0.031817
0.005318
0.006654
0.000000
0.018183
0.007556
0.000000
0.000000
0.016863
0.00000
0.00000
0.00000
Zhou, C.Z.
Li de La Sierra-Gallay, I.
Cheruel, S.
Collinet, B.
Minard, P.
Blondeau, K.
Henkes, G.
Aufrere, R.
Leulliot, N.
Graille, M.
Sorel, I.
Savarin, P.
de la Torre, F.
Poupon, A.
Janin, J.
van Tilbeurgh, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
110.75
97.35
99.49
31.430
55.760
64.750
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H11 N O3 S2
197.276
n
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C17 H32 O16 P2
554.374
2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE
D-MYO-PHOSPHATIDYLINOSITOL 3-PHOSPHATED (+)-SN-1,2-DI-O-BUTANOYLGLYCERYL,3-O-PHOSPHO
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
S
N
78
N
S
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
O
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
R
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
S
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
Y
164
N
C
Y
165
N
N
Y
166
N
C
Y
167
N
C
Y
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
S
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
S
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
S
C
N
296
R
C
N
297
R
C
N
298
S
C
N
299
S
C
N
300
R
C
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
O
N
305
N
O
N
306
N
O
N
307
S
P
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
P
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
C
N
316
S
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
R
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
N
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
Y
161
N
sing
Y
162
N
doub
Y
163
N
doub
N
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
US
J. Biol. Chem.
JBCHA3
0071
0021-9258
278
50371
50376
10.1074/jbc.M304392200
14514667
Crystal structure of the yeast Phox homology (PX) domain protein Grd19p complexed to phosphatidylinositol-3-phosphate.
2003
10.2210/pdb1ocu/pdb
pdb_00001ocu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
2002-07-15
SINGLE WAVELENGTH
M
x-ray
1
0.984
1.0
BM30A
ESRF
0.984
SYNCHROTRON
ESRF BEAMLINE BM30A
CHEMICALLY MODIFIED CYSTEINE. D-MYO-PHOSPHATIDYLINOSITOL 3-PHOSPHATE
18876.814
SORTING NEXIN
PX-DOMAIN
2
man
polymer
554.374
2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE
2
syn
non-polymer
18.015
water
78
nat
water
no
yes
MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRR
RYSDFEFFRK(CME)LIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIE
AEKFVG
MPREFKSFGSTEKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRR
RYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKF
VG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BAKER'S YEAST
sample
CLONED GENE
559292
Saccharomyces cerevisiae S288C
469008
ESCHERICHIA COLI
BL21(DE3)
PET
1
2.72
54
6.80
10% PEG8000, 8% ETHYLENE GLYCOL, 0.1M NA-HEPES PH 7,5
audit_author
citation
citation_author
entity_src_gen
struct
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Database references
Source and taxonomy
Structure summary
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2003-12-12
1
1
2011-05-08
1
2
2011-07-13
1
3
2018-02-14
1
4
2023-12-13
_audit_author.name
_citation.journal_abbrev
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_citation_author.name
_entity_src_gen.gene_src_strain
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_scientific_name
_struct.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
CRYSTAL STRUCTURE OF THE YEAST PX-DOAMIN PROTEIN GRD19P (SORTING NEXIN3) COMPLEXED TO PHOSPHATIDYLINOSYTOL-3-PHOSPHATE.
PDBE
Y
PDBE
2003-02-10
REL
REL
PIB
2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE
HOH
water
1OCS
PDB ENTRY 1OCS
PDB
experimental model
PIB
1163
2
PIB
PIB
1163
A
PIB
1164
2
PIB
PIB
1164
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
ILE
28
n
28
ILE
28
A
TYR
29
n
29
TYR
29
A
ALA
30
n
30
ALA
30
A
GLU
31
n
31
GLU
31
A
PRO
32
n
32
PRO
32
A
GLU
33
n
33
GLU
33
A
ASN
34
n
34
ASN
34
A
PHE
35
n
35
PHE
35
A
LEU
36
n
36
LEU
36
A
GLU
37
n
37
GLU
37
A
ILE
38
n
38
ILE
38
A
GLU
39
n
39
GLU
39
A
VAL
40
n
40
VAL
40
A
HIS
41
n
41
HIS
41
A
ASN
42
n
42
ASN
42
A
PRO
43
n
43
PRO
43
A
LYS
44
n
44
LYS
44
A
THR
45
n
45
THR
45
A
HIS
46
n
46
HIS
46
A
ILE
47
n
47
ILE
47
A
PRO
48
n
48
PRO
48
A
ASN
49
n
49
ASN
49
A
GLY
50
n
50
GLY
50
A
MET
51
n
51
MET
51
A
ASP
52
n
52
ASP
52
A
SER
53
n
53
SER
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
MET
56
n
56
MET
56
A
PHE
57
n
57
PHE
57
A
THR
58
n
58
THR
58
A
ASP
59
n
59
ASP
59
A
TYR
60
n
60
TYR
60
A
GLU
61
n
61
GLU
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
CYS
64
n
64
CYS
64
A
ARG
65
n
65
ARG
65
A
THR
66
n
66
THR
66
A
ASN
67
n
67
ASN
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
SER
70
n
70
SER
70
A
PHE
71
n
71
PHE
71
A
HIS
72
n
72
HIS
72
A
LYS
73
n
73
LYS
73
A
ARG
74
n
74
ARG
74
A
VAL
75
n
75
VAL
75
A
SER
76
n
76
SER
76
A
LYS
77
n
77
LYS
77
A
VAL
78
n
78
VAL
78
A
ARG
79
n
79
ARG
79
A
ARG
80
n
80
ARG
80
A
ARG
81
n
81
ARG
81
A
TYR
82
n
82
TYR
82
A
SER
83
n
83
SER
83
A
ASP
84
n
84
ASP
84
A
PHE
85
n
85
PHE
85
A
GLU
86
n
86
GLU
86
A
PHE
87
n
87
PHE
87
A
PHE
88
n
88
PHE
88
A
ARG
89
n
89
ARG
89
A
LYS
90
n
90
LYS
90
A
CME
91
n
91
CME
91
A
LEU
92
n
92
LEU
92
A
ILE
93
n
93
ILE
93
A
LYS
94
n
94
LYS
94
A
GLU
95
n
95
GLU
95
A
ILE
96
n
96
ILE
96
A
SER
97
n
97
SER
97
A
MET
98
n
98
MET
98
A
LEU
99
n
99
LEU
99
A
ASN
100
n
100
ASN
100
A
HIS
101
n
101
HIS
101
A
PRO
102
n
102
PRO
102
A
LYS
103
n
103
LYS
103
A
VAL
104
n
104
VAL
104
A
MET
105
n
105
MET
105
A
VAL
106
n
106
VAL
106
A
PRO
107
n
107
PRO
107
A
HIS
108
n
108
HIS
108
A
LEU
109
n
109
LEU
109
A
PRO
110
n
110
PRO
110
A
GLY
111
n
111
GLY
111
A
LYS
112
n
112
LYS
112
A
ILE
113
n
113
ILE
113
A
LEU
114
n
114
LEU
114
A
LEU
115
n
115
LEU
115
A
SER
116
n
116
SER
116
A
ASN
117
n
117
ASN
117
A
ARG
118
n
118
ARG
118
A
PHE
119
n
119
PHE
119
A
SER
120
n
120
SER
120
A
ASN
121
n
121
ASN
121
A
GLU
122
n
122
GLU
122
A
VAL
123
n
123
VAL
123
A
ILE
124
n
124
ILE
124
A
GLU
125
n
125
GLU
125
A
GLU
126
n
126
GLU
126
A
ARG
127
n
127
ARG
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
GLY
130
n
130
GLY
130
A
LEU
131
n
131
LEU
131
A
ASN
132
n
132
ASN
132
A
THR
133
n
133
THR
133
A
TRP
134
n
134
TRP
134
A
MET
135
n
135
MET
135
A
GLN
136
n
136
GLN
136
A
SER
137
n
137
SER
137
A
VAL
138
n
138
VAL
138
A
ALA
139
n
139
ALA
139
A
GLY
140
n
140
GLY
140
A
HIS
141
n
141
HIS
141
A
PRO
142
n
142
PRO
142
A
LEU
143
n
143
LEU
143
A
LEU
144
n
144
LEU
144
A
GLN
145
n
145
GLN
145
A
SER
146
n
146
SER
146
A
GLY
147
n
147
GLY
147
A
SER
148
n
148
SER
148
A
LYS
149
n
149
LYS
149
A
VAL
150
n
150
VAL
150
A
LEU
151
n
151
LEU
151
A
VAL
152
n
152
VAL
152
A
ARG
153
n
153
ARG
153
A
PHE
154
n
154
PHE
154
A
ILE
155
n
155
ILE
155
A
GLU
156
n
156
GLU
156
A
ALA
157
n
157
ALA
157
A
GLU
158
n
158
GLU
158
A
LYS
159
n
159
LYS
159
A
PHE
160
n
160
PHE
160
A
VAL
161
n
161
VAL
161
A
n
162
162
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
n
17
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
n
22
22
B
n
23
23
B
n
24
24
B
n
25
25
B
n
26
26
B
n
27
27
B
n
28
28
B
n
29
29
B
n
30
30
B
GLU
31
n
31
GLU
31
B
PRO
32
n
32
PRO
32
B
GLU
33
n
33
GLU
33
B
ASN
34
n
34
ASN
34
B
PHE
35
n
35
PHE
35
B
LEU
36
n
36
LEU
36
B
GLU
37
n
37
GLU
37
B
ILE
38
n
38
ILE
38
B
GLU
39
n
39
GLU
39
B
VAL
40
n
40
VAL
40
B
HIS
41
n
41
HIS
41
B
ASN
42
n
42
ASN
42
B
PRO
43
n
43
PRO
43
B
LYS
44
n
44
LYS
44
B
THR
45
n
45
THR
45
B
HIS
46
n
46
HIS
46
B
ILE
47
n
47
ILE
47
B
PRO
48
n
48
PRO
48
B
ASN
49
n
49
ASN
49
B
GLY
50
n
50
GLY
50
B
MET
51
n
51
MET
51
B
ASP
52
n
52
ASP
52
B
SER
53
n
53
SER
53
B
LYS
54
n
54
LYS
54
B
GLY
55
n
55
GLY
55
B
MET
56
n
56
MET
56
B
PHE
57
n
57
PHE
57
B
THR
58
n
58
THR
58
B
ASP
59
n
59
ASP
59
B
TYR
60
n
60
TYR
60
B
GLU
61
n
61
GLU
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
CYS
64
n
64
CYS
64
B
ARG
65
n
65
ARG
65
B
THR
66
n
66
THR
66
B
ASN
67
n
67
ASN
67
B
LEU
68
n
68
LEU
68
B
PRO
69
n
69
PRO
69
B
SER
70
n
70
SER
70
B
PHE
71
n
71
PHE
71
B
HIS
72
n
72
HIS
72
B
LYS
73
n
73
LYS
73
B
ARG
74
n
74
ARG
74
B
VAL
75
n
75
VAL
75
B
SER
76
n
76
SER
76
B
LYS
77
n
77
LYS
77
B
VAL
78
n
78
VAL
78
B
ARG
79
n
79
ARG
79
B
ARG
80
n
80
ARG
80
B
ARG
81
n
81
ARG
81
B
TYR
82
n
82
TYR
82
B
SER
83
n
83
SER
83
B
ASP
84
n
84
ASP
84
B
PHE
85
n
85
PHE
85
B
GLU
86
n
86
GLU
86
B
PHE
87
n
87
PHE
87
B
PHE
88
n
88
PHE
88
B
ARG
89
n
89
ARG
89
B
LYS
90
n
90
LYS
90
B
CME
91
n
91
CME
91
B
LEU
92
n
92
LEU
92
B
ILE
93
n
93
ILE
93
B
LYS
94
n
94
LYS
94
B
GLU
95
n
95
GLU
95
B
ILE
96
n
96
ILE
96
B
SER
97
n
97
SER
97
B
MET
98
n
98
MET
98
B
LEU
99
n
99
LEU
99
B
ASN
100
n
100
ASN
100
B
HIS
101
n
101
HIS
101
B
PRO
102
n
102
PRO
102
B
LYS
103
n
103
LYS
103
B
VAL
104
n
104
VAL
104
B
MET
105
n
105
MET
105
B
VAL
106
n
106
VAL
106
B
PRO
107
n
107
PRO
107
B
HIS
108
n
108
HIS
108
B
LEU
109
n
109
LEU
109
B
PRO
110
n
110
PRO
110
B
GLY
111
n
111
GLY
111
B
LYS
112
n
112
LYS
112
B
ILE
113
n
113
ILE
113
B
LEU
114
n
114
LEU
114
B
LEU
115
n
115
LEU
115
B
SER
116
n
116
SER
116
B
ASN
117
n
117
ASN
117
B
ARG
118
n
118
ARG
118
B
PHE
119
n
119
PHE
119
B
SER
120
n
120
SER
120
B
ASN
121
n
121
ASN
121
B
GLU
122
n
122
GLU
122
B
VAL
123
n
123
VAL
123
B
ILE
124
n
124
ILE
124
B
GLU
125
n
125
GLU
125
B
GLU
126
n
126
GLU
126
B
ARG
127
n
127
ARG
127
B
ARG
128
n
128
ARG
128
B
GLN
129
n
129
GLN
129
B
GLY
130
n
130
GLY
130
B
LEU
131
n
131
LEU
131
B
ASN
132
n
132
ASN
132
B
THR
133
n
133
THR
133
B
TRP
134
n
134
TRP
134
B
MET
135
n
135
MET
135
B
GLN
136
n
136
GLN
136
B
SER
137
n
137
SER
137
B
VAL
138
n
138
VAL
138
B
ALA
139
n
139
ALA
139
B
GLY
140
n
140
GLY
140
B
HIS
141
n
141
HIS
141
B
PRO
142
n
142
PRO
142
B
LEU
143
n
143
LEU
143
B
LEU
144
n
144
LEU
144
B
GLN
145
n
145
GLN
145
B
SER
146
n
146
SER
146
B
GLY
147
n
147
GLY
147
B
SER
148
n
148
SER
148
B
LYS
149
n
149
LYS
149
B
VAL
150
n
150
VAL
150
B
LEU
151
n
151
LEU
151
B
VAL
152
n
152
VAL
152
B
ARG
153
n
153
ARG
153
B
PHE
154
n
154
PHE
154
B
ILE
155
n
155
ILE
155
B
GLU
156
n
156
GLU
156
B
ALA
157
n
157
ALA
157
B
GLU
158
n
158
GLU
158
B
LYS
159
n
159
LYS
159
B
PHE
160
n
160
PHE
160
B
VAL
161
n
161
VAL
161
B
GLY
162
n
162
GLY
162
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
A
CME
91
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
A
CME
91
CYS
B
CME
91
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
B
CME
91
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
46
A
N
HIS
46
A
O
PHE
57
A
O
PHE
57
A
N
CYS
64
A
N
CYS
64
A
O
SER
76
A
O
SER
76
B
N
HIS
46
B
N
HIS
46
B
O
PHE
57
B
O
PHE
57
B
N
CYS
64
B
N
CYS
64
B
O
SER
76
B
O
SER
76
1
A
C9
PIB
1163
C
C9
PIB
1
1
N
1
A
C10
PIB
1163
C
C10
PIB
1
1
N
1
A
C11
PIB
1163
C
C11
PIB
1
1
N
1
A
C12
PIB
1163
C
C12
PIB
1
1
N
1
A
C13
PIB
1163
C
C13
PIB
1
1
N
1
A
C14
PIB
1163
C
C14
PIB
1
1
N
1
A
C15
PIB
1163
C
C15
PIB
1
1
N
1
A
C16
PIB
1163
C
C16
PIB
1
1
N
1
A
C17
PIB
1163
C
C17
PIB
1
1
N
1
A
O14
PIB
1163
C
O14
PIB
1
1
N
1
A
O15
PIB
1163
C
O15
PIB
1
1
N
1
A
O16
PIB
1163
C
O16
PIB
1
1
N
1
A
O17
PIB
1163
C
O17
PIB
1
1
N
1
B
C9
PIB
1164
D
C9
PIB
1
1
N
1
B
C10
PIB
1164
D
C10
PIB
1
1
N
1
B
C11
PIB
1164
D
C11
PIB
1
1
N
1
B
C12
PIB
1164
D
C12
PIB
1
1
N
1
B
C13
PIB
1164
D
C13
PIB
1
1
N
1
B
C14
PIB
1164
D
C14
PIB
1
1
N
1
B
C15
PIB
1164
D
C15
PIB
1
1
N
1
B
C16
PIB
1164
D
C16
PIB
1
1
N
1
B
C17
PIB
1164
D
C17
PIB
1
1
N
1
B
O14
PIB
1164
D
O14
PIB
1
1
N
1
B
O15
PIB
1164
D
O15
PIB
1
1
N
1
B
O16
PIB
1164
D
O16
PIB
1
1
N
1
B
O17
PIB
1164
D
O17
PIB
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ARG
3
A
ARG
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
PHE
5
A
PHE
5
1
Y
1
A
LYS
6
A
LYS
6
1
Y
1
A
SER
7
A
SER
7
1
Y
1
A
PHE
8
A
PHE
8
1
Y
1
A
GLY
9
A
GLY
9
1
Y
1
A
SER
10
A
SER
10
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
GLU
12
A
GLU
12
1
Y
1
A
LYS
13
A
LYS
13
1
Y
1
A
SER
14
A
SER
14
1
Y
1
A
LEU
15
A
LEU
15
1
Y
1
A
LEU
16
A
LEU
16
1
Y
1
A
SER
17
A
SER
17
1
Y
1
A
LYS
18
A
LYS
18
1
Y
1
A
GLY
19
A
GLY
19
1
Y
1
A
HIS
20
A
HIS
20
1
Y
1
A
GLY
21
A
GLY
21
1
Y
1
A
GLU
22
A
GLU
22
1
Y
1
A
PRO
23
A
PRO
23
1
Y
1
A
SER
24
A
SER
24
1
Y
1
A
TYR
25
A
TYR
25
1
Y
1
A
SER
26
A
SER
26
1
Y
1
A
GLU
27
A
GLU
27
1
Y
1
A
GLY
162
A
GLY
162
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
ARG
3
B
ARG
3
1
Y
1
B
GLU
4
B
GLU
4
1
Y
1
B
PHE
5
B
PHE
5
1
Y
1
B
LYS
6
B
LYS
6
1
Y
1
B
SER
7
B
SER
7
1
Y
1
B
PHE
8
B
PHE
8
1
Y
1
B
GLY
9
B
GLY
9
1
Y
1
B
SER
10
B
SER
10
1
Y
1
B
THR
11
B
THR
11
1
Y
1
B
GLU
12
B
GLU
12
1
Y
1
B
LYS
13
B
LYS
13
1
Y
1
B
SER
14
B
SER
14
1
Y
1
B
LEU
15
B
LEU
15
1
Y
1
B
LEU
16
B
LEU
16
1
Y
1
B
SER
17
B
SER
17
1
Y
1
B
LYS
18
B
LYS
18
1
Y
1
B
GLY
19
B
GLY
19
1
Y
1
B
HIS
20
B
HIS
20
1
Y
1
B
GLY
21
B
GLY
21
1
Y
1
B
GLU
22
B
GLU
22
1
Y
1
B
PRO
23
B
PRO
23
1
Y
1
B
SER
24
B
SER
24
1
Y
1
B
TYR
25
B
TYR
25
1
Y
1
B
SER
26
B
SER
26
1
Y
1
B
GLU
27
B
GLU
27
1
Y
1
B
ILE
28
B
ILE
28
1
Y
1
B
TYR
29
B
TYR
29
1
Y
1
B
ALA
30
B
ALA
30
1
Y
1
A
SER
53
-64.90
0.80
1
A
PRO
102
-54.77
2.11
1
A
SER
116
-50.03
-89.39
1
B
LEU
36
-162.11
117.02
1
B
ASN
100
59.50
70.69
1
B
HIS
101
-159.60
59.89
1
B
PRO
102
-61.58
0.71
1
B
SER
116
-64.36
29.85
1
B
ASN
117
-147.44
-20.27
1
B
VAL
161
-79.28
37.04
PROTEIN_REP.PARAM
PROTEIN.TOP
PIB.PARMA
PIB.TOP
CME.PARAM
CME.TOP
WATER_REP.PARAM
WATER.TOP
41.2
-15.893
-1.446
7.882
9.085
-0.079
6.808
RESIDUES 1 A TO 27 A AND 162 A, 1B TO 30 B ARE ABSENT FROM THE FINAL MODEL BECAUSE DISORDERED.
0.256
0.221
0.221
2.3
20
1699
17072
9.6
96.8
RANDOM
1000
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1OCS
0.29
20
0.35
2.3
20
78
2319
44
0
2197
0.007
1.3
22
0.8
0.2562
0.2758
2.32
44
392
33
33.7
2.280
25.000
1OCU
17289
0.000
0.04700
1
25.1000
3.800
96.0
0.15600
2.28
2.33
3.200
1
77.3
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal structure of the yeast PX-domain protein Grd19p (sorting nexin 3) complexed to phosphatidylinosytol-3-phosphate.
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
TYR
82
A
TYR
82
HELX_P
A
LYS
90
A
LYS
90
1
1
9
A
LEU
92
A
LEU
92
HELX_P
A
LEU
99
A
LEU
99
1
2
8
A
SER
116
A
SER
116
HELX_P
A
PHE
119
A
PHE
119
5
3
4
A
SER
120
A
SER
120
HELX_P
A
GLY
140
A
GLY
140
1
4
21
A
HIS
141
A
HIS
141
HELX_P
A
SER
148
A
SER
148
1
5
8
A
SER
148
A
SER
148
HELX_P
A
ALA
157
A
ALA
157
1
6
10
B
ARG
81
B
ARG
81
HELX_P
B
LYS
90
B
LYS
90
1
7
10
B
LEU
92
B
LEU
92
HELX_P
B
MET
98
B
MET
98
1
8
7
B
LEU
114
B
LEU
114
HELX_P
B
ARG
118
B
ARG
118
5
9
5
B
SER
120
B
SER
120
HELX_P
B
ALA
139
B
ALA
139
1
10
20
B
HIS
141
B
HIS
141
HELX_P
B
SER
148
B
SER
148
1
11
8
B
SER
148
B
SER
148
HELX_P
B
ALA
157
B
ALA
157
1
12
10
covale
1.331
both
A
LYS
90
A
C
LYS
90
1_555
A
CME
91
A
N
CME
91
1_555
covale
1.328
both
A
CME
91
A
C
CME
91
1_555
A
LEU
92
A
N
LEU
92
1_555
covale
1.330
both
B
LYS
90
B
C
LYS
90
1_555
B
CME
91
B
N
CME
91
1_555
covale
1.330
both
B
CME
91
B
C
CME
91
1_555
B
LEU
92
B
N
LEU
92
1_555
SORTING PROTEIN
SORTING PROTEIN, YEAST PROTEIN, SORTING NEXIN, COMPLEX WITH PHOSPHATIDYLINOSITOL PHOSPHATE
SNX3_YEAST
UNP
1
Q08826
1
162
1OCU
1
162
Q08826
A
1
1
162
1
162
1OCU
1
162
Q08826
B
1
1
162
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
36
A
LEU
36
A
HIS
46
A
HIS
46
A
PHE
57
A
PHE
57
A
THR
66
A
THR
66
A
VAL
75
A
VAL
75
A
ARG
81
A
ARG
81
B
LEU
36
B
LEU
36
B
HIS
46
B
HIS
46
B
PHE
57
B
PHE
57
B
THR
66
B
THR
66
B
VAL
75
B
VAL
75
B
ARG
80
B
ARG
80
BINDING SITE FOR RESIDUE PIB A1163
Software
11
BINDING SITE FOR RESIDUE PIB B1164
Software
10
A
ARG
81
A
ARG
81
11
1_555
A
TYR
82
A
TYR
82
11
1_555
A
SER
83
A
SER
83
11
1_555
A
GLU
86
A
GLU
86
11
1_555
A
LYS
112
A
LYS
112
11
1_555
A
ILE
113
A
ILE
113
11
1_555
A
ARG
118
A
ARG
118
11
1_555
A
ARG
127
A
ARG
127
11
1_555
A
HOH
2012
E
HOH
11
1_555
A
HOH
2014
E
HOH
11
1_555
A
HOH
2047
E
HOH
11
1_555
B
ARG
81
B
ARG
81
10
1_555
B
TYR
82
B
TYR
82
10
1_555
B
SER
83
B
SER
83
10
1_555
B
GLU
86
B
GLU
86
10
1_555
B
LYS
112
B
LYS
112
10
1_555
B
ILE
113
B
ILE
113
10
1_555
B
ARG
118
B
ARG
118
10
1_555
B
ARG
127
B
ARG
127
10
1_555
B
HOH
2030
F
HOH
10
1_555
B
HOH
2031
F
HOH
10
1_555
1
P 1