0.023918
0.000000
0.005627
0.000000
0.018900
0.000000
0.000000
0.000000
0.016314
0.00000
0.00000
0.00000
Cohen, S.X.
Muller, C.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
103.24
90.00
41.810
52.910
62.970
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Embo J.
EMJODG
0897
0261-4189
22
1835
10.1093/EMBOJ/CDG182
12682016
Crystal Structure of the Gcm Domain-DNA Complex: A DNA-Binding Domain with a Novel Fold and Mode of Target Site Recognition
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1999-11-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.931
1.0
ID14-4
ESRF
0.931
SYNCHROTRON
ESRF BEAMLINE ID14-4
ZN-CONTAINING DNA-BINDING DOMAIN
20463.223
MGCM1
GCM DOMAIN, RESIDUES 1-174
1
man
polymer
DNA TARGET SITE OF THE GCM DOMAIN
4032.622
5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3'
1
syn
polymer
DNA TARGET SITE OF THE GCM DOMAIN
3912.550
5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
4
nat
water
MURINE GCMA (GLIA CELL MISSING) TRANSCRIPTION FACTOR GCM1
DNA OLIGONUCLEOTIDE
DNA OLIGONUCLEOTIDE
no
no
MELDDFDPEDKEILSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVV
VCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETK
LEAEARRAMKKVHM
MELDDFDPEDKEILSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVV
VCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETK
LEAEARRAMKKVHM
A
polypeptide(L)
no
no
(DC)(DG)(DA)(DT)(DG)(DC)(DG)(DG)(DG)(DT)(DG)(DC)(DA)
CGATGCGGGTGCA
C
polydeoxyribonucleotide
no
no
(DT)(DG)(DC)(DA)(DC)(DC)(DC)(DG)(DC)(DA)(DT)(DC)(DG)
TGCACCCGCATCG
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MOUSE
sample
10090
MUS MUSCULUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET28A
1
2.39
48.46
6.00
pH 6.00
-1.930
1
19
C
1001
D
1026
-3.563
C_DC1001:DG1026_D
1
-1.440
-0.055
-0.063
-0.178
4.268
1
19
C
1002
D
1025
-2.779
C_DG1002:DC1025_D
2
-0.908
-0.137
0.136
-0.129
1.430
1
20
C
1003
D
1024
1.484
C_DA1003:DT1024_D
3
-8.988
-0.013
-0.372
-0.296
9.734
1
20
C
1004
D
1023
1.830
C_DT1004:DA1023_D
4
-0.709
0.089
-0.417
-0.102
1.148
1
19
C
1005
D
1022
0.897
C_DG1005:DC1022_D
5
-3.510
-0.144
-0.176
-0.098
-2.877
1
19
C
1006
D
1021
1.973
C_DC1006:DG1021_D
6
2.711
0.190
-0.307
0.014
5.593
1
19
C
1007
D
1020
-3.214
C_DG1007:DC1020_D
7
10.404
-0.078
-0.314
-0.103
-0.436
1
19
C
1008
D
1019
-5.906
C_DG1008:DC1019_D
8
-0.838
0.008
0.122
0.012
-9.811
1
19
C
1009
D
1018
-1.072
C_DG1009:DC1018_D
9
-8.684
-0.272
-0.322
-0.059
-1.823
1
20
C
1010
D
1017
-2.194
C_DT1010:DA1017_D
10
2.032
-0.119
0.130
-0.210
-1.996
1
19
C
1011
D
1016
-1.918
C_DG1011:DC1016_D
11
-1.035
-0.201
0.222
-0.153
-3.792
1
19
C
1012
D
1015
1.489
C_DC1012:DG1015_D
12
4.286
0.083
-0.128
-0.255
-8.689
1
20
C
1013
D
1014
7.357
C_DA1013:DT1014_D
13
-2.322
-0.055
-0.304
-0.140
3.138
30.155
C
C
1001
1002
9.090
D
D
1026
1025
3.214
4.710
0.930
-0.101
CC_DC1001DG1002:DC1025DG1026_DD
1
-0.733
1.414
29.785
-1.132
-1.934
3.510
37.753
C
C
1002
1003
2.199
D
D
1025
1024
3.524
1.423
-0.817
0.002
CC_DG1002DA1003:DT1024DC1025_DD
2
0.514
-0.795
37.724
-0.195
1.334
3.015
31.173
C
C
1003
1004
7.664
D
D
1024
1023
3.107
4.107
0.701
-0.607
CC_DA1003DT1004:DA1023DT1024_DD
3
0.571
-1.066
30.903
-1.865
-1.203
2.893
31.567
C
C
1004
1005
24.661
D
D
1023
1022
3.502
13.032
-0.340
-0.788
CC_DT1004DG1005:DC1022DA1023_DD
4
-0.839
1.588
28.802
-3.929
0.465
3.371
34.997
C
C
1005
1006
4.255
D
D
1022
1021
3.434
2.556
0.496
-0.938
CC_DG1005DC1006:DG1021DC1022_DD
5
0.937
-1.559
34.894
-1.961
-0.678
3.199
26.225
C
C
1006
1007
13.821
D
D
1021
1020
3.323
6.213
0.088
-0.144
CC_DC1006DG1007:DC1020DG1021_DD
6
0.282
-0.628
25.489
-2.016
-0.118
3.394
36.796
C
C
1007
1008
7.694
D
D
1020
1019
3.422
4.832
-0.770
-0.533
CC_DG1007DG1008:DC1019DC1020_DD
7
-4.523
7.202
36.216
-1.536
0.573
3.508
34.437
C
C
1008
1009
8.041
D
D
1019
1018
3.538
4.735
1.020
-0.712
CC_DG1008DG1009:DC1018DC1019_DD
8
4.243
-7.206
33.862
-2.003
-1.005
2.945
30.507
C
C
1009
1010
8.653
D
D
1018
1017
3.078
4.521
-0.759
-1.222
CC_DG1009DT1010:DA1017DC1018_DD
9
-4.517
8.645
29.846
-3.160
0.606
3.149
34.600
C
C
1010
1011
9.610
D
D
1017
1016
3.244
5.690
0.004
-0.323
CC_DT1010DG1011:DC1016DA1017_DD
10
-1.214
2.050
34.122
-1.406
-0.191
3.240
30.621
C
C
1011
1012
9.657
D
D
1016
1015
3.461
5.072
-0.130
-0.948
CC_DG1011DC1012:DG1015DC1016_DD
11
2.536
-4.828
30.104
-2.830
0.764
2.969
36.966
C
C
1012
1013
18.673
D
D
1015
1014
3.280
11.650
0.357
-0.537
CC_DC1012DA1013:DT1014DG1015_DD
12
1.056
-1.693
35.128
-2.387
-0.424
repository
Initial release
Version format compliance
Version format compliance
1
0
2003-04-08
1
1
2011-05-08
1
2
2011-07-13
PDBE
Y
PDBE
2003-02-19
REL
ZN
ZINC ION
HOH
water
ZN
1171
4
ZN
ZN
1171
A
ZN
1172
4
ZN
ZN
1172
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2001
5
HOH
HOH
2001
C
HOH
2002
5
HOH
HOH
2002
C
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
LEU
14
n
14
LEU
14
A
SER
15
n
15
SER
15
A
TRP
16
n
16
TRP
16
A
ASP
17
n
17
ASP
17
A
ILE
18
n
18
ILE
18
A
ASN
19
n
19
ASN
19
A
ASP
20
n
20
ASP
20
A
VAL
21
n
21
VAL
21
A
LYS
22
n
22
LYS
22
A
LEU
23
n
23
LEU
23
A
PRO
24
n
24
PRO
24
A
GLN
25
n
25
GLN
25
A
ASN
26
n
26
ASN
26
A
VAL
27
n
27
VAL
27
A
LYS
28
n
28
LYS
28
A
THR
29
n
29
THR
29
A
THR
30
n
30
THR
30
A
ASP
31
n
31
ASP
31
A
TRP
32
n
32
TRP
32
A
PHE
33
n
33
PHE
33
A
GLN
34
n
34
GLN
34
A
GLU
35
n
35
GLU
35
A
TRP
36
n
36
TRP
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
VAL
41
n
41
VAL
41
A
LYS
42
n
42
LYS
42
A
HIS
43
n
43
HIS
43
A
ILE
44
n
44
ILE
44
A
TYR
45
n
45
TYR
45
A
SER
46
n
46
SER
46
A
SER
47
n
47
SER
47
A
ASP
48
n
48
ASP
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
ASN
51
n
51
ASN
51
A
ALA
52
n
52
ALA
52
A
GLN
53
n
53
GLN
53
A
ARG
54
n
54
ARG
54
A
HIS
55
n
55
HIS
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
SER
58
n
58
SER
58
A
TRP
59
n
59
TRP
59
A
ALA
60
n
60
ALA
60
A
MET
61
n
61
MET
61
A
ARG
62
n
62
ARG
62
A
ASN
63
n
63
ASN
63
A
THR
64
n
64
THR
64
A
ASN
65
n
65
ASN
65
A
ASN
66
n
66
ASN
66
A
HIS
67
n
67
HIS
67
A
ASN
68
n
68
ASN
68
A
SER
69
n
69
SER
69
A
ARG
70
n
70
ARG
70
A
ILE
71
n
71
ILE
71
A
LEU
72
n
72
LEU
72
A
LYS
73
n
73
LYS
73
A
LYS
74
n
74
LYS
74
A
SER
75
n
75
SER
75
A
CYS
76
n
76
CYS
76
A
LEU
77
n
77
LEU
77
A
GLY
78
n
78
GLY
78
A
VAL
79
n
79
VAL
79
A
VAL
80
n
80
VAL
80
A
VAL
81
n
81
VAL
81
A
CYS
82
n
82
CYS
82
A
SER
83
n
83
SER
83
A
ARG
84
n
84
ARG
84
A
ASP
85
n
85
ASP
85
A
CYS
86
n
86
CYS
86
A
SER
87
n
87
SER
87
A
THR
88
n
88
THR
88
A
GLU
89
n
89
GLU
89
A
GLU
90
n
90
GLU
90
A
GLY
91
n
91
GLY
91
A
ARG
92
n
92
ARG
92
A
LYS
93
n
93
LYS
93
A
ILE
94
n
94
ILE
94
A
TYR
95
n
95
TYR
95
A
LEU
96
n
96
LEU
96
A
ARG
97
n
97
ARG
97
A
PRO
98
n
98
PRO
98
A
ALA
99
n
99
ALA
99
A
ILE
100
n
100
ILE
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
ARG
105
n
105
ARG
105
A
GLN
106
n
106
GLN
106
A
LYS
107
n
107
LYS
107
A
GLN
108
n
108
GLN
108
A
GLN
109
n
109
GLN
109
A
ARG
110
n
110
ARG
110
A
LYS
111
n
111
LYS
111
A
SER
112
n
112
SER
112
A
CYS
113
n
113
CYS
113
A
PRO
114
n
114
PRO
114
A
ASN
115
n
115
ASN
115
A
CYS
116
n
116
CYS
116
A
ASN
117
n
117
ASN
117
A
GLY
118
n
118
GLY
118
A
PRO
119
n
119
PRO
119
A
LEU
120
n
120
LEU
120
A
LYS
121
n
121
LYS
121
A
LEU
122
n
122
LEU
122
A
ILE
123
n
123
ILE
123
A
PRO
124
n
124
PRO
124
A
CYS
125
n
125
CYS
125
A
ARG
126
n
126
ARG
126
A
GLY
127
n
127
GLY
127
A
HIS
128
n
128
HIS
128
A
GLY
129
n
129
GLY
129
A
GLY
130
n
130
GLY
130
A
PHE
131
n
131
PHE
131
A
PRO
132
n
132
PRO
132
A
VAL
133
n
133
VAL
133
A
THR
134
n
134
THR
134
A
ASN
135
n
135
ASN
135
A
PHE
136
n
136
PHE
136
A
TRP
137
n
137
TRP
137
A
ARG
138
n
138
ARG
138
A
HIS
139
n
139
HIS
139
A
ASP
140
n
140
ASP
140
A
GLY
141
n
141
GLY
141
A
ARG
142
n
142
ARG
142
A
PHE
143
n
143
PHE
143
A
ILE
144
n
144
ILE
144
A
PHE
145
n
145
PHE
145
A
PHE
146
n
146
PHE
146
A
GLN
147
n
147
GLN
147
A
SER
148
n
148
SER
148
A
LYS
149
n
149
LYS
149
A
GLY
150
n
150
GLY
150
A
GLU
151
n
151
GLU
151
A
HIS
152
n
152
HIS
152
A
ASP
153
n
153
ASP
153
A
HIS
154
n
154
HIS
154
A
PRO
155
n
155
PRO
155
A
ARG
156
n
156
ARG
156
A
PRO
157
n
157
PRO
157
A
GLU
158
n
158
GLU
158
A
THR
159
n
159
THR
159
A
LYS
160
n
160
LYS
160
A
LEU
161
n
161
LEU
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
GLU
164
n
164
GLU
164
A
ALA
165
n
165
ALA
165
A
ARG
166
n
166
ARG
166
A
ARG
167
n
167
ARG
167
A
ALA
168
n
168
ALA
168
A
MET
169
n
169
MET
169
A
LYS
170
n
170
LYS
170
A
LYS
171
n
171
LYS
171
A
n
172
172
A
n
173
173
A
n
174
174
A
DC
1001
n
1
DC
1001
C
DG
1002
n
2
DG
1002
C
DA
1003
n
3
DA
1003
C
DT
1004
n
4
DT
1004
C
DG
1005
n
5
DG
1005
C
DC
1006
n
6
DC
1006
C
DG
1007
n
7
DG
1007
C
DG
1008
n
8
DG
1008
C
DG
1009
n
9
DG
1009
C
DT
1010
n
10
DT
1010
C
DG
1011
n
11
DG
1011
C
DC
1012
n
12
DC
1012
C
DA
1013
n
13
DA
1013
C
DT
1014
n
1
DT
1014
D
DG
1015
n
2
DG
1015
D
DC
1016
n
3
DC
1016
D
DA
1017
n
4
DA
1017
D
DC
1018
n
5
DC
1018
D
DC
1019
n
6
DC
1019
D
DC
1020
n
7
DC
1020
D
DG
1021
n
8
DG
1021
D
DC
1022
n
9
DC
1022
D
DA
1023
n
10
DA
1023
D
DT
1024
n
11
DT
1024
D
DC
1025
n
12
DC
1025
D
DG
1026
n
13
DG
1026
D
author_and_software_defined_assembly
PQS
3
trimeric
A
CYS
125
A
SG
CYS
125
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
95.4
A
CYS
125
A
SG
CYS
125
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
CYS
76
A
SG
CYS
76
1_555
98.4
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
CYS
76
A
SG
CYS
76
1_555
91.1
A
CYS
125
A
SG
CYS
125
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
152
A
ND1
HIS
152
1_555
113.6
A
HIS
154
A
NE2
HIS
154
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
152
A
ND1
HIS
152
1_555
133.5
A
CYS
76
A
SG
CYS
76
1_555
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
152
A
ND1
HIS
152
1_555
117.7
A
CYS
113
A
SG
CYS
113
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
116
A
SG
CYS
116
1_555
113.9
A
CYS
113
A
SG
CYS
113
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
86
A
SG
CYS
86
1_555
117.9
A
CYS
116
A
SG
CYS
116
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
86
A
SG
CYS
86
1_555
112.2
A
CYS
113
A
SG
CYS
113
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
82
A
SG
CYS
82
1_555
110.0
A
CYS
116
A
SG
CYS
116
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
82
A
SG
CYS
82
1_555
89.5
A
CYS
86
A
SG
CYS
86
1_555
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
82
A
SG
CYS
82
1_555
109.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
43
A
N
HIS
43
A
O
PHE
146
A
O
PHE
146
A
N
LYS
149
A
N
LYS
149
A
O
THR
134
A
O
THR
134
A
N
TRP
137
A
N
TRP
137
A
O
LEU
72
A
O
LEU
72
A
N
SER
75
A
N
SER
75
A
O
ARG
62
A
O
ARG
62
A
N
LEU
96
A
N
LEU
96
A
O
VAL
80
A
O
VAL
80
A
N
VAL
81
A
N
VAL
81
A
O
LYS
121
A
O
LYS
121
1
A
CG
LEU
14
A
CG
LEU
14
1
Y
1
A
CD1
LEU
14
A
CD1
LEU
14
1
Y
1
A
CD2
LEU
14
A
CD2
LEU
14
1
Y
1
A
OG
SER
15
A
OG
SER
15
1
Y
1
A
CG
TRP
16
A
CG
TRP
16
1
Y
1
A
CD1
TRP
16
A
CD1
TRP
16
1
Y
1
A
CD2
TRP
16
A
CD2
TRP
16
1
Y
1
A
NE1
TRP
16
A
NE1
TRP
16
1
Y
1
A
CE2
TRP
16
A
CE2
TRP
16
1
Y
1
A
CE3
TRP
16
A
CE3
TRP
16
1
Y
1
A
CZ2
TRP
16
A
CZ2
TRP
16
1
Y
1
A
CZ3
TRP
16
A
CZ3
TRP
16
1
Y
1
A
CH2
TRP
16
A
CH2
TRP
16
1
Y
1
A
CA
LYS
171
A
CA
LYS
171
1
Y
1
A
C
LYS
171
A
C
LYS
171
1
Y
1
A
O
LYS
171
A
O
LYS
171
1
Y
1
A
CB
LYS
171
A
CB
LYS
171
1
Y
1
A
CG
LYS
171
A
CG
LYS
171
1
Y
1
A
CD
LYS
171
A
CD
LYS
171
1
Y
1
A
CE
LYS
171
A
CE
LYS
171
1
Y
1
A
NZ
LYS
171
A
NZ
LYS
171
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
ASP
4
A
ASP
4
1
Y
1
A
ASP
5
A
ASP
5
1
Y
1
A
PHE
6
A
PHE
6
1
Y
1
A
ASP
7
A
ASP
7
1
Y
1
A
PRO
8
A
PRO
8
1
Y
1
A
GLU
9
A
GLU
9
1
Y
1
A
ASP
10
A
ASP
10
1
Y
1
A
LYS
11
A
LYS
11
1
Y
1
A
GLU
12
A
GLU
12
1
Y
1
A
ILE
13
A
ILE
13
1
Y
1
A
VAL
172
A
VAL
172
1
Y
1
A
HIS
173
A
HIS
173
1
Y
1
A
MET
174
A
MET
174
1
Y
1
C
DG
1009
0.064
SIDE CHAIN
1
-4.82
0.80
102.40
97.58
D
D
D
C3'
C2'
C1'
DC
DC
DC
1025
1025
1025
N
1
A
SER
15
-108.87
-80.11
1
A
ILE
18
-159.44
-128.50
1
A
ASP
20
-38.71
165.15
1
A
GLN
25
-141.97
37.18
1
A
ASP
31
-39.91
146.88
1
A
TRP
36
-119.12
62.14
1
A
SER
39
72.64
41.99
1
A
ILE
44
-141.90
16.67
1
A
TYR
45
-17.51
144.59
1
A
ASP
49
-63.73
97.30
1
A
ASN
68
-165.39
103.40
1
A
ASP
85
56.31
-5.41
1
A
CYS
86
-29.23
151.95
1
A
THR
88
-58.84
-157.67
1
A
ASN
115
-104.28
-78.83
1
A
ASN
117
53.98
19.95
1
A
ARG
126
171.37
28.68
1
A
ASP
140
-116.48
58.49
1
A
ASP
153
-101.09
51.47
1
A
HIS
154
-172.06
147.48
1
A
PRO
157
-68.51
-176.94
1
A
LYS
170
-100.70
-62.48
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER_PROTIN.TOP
ION.PARAM
ION.TOP
55.4
-18.29
0.00
6.80
23.39
0.00
-5.10
N-TERMINAL RESIDUES 1-13 AND C- TERMINAL RESIDUES 172-174 ARE DISORDERED.
0.281
0.012
0.219
0.219
2.85
19.35
516
6230
8.3
97.8
RANDOM
462777.10
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MIR
FLAT MODEL
38.7922
0.315059
0.45
0.41
5.00
0.77
0.66
2.85
19.35
4
1810
2
527
1277
0.008
1.3
21.8
1.03
1.31
1.50
2.35
2.00
1.67
2.00
2.76
2.50
0.627
0.074
0.424
3.03
71
938
6
7.0
96.3
133.3
2.850
30.000
1ODH
18243
0.04900
1
24.0000
2.900
97.9
0.28100
2.85
2.95
4.000
1
2.40
95.6
refinement
CNS
1.0
data reduction
HKL
data scaling
SCALEPACK
phasing
SOLVE
MGCM1
Structure of the GCM domain bound to DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
THE TRIMERIC ASSEMBLY DESCRIBED BELOW IS
MADE UP BYA PROTEIN MONOMER BOUND TO A DNA
DUPLEX.
A
ASP
49
A
ASP
49
HELX_P
A
ARG
54
A
ARG
54
1
1
6
A
CYS
101
A
CYS
101
HELX_P
A
LYS
111
A
LYS
111
1
2
11
A
THR
159
A
THR
159
HELX_P
A
ALA
168
A
ALA
168
1
3
10
metalc
2.274
A
ZN
1171
D
ZN
ZN
1_555
A
CYS
125
A
SG
CYS
125
1_555
metalc
2.332
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
154
A
NE2
HIS
154
1_555
metalc
2.289
A
ZN
1171
D
ZN
ZN
1_555
A
CYS
76
A
SG
CYS
76
1_555
metalc
2.179
A
ZN
1171
D
ZN
ZN
1_555
A
HIS
152
A
ND1
HIS
152
1_555
metalc
2.696
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
113
A
SG
CYS
113
1_555
metalc
2.522
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
116
A
SG
CYS
116
1_555
metalc
2.513
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
86
A
SG
CYS
86
1_555
metalc
2.482
A
ZN
1172
E
ZN
ZN
1_555
A
CYS
82
A
SG
CYS
82
1_555
hydrog
WATSON-CRICK
C
DC
1001
B
N3
DC
1
1_555
D
DG
1026
C
N1
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
1001
B
N4
DC
1
1_555
D
DG
1026
C
O6
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
1001
B
O2
DC
1
1_555
D
DG
1026
C
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DG
1002
B
N1
DG
2
1_555
D
DC
1025
C
N3
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
1002
B
N2
DG
2
1_555
D
DC
1025
C
O2
DC
12
1_555
hydrog
WATSON-CRICK
C
DG
1002
B
O6
DG
2
1_555
D
DC
1025
C
N4
DC
12
1_555
hydrog
WATSON-CRICK
C
DA
1003
B
N1
DA
3
1_555
D
DT
1024
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
1003
B
N6
DA
3
1_555
D
DT
1024
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
C
DT
1004
B
N3
DT
4
1_555
D
DA
1023
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
1004
B
O4
DT
4
1_555
D
DA
1023
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
C
DG
1005
B
N1
DG
5
1_555
D
DC
1022
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
1005
B
N2
DG
5
1_555
D
DC
1022
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
1005
B
O6
DG
5
1_555
D
DC
1022
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DC
1006
B
N3
DC
6
1_555
D
DG
1021
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
1006
B
N4
DC
6
1_555
D
DG
1021
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
1006
B
O2
DC
6
1_555
D
DG
1021
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
C
DG
1007
B
N1
DG
7
1_555
D
DC
1020
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
1007
B
N2
DG
7
1_555
D
DC
1020
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
1007
B
O6
DG
7
1_555
D
DC
1020
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
1008
B
N1
DG
8
1_555
D
DC
1019
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
1008
B
N2
DG
8
1_555
D
DC
1019
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
1008
B
O6
DG
8
1_555
D
DC
1019
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
1009
B
N1
DG
9
1_555
D
DC
1018
C
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
1009
B
N2
DG
9
1_555
D
DC
1018
C
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
1009
B
O6
DG
9
1_555
D
DC
1018
C
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DT
1010
B
N3
DT
10
1_555
D
DA
1017
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
1010
B
O4
DT
10
1_555
D
DA
1017
C
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DG
1011
B
N1
DG
11
1_555
D
DC
1016
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
1011
B
N2
DG
11
1_555
D
DC
1016
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
1011
B
O6
DG
11
1_555
D
DC
1016
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
C
DC
1012
B
N3
DC
12
1_555
D
DG
1015
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
1012
B
N4
DC
12
1_555
D
DG
1015
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
1012
B
O2
DC
12
1_555
D
DG
1015
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DA
1013
B
N1
DA
13
1_555
D
DT
1014
C
N3
DT
1
1_555
hydrog
WATSON-CRICK
C
DA
1013
B
N6
DA
13
1_555
D
DT
1014
C
O4
DT
1
1_555
TRANSCRIPTION FACTOR/DNA
TRANSCRIPTION FACTOR/DNA, TRANSCRIPTION FACTOR, DNA-BINDING DOMAIN, PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR-DNA complex
P70348
UNP
1
P70348
1ODH
PDB
2
1ODH
1ODH
PDB
3
1ODH
1
174
1ODH
1
174
P70348
A
1
1
174
1001
1013
1ODH
1001
1013
1ODH
C
2
1
13
1014
1026
1ODH
1014
1026
1ODH
D
3
1
13
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
42
A
LYS
42
A
HIS
43
A
HIS
43
A
ILE
144
A
ILE
144
A
LYS
149
A
LYS
149
A
THR
134
A
THR
134
A
HIS
139
A
HIS
139
A
LEU
72
A
LEU
72
A
CYS
76
A
CYS
76
A
MET
61
A
MET
61
A
THR
64
A
THR
64
A
TYR
95
A
TYR
95
A
LEU
96
A
LEU
96
A
VAL
79
A
VAL
79
A
CYS
82
A
CYS
82
A
LEU
120
A
LEU
120
A
ILE
123
A
ILE
123
BINDING SITE FOR RESIDUE ZN A1171
Software
4
BINDING SITE FOR RESIDUE ZN A1172
Software
4
A
CYS
76
A
CYS
76
4
1_555
A
CYS
125
A
CYS
125
4
1_555
A
HIS
152
A
HIS
152
4
1_555
A
HIS
154
A
HIS
154
4
1_555
A
CYS
82
A
CYS
82
4
1_555
A
CYS
86
A
CYS
86
4
1_555
A
CYS
113
A
CYS
113
4
1_555
A
CYS
116
A
CYS
116
4
1_555
4
P 1 21 1