan-associated lipoprotein from Escherichia coli. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 105.0 1 CCD 2001-12-15 ADSC CCD MAD M x-ray 1 0.9393 1.0 0.97953 1.0 0.97921 1.0 ID29 ESRF 0.9393,0.97953,0.97921 SYNCHROTRON ESRF BEAMLINE ID29 12315.746 PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN PERIPLASMIC DOMAIN, RESIDUES 65-137 1 man polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 86 nat water no no LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQIS IVSYGKEKPAVLGHDEAAYSKNRRAVLVY LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQIS IVSYGKEKPAVLGHDEAAYSKNRRAVLVY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample PERIPLASMIC DOMAIN 562 ESCHERICHIA COLI 469008 Escherichia coli BL21(DE3) PET14 1 2.8 56 6.00 MPD 40%, PEG 4000 10%, AMSO4 0.2M, IMIDAZOLE 10MM, MES BUFF, pH 6.00 entity_src_gen citation pdbx_database_status repository Initial release Database references Derived calculations Non-polymer description Other Refinement description Version format compliance Source and taxonomy Data collection Database references Other 1 0 2004-02-13 1 1 2014-02-05 1 2 2018-03-28 1 3 2019-10-09 _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _citation.page_last _citation.pdbx_database_id_DOI _citation.title _pdbx_database_status.status_code_sf PDBE Y PDBE 2003-01-20 REL REL 1 A O HOH 2025 6.85 SO4 SULFATE ION HOH water PROBABLY PLAYS A ROLE IN BACTERIAL ENVELOPE INTEGRITY. SHOWS VERY STRONG ASSOCIATION WITH PEPTIDOGLYCAN CORRESPONDS TO A TRUNCATED FORM OF THE PAL PROTEIN SO4 410 2 SO4 SO4 410 A SO4 411 2 SO4 SO4 411 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A n 1 44 A GLN 45 n 2 GLN 45 A GLN 46 n 3 GLN 46 A ASN 47 n 4 ASN 47 A ASN 48 n 5 ASN 48 A ILE 49 n 6 ILE 49 A VAL 50 n 7 VAL 50 A TYR 51 n 8 TYR 51 A PHE 52 n 9 PHE 52 A ASP 53 n 10 ASP 53 A LEU 54 n 11 LEU 54 A ASP 55 n 12 ASP 55 A LYS 56 n 13 LYS 56 A TYR 57 n 14 TYR 57 A ASP 58 n 15 ASP 58 A ILE 59 n 16 ILE 59 A ARG 60 n 17 ARG 60 A SER 61 n 18 SER 61 A ASP 62 n 19 ASP 62 A PHE 63 n 20 PHE 63 A ALA 64 n 21 ALA 64 A GLN 65 n 22 GLN 65 A MET 66 n 23 MET 66 A LEU 67 n 24 LEU 67 A ASP 68 n 25 ASP 68 A ALA 69 n 26 ALA 69 A HIS 70 n 27 HIS 70 A ALA 71 n 28 ALA 71 A ASN 72 n 29 ASN 72 A PHE 73 n 30 PHE 73 A LEU 74 n 31 LEU 74 A ARG 75 n 32 ARG 75 A SER 76 n 33 SER 76 A ASN 77 n 34 ASN 77 A PRO 78 n 35 PRO 78 A SER 79 n 36 SER 79 A TYR 80 n 37 TYR 80 A LYS 81 n 38 LYS 81 A VAL 82 n 39 VAL 82 A THR 83 n 40 THR 83 A VAL 84 n 41 VAL 84 A GLU 85 n 42 GLU 85 A GLY 86 n 43 GLY 86 A HIS 87 n 44 HIS 87 A ALA 88 n 45 ALA 88 A ASP 89 n 46 ASP 89 A GLU 90 n 47 GLU 90 A ARG 91 n 48 ARG 91 A GLY 92 n 49 GLY 92 A THR 93 n 50 THR 93 A PRO 94 n 51 PRO 94 A GLU 95 n 52 GLU 95 A TYR 96 n 53 TYR 96 A ASN 97 n 54 ASN 97 A ILE 98 n 55 ILE 98 A SER 99 n 56 SER 99 A LEU 100 n 57 LEU 100 A GLY 101 n 58 GLY 101 A GLU 102 n 59 GLU 102 A ARG 103 n 60 ARG 103 A ARG 104 n 61 ARG 104 A ALA 105 n 62 ALA 105 A ASN 106 n 63 ASN 106 A ALA 107 n 64 ALA 107 A VAL 108 n 65 VAL 108 A LYS 109 n 66 LYS 109 A MET 110 n 67 MET 110 A TYR 111 n 68 TYR 111 A LEU 112 n 69 LEU 112 A GLN 113 n 70 GLN 113 A GLY 114 n 71 GLY 114 A LYS 115 n 72 LYS 115 A GLY 116 n 73 GLY 116 A VAL 117 n 74 VAL 117 A SER 118 n 75 SER 118 A ALA 119 n 76 ALA 119 A ASP 120 n 77 ASP 120 A GLN 121 n 78 GLN 121 A ILE 122 n 79 ILE 122 A SER 123 n 80 SER 123 A ILE 124 n 81 ILE 124 A VAL 125 n 82 VAL 125 A SER 126 n 83 SER 126 A TYR 127 n 84 TYR 127 A GLY 128 n 85 GLY 128 A LYS 129 n 86 LYS 129 A GLU 130 n 87 GLU 130 A LYS 131 n 88 LYS 131 A PRO 132 n 89 PRO 132 A ALA 133 n 90 ALA 133 A VAL 134 n 91 VAL 134 A LEU 135 n 92 LEU 135 A GLY 136 n 93 GLY 136 A HIS 137 n 94 HIS 137 A ASP 138 n 95 ASP 138 A GLU 139 n 96 GLU 139 A ALA 140 n 97 ALA 140 A ALA 141 n 98 ALA 141 A TYR 142 n 99 TYR 142 A SER 143 n 100 SER 143 A LYS 144 n 101 LYS 144 A ASN 145 n 102 ASN 145 A ARG 146 n 103 ARG 146 A ARG 147 n 104 ARG 147 A ALA 148 n 105 ALA 148 A VAL 149 n 106 VAL 149 A LEU 150 n 107 LEU 150 A VAL 151 n 108 VAL 151 A TYR 152 n 109 TYR 152 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 50 A N VAL 7 A O ALA 148 A O ALA 105 A N VAL 151 A N VAL 108 A O THR 83 A O THR 40 A N VAL 84 A N VAL 41 A O SER 123 A O SER 80 1 A LEU 44 A LEU 1 1 Y 1 A A NH2 NH2 ARG ARG 60 60 2.00 1_555 5_654 1 A GLN 46 -82.97 -115.50 1 A ASP 55 58.99 14.81 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 30.4 -4.64 0.00 0.00 -4.64 0.00 9.28 0.234 0.010 0.2 0.2 1.93 17.98 543 10342 5.3 99.0 RANDOM 1793074.34 1 RESTRAINED THROUGHOUT 0.0 MAD FLAT MODEL 60.21 0.39 0.28 0.23 5.00 0.25 0.19 1.93 17.98 86 956 10 0 860 0.018 1.7 23.6 1.02 1.46 1.50 2.18 2.00 2.53 2.00 3.72 2.50 0.331 0.038 0.265 2.05 76 1519 6 4.8 94.5 20.2 2.500 34.000 1OAP 9422 0.05500 1 7.7000 4.100 96.3 0.21800 2.50 2.64 3.400 1 4.10 97.5 data reduction MOSFLM data scaling SCALA phasing SOLVE phasing SHARP refinement CNS 1.0 PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN Mad structure of the periplasmique domain of the Escherichia coli PAL protein 1 N N 2 N N 2 N N 3 N N A ARG 60 A ARG 17 HELX_P A ASP 62 A ASP 19 5 1 3 A PHE 63 A PHE 20 HELX_P A SER 76 A SER 33 1 2 14 A THR 93 A THR 50 HELX_P A GLY 114 A GLY 71 1 3 22 A SER 118 A SER 75 HELX_P A ASP 120 A ASP 77 5 4 3 A ASP 138 A ASP 95 HELX_P A ARG 146 A ARG 103 1 5 9 LIPOPROTEIN PERIPLASMIC, PEPTIDOGLYCAN BINDING, TOL SYSTEM, OUTER MEMBRANE, LIPOPROTEIN PAL_ECOLI UNP 1 P07176 65 173 1OAP 44 152 P07176 A 1 1 109 4 anti-parallel anti-parallel parallel A ILE 49 A ILE 6 A TYR 51 A TYR 8 A ARG 147 A ARG 104 A VAL 151 A VAL 108 A VAL 82 A VAL 39 A GLY 86 A GLY 43 A ILE 122 A ILE 79 A SER 126 A SER 83 BINDING SITE FOR RESIDUE SO4 A 410 Software 9 BINDING SITE FOR RESIDUE SO4 A 411 Software 2 A LEU 54 A LEU 11 9 1_555 A ASP 55 A ASP 12 9 1_555 A ALA 88 A ALA 45 9 1_555 A ASP 89 A ASP 46 9 1_555 A TYR 96 A TYR 53 9 1_555 A ASN 97 A ASN 54 9 1_555 A LEU 100 A LEU 57 9 1_555 A ARG 104 A ARG 61 9 1_555 A ARG 146 A ARG 103 9 1_555 A TYR 51 A TYR 8 2 1_555 A SER 143 A SER 100 2 1_555 98 I 41 2 2