0.014736 0.000000 0.000000 0.000000 0.014736 0.000000 0.000000 0.000000 0.014441 0.00000 0.00000 0.00000 Zaccai, N.R. Maenaka, K. Maenaka, T. Crocker, P.R. Brossmer, R. Kelm, S. Jones, E.Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 67.860 67.860 69.247 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C19 H26 N2 O9 426.418 methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid ME-A-N-BENZOYL-AMINO-9-DEOXY-NEU5AC; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-galacto-non-2-ulosidonic acid D-saccharide C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N O N 78 R C N 79 N O N 80 N C N 81 S C N 82 N O N 83 R C N 84 N N N 85 N C N 86 N O N 87 N C N 88 R C N 89 N O N 90 R C N 91 N O N 92 R C N 93 N O N 94 N C N 95 N N N 96 N C N 97 N O Y 98 N C Y 99 N C Y 100 N C Y 101 N C Y 102 N C Y 103 N C N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 R C N 132 N C N 133 N O N 134 N C N 135 N S N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N O N 152 N N N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N O N 168 N C N 169 N C N 170 N C N 171 N O N 172 N O N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 N C N 185 N C N 186 N O N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C Y 198 N C Y 199 N N Y 200 N C Y 201 N C Y 202 N N N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N O N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 S C N 222 N C N 223 N C N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N N N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N C N 292 N S N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N O N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N S N 361 N O N 362 N O N 363 N O N 364 N O N 365 N N N 366 S C N 367 N C N 368 N O N 369 R C N 370 N O N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N N Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing Y 116 N doub Y 117 N sing Y 118 N sing N 119 N sing Y 120 N doub N 121 N sing Y 122 N doub N 123 N sing Y 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing Y 197 N sing Y 198 N doub Y 199 N doub N 200 N sing Y 201 N sing N 202 N sing Y 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N doub Y 306 N sing Y 307 N sing N 308 N sing Y 309 N doub N 310 N sing Y 311 N doub N 312 N sing Y 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N doub Y 383 N sing Y 384 N sing N 385 N sing Y 386 N sing Y 387 N doub N 388 N sing Y 389 N doub N 390 N sing Y 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing Y 406 N doub Y 407 N sing Y 408 N sing N 409 N sing Y 410 N doub N 411 N sing Y 412 N doub N 413 N sing Y 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing UK Structure STRUE6 2005 0969-2126 11 557 10.1016/S0969-2126(03)00073-X 12737821 Structure-Guided Design of Sialic Acid-Based Siglec Inhibitors and Crystallographic Analysis in Complex with Sialoadhesin 2003 10.2210/pdb1od9/pdb pdb_00001od9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110.0 1 CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.87 1.0 PX9.6 SRS 0.87 SYNCHROTRON SRS BEAMLINE PX9.6 BOUND TO ME-A-N-BENZOYL-AMINO-9-DEOXY-NEU5AC, COORDINATE SYSTEM ORIGX ORIGX MATRIX (M) ORIGX VECTOR (V) 13319.107 SIALOADHESIN DOMAIN ONE, IG-LIKE V-TYPE DOMAIN, RESIDUES 20-138 1 man polymer 426.418 methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 71 nat water SND1, SIALIC ACID BINDING IG-LIKE LECTIN-1, SIGLEC-1 no no TWGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCN LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTTD TWGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCN LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTTD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n MOUSE sample CHO CELL STABLE EXPRESSION WITH PEE14 PLASMID 10090 MUS MUSCULUS CHO CELL 10029 CRICETULUS GRISEUS PEE14 1 2.54 52.0 4.60 1+1 DROP WITH 22.5 % (W/V) PEG 4000, 10 MM DTT, 0.18M AMMONIUM SULFATE, 0.09M SODIUM ACETATE PH 4.6,25MM BENZ COMPOUND atom_site chem_comp entity pdbx_entity_nonpoly struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2003-05-16 1 1 2011-05-08 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-12-13 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession N-TERMINAL OF SIALOADHESIN IN COMPLEX WITH ME-A-9-N-(NAPHTHYL-2-CARBONYL)-AMINO-9- DEOXY-NEU5AC (NAP COMPOUND) N-TERMINAL OF SIALOADHESIN IN COMPLEX WITH ME-A-9-N-((BIPHENYL-4-CARBONYL)-AMINO-9- DEOXY-NEU5AC (BIP COMPOUND) N-TERMINAL DOMAIN OF SIALOADHESIN (MOUSE) IN COMPLEX WITH 3'SIALYLLACTOSE N-TERMINAL DOMAIN OF SIALOADHESIN (MOUSE) SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2003-02-14 REL BND methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid SO4 SULFATE ION HOH water THIS IS A MACROPHAGE-RESTRICTED ADHESION MOLECULE THAT MEDIATES SIALIC-ACID DEPENDENT BINDING TO LYMPHOCYTES, OTHER EFFECTORS INCLUDE GRANULOCYTES, MONOCYTES, NATURAL KILLER CELLS AND B-CELLS MEMBER OF THE IMMUNOGLOBULINS SUPERFAMILY CONTAINING IG- AND V-TYPE DOMAINS. 1QFO DOMAIN A OF PDB ENTRY 1QFO PDB experimental model BND 201 2 BND BND 201 A SO4 202 3 SO4 SO4 202 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A THR 1 n 1 THR 1 A TRP 2 n 2 TRP 2 A GLY 3 n 3 GLY 3 A VAL 4 n 4 VAL 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A PRO 7 n 7 PRO 7 A LYS 8 n 8 LYS 8 A ASN 9 n 9 ASN 9 A VAL 10 n 10 VAL 10 A GLN 11 n 11 GLN 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A SER 14 n 14 SER 14 A GLY 15 n 15 GLY 15 A SER 16 n 16 SER 16 A CYS 17 n 17 CYS 17 A LEU 18 n 18 LEU 18 A LEU 19 n 19 LEU 19 A ILE 20 n 20 ILE 20 A PRO 21 n 21 PRO 21 A CYS 22 n 22 CYS 22 A ILE 23 n 23 ILE 23 A PHE 24 n 24 PHE 24 A SER 25 n 25 SER 25 A TYR 26 n 26 TYR 26 A PRO 27 n 27 PRO 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A VAL 30 n 30 VAL 30 A PRO 31 n 31 PRO 31 A VAL 32 n 32 VAL 32 A SER 33 n 33 SER 33 A ASN 34 n 34 ASN 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A THR 37 n 37 THR 37 A ALA 38 n 38 ALA 38 A ILE 39 n 39 ILE 39 A TRP 40 n 40 TRP 40 A TYR 41 n 41 TYR 41 A TYR 42 n 42 TYR 42 A ASP 43 n 43 ASP 43 A TYR 44 n 44 TYR 44 A SER 45 n 45 SER 45 A GLY 46 n 46 GLY 46 A LYS 47 n 47 LYS 47 A ARG 48 n 48 ARG 48 A GLN 49 n 49 GLN 49 A VAL 50 n 50 VAL 50 A VAL 51 n 51 VAL 51 A ILE 52 n 52 ILE 52 A HIS 53 n 53 HIS 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A ASP 56 n 56 ASP 56 A PRO 57 n 57 PRO 57 A LYS 58 n 58 LYS 58 A LEU 59 n 59 LEU 59 A VAL 60 n 60 VAL 60 A ASP 61 n 61 ASP 61 A LYS 62 n 62 LYS 62 A ARG 63 n 63 ARG 63 A PHE 64 n 64 PHE 64 A ARG 65 n 65 ARG 65 A GLY 66 n 66 GLY 66 A ARG 67 n 67 ARG 67 A ALA 68 n 68 ALA 68 A GLU 69 n 69 GLU 69 A LEU 70 n 70 LEU 70 A MET 71 n 71 MET 71 A GLY 72 n 72 GLY 72 A ASN 73 n 73 ASN 73 A MET 74 n 74 MET 74 A ASP 75 n 75 ASP 75 A HIS 76 n 76 HIS 76 A LYS 77 n 77 LYS 77 A VAL 78 n 78 VAL 78 A CYS 79 n 79 CYS 79 A ASN 80 n 80 ASN 80 A LEU 81 n 81 LEU 81 A LEU 82 n 82 LEU 82 A LEU 83 n 83 LEU 83 A LYS 84 n 84 LYS 84 A ASP 85 n 85 ASP 85 A LEU 86 n 86 LEU 86 A LYS 87 n 87 LYS 87 A PRO 88 n 88 PRO 88 A GLU 89 n 89 GLU 89 A ASP 90 n 90 ASP 90 A SER 91 n 91 SER 91 A GLY 92 n 92 GLY 92 A THR 93 n 93 THR 93 A TYR 94 n 94 TYR 94 A ASN 95 n 95 ASN 95 A PHE 96 n 96 PHE 96 A ARG 97 n 97 ARG 97 A PHE 98 n 98 PHE 98 A GLU 99 n 99 GLU 99 A ILE 100 n 100 ILE 100 A SER 101 n 101 SER 101 A ASP 102 n 102 ASP 102 A SER 103 n 103 SER 103 A ASN 104 n 104 ASN 104 A ARG 105 n 105 ARG 105 A TRP 106 n 106 TRP 106 A LEU 107 n 107 LEU 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A LYS 110 n 110 LYS 110 A GLY 111 n 111 GLY 111 A THR 112 n 112 THR 112 A THR 113 n 113 THR 113 A VAL 114 n 114 VAL 114 A THR 115 n 115 THR 115 A VAL 116 n 116 VAL 116 A THR 117 n 117 THR 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 5 A N SER 5 A O ILE 23 A O ILE 23 A N VAL 10 A N VAL 10 A O THR 113 A O THR 113 A N VAL 114 A N VAL 114 A O GLY 92 A O GLY 92 A N GLU 99 A N GLU 99 A O THR 37 A O THR 37 A N TYR 42 A N TYR 42 A O GLN 49 A O GLN 49 A N VAL 10 A N VAL 10 A O THR 113 A O THR 113 A N VAL 114 A N VAL 114 A O GLY 92 A O GLY 92 A N PHE 98 A N PHE 98 A O TRP 106 A O TRP 106 A N ILE 20 A N ILE 20 A O LEU 81 A O LEU 81 A N LEU 82 A N LEU 82 A O GLU 69 A O GLU 69 1 A CA ASP 119 A CA ASP 119 1 Y 1 A C ASP 119 A C ASP 119 1 Y 1 A O ASP 119 A O ASP 119 1 Y 1 A CB ASP 119 A CB ASP 119 1 Y 1 A CG ASP 119 A CG ASP 119 1 Y 1 A OD1 ASP 119 A OD1 ASP 119 1 Y 1 A OD2 ASP 119 A OD2 ASP 119 1 Y 1 A ASN 34 -140.55 33.05 1 A ASP 56 -174.59 95.68 1 A LYS 110 -71.12 -72.98 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER_REP.TOP BENZYL2.PARAM BENZYL2.TOP ION.PARAM ION.TOP 39.1 -2.64 0.00 0.00 -2.64 0.00 5.29 BULK SOLVENT MODEL USED 0.253 0.011 0.209 0.209 2.10 19.72 512 9667 5.3 98.3 RANDOM 254519.82 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT DOMAIN A OF PDB ENTRY 1QFO FLAT MODEL 52.8331 0.345172 0.35 0.27 6.00 0.30 0.26 2.10 19.72 71 1034 35 0 928 0.011 1.3 25.5 0.85 3.58 1.00 4.30 1.00 5.80 1.50 6.82 1.50 0.309 0.034 0.284 2.23 81 1384 6 5.5 90.7 18.1 2.100 20.000 1OD9 9849 -1.500 0.11000 1 23.4000 11.800 99.9 0.72000 2.10 2.17 2.200 1 99.8 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE N-terminal of Sialoadhesin in complex with Me-a-9-N-benzoyl-amino-9-deoxy-Neu5Ac (BENZ compound) 1 N N 2 N N 3 N N 4 N N A ASP 56 A ASP 56 HELX_P A VAL 60 A VAL 60 5 1 5 A ASP 61 A ASP 61 HELX_P A ARG 65 A ARG 65 5 2 5 A ASN 73 A ASN 73 HELX_P A LYS 77 A LYS 77 5 3 5 A LYS 87 A LYS 87 HELX_P A SER 91 A SER 91 5 4 5 disulf 2.042 A CYS 22 A SG CYS 22 1_555 A CYS 79 A SG CYS 79 1_555 LECTIN/IMMUNE SYSTEM LECTIN/IMMUNE SYSTEM, IMMUNE SYSTEM, IMMUNOGLOBULIN SUPERFAMILY, CARBOHYDRATE BINDING, SIGLEC, INHIBITOR DESIGN, LECTIN-IMMUNE SYSTEM complex SN_MOUSE UNP 1 Q62230 20 138 1OD9 1 119 Q62230 A 1 1 119 2 5 4 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 3 A GLY 3 A SER 5 A SER 5 A ILE 23 A ILE 23 A SER 25 A SER 25 A ASN 9 A ASN 9 A LEU 13 A LEU 13 A THR 112 A THR 112 A THR 117 A THR 117 A GLY 92 A GLY 92 A GLU 99 A GLU 99 A THR 37 A THR 37 A TYR 42 A TYR 42 A GLN 49 A GLN 49 A HIS 53 A HIS 53 A ASN 9 A ASN 9 A LEU 13 A LEU 13 A THR 112 A THR 112 A THR 117 A THR 117 A GLY 92 A GLY 92 A GLU 99 A GLU 99 A ARG 105 A ARG 105 A LEU 107 A LEU 107 A LEU 18 A LEU 18 A ILE 20 A ILE 20 A LEU 81 A LEU 81 A LEU 83 A LEU 83 A ALA 68 A ALA 68 A LEU 70 A LEU 70 96 P 43 21 2