0.017142 0.000000 0.002609 0.000000 0.018368 0.000000 0.000000 0.000000 0.020142 0.00000 0.00000 0.00000 Kang, B.S. Cooper, D.R. Devedjiev, Y. Derewenda, U. Derewenda, Z.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 98.65 90.00 58.337 54.441 50.219 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing UK Structure STRUE6 2005 0969-2126 11 845 10.1016/S0969-2126(03)00125-4 12842047 Molecular Roots of Degenerate Specificity in Syntenin'S Pdz2 Domain: Reassessment of the Pdz Recognition Paradigm 2003 10.2210/pdb1oby/pdb pdb_00001oby 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2002-08-31 ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.97946 1.0 X9B NSLS 0.97946 SYNCHROTRON NSLS BEAMLINE X9B 8394.598 SYNTENIN 1 PDZ2, RESIDUES 197-270 2 man polymer 743.761 SYNDECAN-4 LAST 6 RESIDUES, RESIDUES 193-198 2 syn polymer 96.063 SULFATE ION 3 syn non-polymer 18.015 water 145 nat water SYNDECAN BINDING PROTEIN 1, MELANOMA DIFFERENTIATION ASSOCIATED PROTEIN-9, MDA-9, SCAFFOLD PROTEIN PBP1, TACIP18, PRO-TGF-ALPHA CYTOPLASMIC DOMAIN-INTERACTING PROTEIN 18 AMPHIGLYCAN, SYND4, RYUDOCAN CORE PROTEIN no no GAMDPRTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM GAMDPRTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM A,B polypeptide(L) no no TNEFYA TNEFYA P,Q polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 72537 9606 HOMO SAPIENS 511693 ESCHERICHIA COLI BL21 PGST-PARALLEL1 1 2.5 49.7 VAPOR DIFFUSION, SITTING DROP 6.80 SITTING DROP WITH 0.1 M HEPES, PH 6.8, 1.6 M AMMONIUM SULFATE, 20 MM COCL2, AND 0.2 MGSO4 exptl_crystal_grow pdbx_database_proc pdbx_database_status pdbx_database_status reflns chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Experimental preparation Other Data collection Other Data collection Database references Refinement description 1 0 2003-07-11 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-08 1 4 2019-10-16 1 5 2023-12-13 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _pdbx_database_status.status_code_sf _reflns.pdbx_Rmerge_I_obs _database_2.pdbx_DOI _database_2.pdbx_database_accession CRYSTAL STRUCTURE ANALYSIS OF THE SECOND PDZ DOMAIN OF SYNTENIN CRYSTAL STRUCTURE OF THE COMPLEX OF PDZ2 OF SYNTENIN WITH AN INTERLEUKIN 5 RECEPTOR ALPHA PEPTIDE. CRYSTAL STRUCTURE OF THE COMPLEX OF PDZ TANDEM OF SYNTENIN WITH AN INTERLEUKIN 5 RECEPTOR ALPHA PEPTIDE SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMICDOMAIN SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC DOMAIN IN THE PRESENCE OF PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2003-01-31 REL REL SO4 SULFATE ION HOH water 9606 HUMAN HOMO SAPIENS sample MOL_ID 1: FUNCTIONS AS AN ADAPTER PROTEIN. MAY ALSO FUNCTION TO COUPLE SYNDECANS TO CYTOSKELETAL TRANSCRIPTION PROTEINS OR SIGNALING COMPONENTS. ALSO SEEMS TO COUPLE FACTOR SOX4 TO THE IL-5 RECEPTOR (IL5RA) MOL_ID 2: CELL SURFACE PROTEOGLYCAN CONTAINING HEPARAN SULFATE 1N99 PDB ENTRY 1N99 PDB experimental model SO4 1271 3 SO4 SO4 1271 A SO4 1272 3 SO4 SO4 1272 A SO4 1271 3 SO4 SO4 1271 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2015 4 HOH HOH 2015 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B HOH 2025 4 HOH HOH 2025 B HOH 2026 4 HOH HOH 2026 B HOH 2027 4 HOH HOH 2027 B HOH 2028 4 HOH HOH 2028 B HOH 2029 4 HOH HOH 2029 B HOH 2030 4 HOH HOH 2030 B HOH 2031 4 HOH HOH 2031 B HOH 2032 4 HOH HOH 2032 B HOH 2033 4 HOH HOH 2033 B HOH 2034 4 HOH HOH 2034 B HOH 2035 4 HOH HOH 2035 B HOH 2036 4 HOH HOH 2036 B HOH 2037 4 HOH HOH 2037 B HOH 2038 4 HOH HOH 2038 B HOH 2039 4 HOH HOH 2039 B HOH 2040 4 HOH HOH 2040 B HOH 2041 4 HOH HOH 2041 B HOH 2042 4 HOH HOH 2042 B HOH 2043 4 HOH HOH 2043 B HOH 2044 4 HOH HOH 2044 B HOH 2045 4 HOH HOH 2045 B HOH 2046 4 HOH HOH 2046 B HOH 2047 4 HOH HOH 2047 B HOH 2048 4 HOH HOH 2048 B HOH 2049 4 HOH HOH 2049 B HOH 2050 4 HOH HOH 2050 B HOH 2051 4 HOH HOH 2051 B HOH 2052 4 HOH HOH 2052 B HOH 2053 4 HOH HOH 2053 B HOH 2054 4 HOH HOH 2054 B HOH 2055 4 HOH HOH 2055 B HOH 2056 4 HOH HOH 2056 B HOH 2057 4 HOH HOH 2057 B HOH 2058 4 HOH HOH 2058 B HOH 2059 4 HOH HOH 2059 B HOH 2060 4 HOH HOH 2060 B HOH 2061 4 HOH HOH 2061 B HOH 2062 4 HOH HOH 2062 B HOH 2063 4 HOH HOH 2063 B HOH 2064 4 HOH HOH 2064 B HOH 2065 4 HOH HOH 2065 B HOH 2066 4 HOH HOH 2066 B HOH 2067 4 HOH HOH 2067 B HOH 2068 4 HOH HOH 2068 B HOH 2001 4 HOH HOH 2001 P HOH 2002 4 HOH HOH 2002 P HOH 2003 4 HOH HOH 2003 P HOH 2004 4 HOH HOH 2004 P HOH 2005 4 HOH HOH 2005 P HOH 2006 4 HOH HOH 2006 P HOH 2007 4 HOH HOH 2007 P HOH 2008 4 HOH HOH 2008 P HOH 2001 4 HOH HOH 2001 Q HOH 2002 4 HOH HOH 2002 Q HOH 2003 4 HOH HOH 2003 Q HOH 2004 4 HOH HOH 2004 Q HOH 2005 4 HOH HOH 2005 Q HOH 2006 4 HOH HOH 2006 Q HOH 2007 4 HOH HOH 2007 Q HOH 2008 4 HOH HOH 2008 Q HOH 2009 4 HOH HOH 2009 Q n 1 192 A n 2 193 A n 3 194 A n 4 195 A PRO 196 n 5 PRO 196 A ARG 197 n 6 ARG 197 A THR 198 n 7 THR 198 A ILE 199 n 8 ILE 199 A THR 200 n 9 THR 200 A MET 201 n 10 MET 201 A HIS 202 n 11 HIS 202 A LYS 203 n 12 LYS 203 A ASP 204 n 13 ASP 204 A SER 205 n 14 SER 205 A THR 206 n 15 THR 206 A GLY 207 n 16 GLY 207 A HIS 208 n 17 HIS 208 A VAL 209 n 18 VAL 209 A GLY 210 n 19 GLY 210 A PHE 211 n 20 PHE 211 A ILE 212 n 21 ILE 212 A PHE 213 n 22 PHE 213 A LYS 214 n 23 LYS 214 A ASN 215 n 24 ASN 215 A GLY 216 n 25 GLY 216 A LYS 217 n 26 LYS 217 A ILE 218 n 27 ILE 218 A THR 219 n 28 THR 219 A SER 220 n 29 SER 220 A ILE 221 n 30 ILE 221 A VAL 222 n 31 VAL 222 A LYS 223 n 32 LYS 223 A ASP 224 n 33 ASP 224 A SER 225 n 34 SER 225 A SER 226 n 35 SER 226 A ALA 227 n 36 ALA 227 A ALA 228 n 37 ALA 228 A ARG 229 n 38 ARG 229 A ASN 230 n 39 ASN 230 A GLY 231 n 40 GLY 231 A LEU 232 n 41 LEU 232 A LEU 233 n 42 LEU 233 A THR 234 n 43 THR 234 A GLU 235 n 44 GLU 235 A HIS 236 n 45 HIS 236 A ASN 237 n 46 ASN 237 A ILE 238 n 47 ILE 238 A CYS 239 n 48 CYS 239 A GLU 240 n 49 GLU 240 A ILE 241 n 50 ILE 241 A ASN 242 n 51 ASN 242 A GLY 243 n 52 GLY 243 A GLN 244 n 53 GLN 244 A ASN 245 n 54 ASN 245 A VAL 246 n 55 VAL 246 A ILE 247 n 56 ILE 247 A GLY 248 n 57 GLY 248 A LEU 249 n 58 LEU 249 A LYS 250 n 59 LYS 250 A ASP 251 n 60 ASP 251 A SER 252 n 61 SER 252 A GLN 253 n 62 GLN 253 A ILE 254 n 63 ILE 254 A ALA 255 n 64 ALA 255 A ASP 256 n 65 ASP 256 A ILE 257 n 66 ILE 257 A LEU 258 n 67 LEU 258 A SER 259 n 68 SER 259 A THR 260 n 69 THR 260 A SER 261 n 70 SER 261 A GLY 262 n 71 GLY 262 A THR 263 n 72 THR 263 A VAL 264 n 73 VAL 264 A VAL 265 n 74 VAL 265 A THR 266 n 75 THR 266 A ILE 267 n 76 ILE 267 A THR 268 n 77 THR 268 A ILE 269 n 78 ILE 269 A MET 270 n 79 MET 270 A n 1 192 B n 2 193 B n 3 194 B n 4 195 B n 5 196 B ARG 197 n 6 ARG 197 B THR 198 n 7 THR 198 B ILE 199 n 8 ILE 199 B THR 200 n 9 THR 200 B MET 201 n 10 MET 201 B HIS 202 n 11 HIS 202 B LYS 203 n 12 LYS 203 B ASP 204 n 13 ASP 204 B SER 205 n 14 SER 205 B THR 206 n 15 THR 206 B GLY 207 n 16 GLY 207 B HIS 208 n 17 HIS 208 B VAL 209 n 18 VAL 209 B GLY 210 n 19 GLY 210 B PHE 211 n 20 PHE 211 B ILE 212 n 21 ILE 212 B PHE 213 n 22 PHE 213 B LYS 214 n 23 LYS 214 B ASN 215 n 24 ASN 215 B GLY 216 n 25 GLY 216 B LYS 217 n 26 LYS 217 B ILE 218 n 27 ILE 218 B THR 219 n 28 THR 219 B SER 220 n 29 SER 220 B ILE 221 n 30 ILE 221 B VAL 222 n 31 VAL 222 B LYS 223 n 32 LYS 223 B ASP 224 n 33 ASP 224 B SER 225 n 34 SER 225 B SER 226 n 35 SER 226 B ALA 227 n 36 ALA 227 B ALA 228 n 37 ALA 228 B ARG 229 n 38 ARG 229 B ASN 230 n 39 ASN 230 B GLY 231 n 40 GLY 231 B LEU 232 n 41 LEU 232 B LEU 233 n 42 LEU 233 B THR 234 n 43 THR 234 B GLU 235 n 44 GLU 235 B HIS 236 n 45 HIS 236 B ASN 237 n 46 ASN 237 B ILE 238 n 47 ILE 238 B CYS 239 n 48 CYS 239 B GLU 240 n 49 GLU 240 B ILE 241 n 50 ILE 241 B ASN 242 n 51 ASN 242 B GLY 243 n 52 GLY 243 B GLN 244 n 53 GLN 244 B ASN 245 n 54 ASN 245 B VAL 246 n 55 VAL 246 B ILE 247 n 56 ILE 247 B GLY 248 n 57 GLY 248 B LEU 249 n 58 LEU 249 B LYS 250 n 59 LYS 250 B ASP 251 n 60 ASP 251 B SER 252 n 61 SER 252 B GLN 253 n 62 GLN 253 B ILE 254 n 63 ILE 254 B ALA 255 n 64 ALA 255 B ASP 256 n 65 ASP 256 B ILE 257 n 66 ILE 257 B LEU 258 n 67 LEU 258 B SER 259 n 68 SER 259 B THR 260 n 69 THR 260 B SER 261 n 70 SER 261 B GLY 262 n 71 GLY 262 B THR 263 n 72 THR 263 B VAL 264 n 73 VAL 264 B VAL 265 n 74 VAL 265 B THR 266 n 75 THR 266 B ILE 267 n 76 ILE 267 B THR 268 n 77 THR 268 B ILE 269 n 78 ILE 269 B MET 270 n 79 MET 270 B n 1 1 P ASN 2 n 2 ASN 2 P GLU 3 n 3 GLU 3 P PHE 4 n 4 PHE 4 P TYR 5 n 5 TYR 5 P ALA 6 n 6 ALA 6 P THR 1 n 1 THR 1 Q ASN 2 n 2 ASN 2 Q GLU 3 n 3 GLU 3 Q PHE 4 n 4 PHE 4 Q TYR 5 n 5 TYR 5 Q ALA 6 n 6 ALA 6 Q 1.3204 0.5960 -1.7543 2.7056 -0.6148 4.8398 -0.0471 -0.0468 -0.0891 -0.1466 -0.0233 -0.0417 -0.1767 0.1682 0.0705 0.0839 0.0029 -0.0046 0.1013 0.0043 0.0164 refined 8.5350 0.0330 11.4090 X-RAY DIFFRACTION 1.1031 -0.6378 1.2035 1.8190 -0.6651 4.9443 -0.0677 -0.0325 0.0211 0.0309 -0.1043 -0.0475 0.2779 0.0963 0.1720 0.1082 -0.0029 0.0412 0.1033 0.0074 0.0164 refined 8.8390 30.5630 12.2190 X-RAY DIFFRACTION A 197 A 270 X-RAY DIFFRACTION 1 B 197 B 270 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PQS 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 201 A N MET 10 A O VAL 265 A O VAL 74 A N MET 270 A N MET 79 A O ASN 237 A O ASN 46 A N ILE 241 A N ILE 50 A O GLN 244 A O GLN 53 A N THR 219 A N THR 28 A O ILE 212 A O ILE 21 A N PHE 213 A N PHE 22 P O PHE 4 C O PHE 4 B N MET 201 B N MET 10 B O VAL 265 B O VAL 74 B N MET 270 B N MET 79 B O ASN 237 B O ASN 46 B O HIS 236 B O HIS 45 B N ILE 218 B N ILE 27 B N THR 219 B N THR 28 B O ILE 212 B O ILE 21 B N PHE 213 B N PHE 22 Q O PHE 4 D O PHE 4 B N MET 201 B N MET 10 B O VAL 265 B O VAL 74 B N MET 270 B N MET 79 B O ASN 237 B O ASN 46 B N ILE 241 B N ILE 50 B O GLN 244 B O GLN 53 1 A HOH 2034 H HOH 1 A GLY 192 A GLY 1 1 Y 1 A ALA 193 A ALA 2 1 Y 1 A MET 194 A MET 3 1 Y 1 A ASP 195 A ASP 4 1 Y 1 B GLY 192 B GLY 1 1 Y 1 B ALA 193 B ALA 2 1 Y 1 B MET 194 B MET 3 1 Y 1 B ASP 195 B ASP 4 1 Y 1 B PRO 196 B PRO 5 1 Y 1 P THR 1 C THR 1 1 Y 1 B B O O HOH HOH 2025 2060 1.94 1 B B O O HOH HOH 2015 2039 2.07 1 B B O O HOH HOH 2003 2063 2.15 1 A A O O HOH HOH 2003 2055 2.16 1 A A O O HOH HOH 2017 2018 2.18 1 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 229 229 229 N 1 7.72 0.90 118.30 126.02 B B B CB CG OD2 ASP ASP ASP 224 224 224 N 1 A A S O4 SO4 SO4 1271 1271 1.11 1_555 2_555 1 A A O4 O4 SO4 SO4 1271 1271 1.26 1_555 2_555 1 A A O2 O4 SO4 SO4 1271 1271 1.31 1_555 2_555 1 A A O1 O3 SO4 SO4 1271 1271 1.53 1_555 2_555 1 A A S O3 SO4 SO4 1271 1271 1.56 1_555 2_555 1 A A O3 O3 SO4 SO4 1271 1271 1.67 1_555 2_555 1 A A O3 O4 SO4 SO4 1271 1271 2.16 1_555 2_555 16.42 1.05000 0.00000 -0.68000 0.44000 0.00000 -1.70000 0.960 0.936 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.226 0.175 1.85 49.39 985 12001 7.600 97.3 3.645 0.107 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.155 0.147 0.80 0.80 1.40 PDB ENTRY 1N99 MAXIMUM LIKELIHOOD BABINET MODEL PLUS MASK 1.85 49.39 145 1372 15 0 1212 0.012 0.021 1235 0.001 0.020 1118 1.815 1.946 1663 0.941 3.000 2610 5.762 5.000 156 0.113 0.200 205 0.011 0.020 1342 0.015 0.020 222 0.204 0.200 227 0.257 0.200 1273 0.083 0.200 732 0.247 0.200 96 0.668 0.200 28 0.366 0.200 72 0.251 0.200 14 1.120 1.500 787 2.005 2.000 1275 3.160 3.000 448 5.005 4.500 388 0.3360 0.2590 1.90 55 739 20 1.850 50.000 1OBY 46421 0.049000 1 25.8000 3.570 97.4 0.41300 1.85 1.92 2.860 1 83.7 refinement REFMAC 5.1.24 data reduction HKL-2000 data scaling HKL-2000 phasing AMoRE Crystal structure of the complex of PDZ2 of syntenin with a syndecan-4 peptide. 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N A SER 225 A SER 34 HELX_P A GLY 231 A GLY 40 1 1 7 A LYS 250 A LYS 59 HELX_P A SER 261 A SER 70 1 2 12 B SER 225 B SER 34 HELX_P B GLY 231 B GLY 40 1 3 7 B LYS 250 B LYS 59 HELX_P B SER 261 B SER 70 1 4 12 CELL ADHESION CELL ADHESION, ADHESION-COMPLEX, PDZ DOMAIN, SIGNAL TRANSDUCTION, NUCLEAR PROTEIN 1OBY PDB 1 1OBY SDB1_HUMAN UNP 1 O00560 SDC4_HUMAN UNP 2 P31431 192 196 1OBY 192 196 1OBY A 1 1 5 197 270 1OBY 197 270 O00560 A 2 6 79 192 196 1OBY 192 196 1OBY B 1 1 5 197 270 1OBY 197 270 O00560 B 2 6 79 193 198 1OBY 1 6 P31431 P 3 1 6 193 198 1OBY 1 6 P31431 Q 3 1 6 4 3 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 197 A ARG 6 A HIS 202 A HIS 11 A VAL 264 A VAL 73 A MET 270 A MET 79 A ASN 237 A ASN 46 A ILE 241 A ILE 50 A GLN 244 A GLN 53 A ASN 245 A ASN 54 A LYS 217 A LYS 26 A ILE 221 A ILE 30 A PHE 211 A PHE 20 A LYS 214 A LYS 23 P PHE 4 C PHE 4 P ALA 6 C ALA 6 B THR 198 B THR 7 B HIS 202 B HIS 11 B VAL 264 B VAL 73 B MET 270 B MET 79 B HIS 236 B HIS 45 B ILE 241 B ILE 50 B LYS 217 B LYS 26 B ILE 221 B ILE 30 B PHE 211 B PHE 20 B LYS 214 B LYS 23 Q PHE 4 D PHE 4 Q ALA 6 D ALA 6 B THR 198 B THR 7 B HIS 202 B HIS 11 B VAL 264 B VAL 73 B MET 270 B MET 79 B HIS 236 B HIS 45 B ILE 241 B ILE 50 B GLN 244 B GLN 53 B ASN 245 B ASN 54 BINDING SITE FOR RESIDUE SO4 A1271 Software 5 BINDING SITE FOR RESIDUE SO4 A1272 Software 8 BINDING SITE FOR RESIDUE SO4 B1271 Software 6 A PRO 196 A PRO 5 5 1_555 A ARG 197 A ARG 6 5 1_555 A LEU 233 A LEU 42 5 1_555 A HIS 236 A HIS 45 5 1_555 A MET 270 A MET 79 5 1_555 A HIS 202 A HIS 11 8 1_555 A SER 226 A SER 35 8 1_555 A ARG 229 A ARG 38 8 1_555 A ASN 230 A ASN 39 8 1_555 A HOH 2008 H HOH 8 1_555 A HOH 2060 H HOH 8 1_555 B LYS 250 B LYS 59 8 1_555 B GLN 253 B GLN 62 8 1_555 A ASN 242 A ASN 51 6 1_555 A SER 261 A SER 70 6 1_555 A GLY 262 A GLY 71 6 1_555 B ASN 215 B ASN 24 6 1_555 B LYS 217 B LYS 26 6 1_555 B HOH 2022 I HOH 6 1_555 5 C 1 2 1