0.019231
0.000000
0.000000
0.000000
0.016835
0.000000
0.000000
0.000000
0.016077
0.00000
0.00000
0.00000
Thanki, N.
Kervinen, J.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
52.000
59.400
62.200
C30 H45 N3 O6
543.695
di-tert-butyl {iminobis[(2S,3S)-3-hydroxy-1-phenylbutane-4,2-diyl]}biscarbamate
BMS-182193
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
N
N
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
N
19
N
N
N
20
N
C
N
21
N
C
N
22
R
C
N
23
N
O
N
24
S
C
N
25
N
N
N
26
N
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
Y
32
N
C
N
33
N
O
N
34
N
C
N
35
N
O
N
36
N
C
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
N
N
106
N
C
N
107
N
N
N
108
N
N
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
R
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
S
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
Y
226
N
C
Y
227
N
N
Y
228
N
C
Y
229
N
C
Y
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
S
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
N
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
S
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
Y
27
N
doub
Y
28
N
sing
Y
29
N
sing
N
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
Y
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
Y
56
N
doub
Y
57
N
sing
Y
58
N
sing
N
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
doub
N
63
N
sing
Y
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
Y
225
N
sing
Y
226
N
doub
Y
227
N
doub
N
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
NE
Protein Pept.Lett.
PPELEN
2077
0929-8665
3
399
-1
Structural Analysis of the Native and Drug-Resistant HIV-1 Proteinases Complexed with an Aminodiol Inhibitor
1996
10.2210/pdb1odw/pdb
pdb_00001odw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
1994-09-26
MAR scanner 300 mm plate
M
x-ray
1
1.5418
1.0
1.5418
10789.729
HIV-1 PROTEASE
3.4.23.16
2
man
polymer
543.695
di-tert-butyl {iminobis[(2S,3S)-3-hydroxy-1-phenylbutane-4,2-diyl]}biscarbamate
1
syn
non-polymer
18.015
water
65
nat
water
RETROPEPSIN
no
no
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
sample
gag-pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
PMAL-C2
1
2.22
44.71
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_site
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Source and taxonomy
Structure summary
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-04-01
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-09-16
REL
REL
0E8
di-tert-butyl {iminobis[(2S,3S)-3-hydroxy-1-phenylbutane-4,2-diyl]}biscarbamate
HOH
water
OTB
201
2
0E8
0E8
201
A
HOH
301
3
HOH
HOH
301
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
323
3
HOH
HOH
323
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
358
3
HOH
HOH
358
A
HOH
360
3
HOH
HOH
360
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
375
3
HOH
HOH
375
A
HOH
384
3
HOH
HOH
384
A
HOH
387
3
HOH
HOH
387
A
HOH
391
3
HOH
HOH
391
A
HOH
395
3
HOH
HOH
395
A
HOH
400
3
HOH
HOH
400
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
318
3
HOH
HOH
318
B
HOH
319
3
HOH
HOH
319
B
HOH
326
3
HOH
HOH
326
B
HOH
327
3
HOH
HOH
327
B
HOH
332
3
HOH
HOH
332
B
HOH
337
3
HOH
HOH
337
B
HOH
338
3
HOH
HOH
338
B
HOH
340
3
HOH
HOH
340
B
HOH
341
3
HOH
HOH
341
B
HOH
345
3
HOH
HOH
345
B
HOH
346
3
HOH
HOH
346
B
HOH
348
3
HOH
HOH
348
B
HOH
349
3
HOH
HOH
349
B
HOH
350
3
HOH
HOH
350
B
HOH
352
3
HOH
HOH
352
B
HOH
353
3
HOH
HOH
353
B
HOH
356
3
HOH
HOH
356
B
HOH
361
3
HOH
HOH
361
B
HOH
362
3
HOH
HOH
362
B
HOH
364
3
HOH
HOH
364
B
HOH
376
3
HOH
HOH
376
B
HOH
381
3
HOH
HOH
381
B
HOH
385
3
HOH
HOH
385
B
HOH
388
3
HOH
HOH
388
B
HOH
399
3
HOH
HOH
399
B
HOH
401
3
HOH
HOH
401
B
HOH
404
3
HOH
HOH
404
B
HOH
405
3
HOH
HOH
405
B
HOH
406
3
HOH
HOH
406
B
HOH
407
3
HOH
HOH
407
B
HOH
408
3
HOH
HOH
408
B
HOH
414
3
HOH
HOH
414
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
VAL
3
n
3
VAL
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
VAL
3
n
3
VAL
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
GLN
7
n
7
GLN
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
LEU
63
n
63
LEU
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
author_and_software_defined_assembly
PISA
2
dimeric
5340
-17
9190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
18
A
O
GLN
18
A
N
ILE
15
A
N
ILE
15
A
O
LYS
14
A
O
LYS
14
A
N
GLU
65
A
N
GLU
65
A
O
ILE
62
A
O
ILE
62
A
N
GLY
73
A
N
GLY
73
A
O
LYS
43
A
O
LYS
43
A
N
GLN
58
A
N
GLN
58
A
O
ARG
57
A
O
ARG
57
A
N
VAL
77
A
N
VAL
77
A
O
THR
96
A
O
THR
96
B
N
ASN
98
B
N
ASN
98
B
O
VAL
11
B
O
VAL
11
B
N
ALA
22
B
N
ALA
22
B
O
LEU
33
B
O
LEU
33
B
N
LEU
76
B
N
LEU
76
B
O
VAL
75
B
O
VAL
75
B
N
TYR
59
B
N
TYR
59
B
O
GLY
52
B
O
GLY
52
B
N
GLY
49
B
N
GLY
49
B
O
ILE
62
B
O
ILE
62
B
N
GLY
73
B
N
GLY
73
1
9.29
0.90
118.30
127.59
A
A
A
CB
CG
OD1
ASP
ASP
ASP
29
29
29
N
1
-14.63
0.90
118.30
103.67
A
A
A
CB
CG
OD2
ASP
ASP
ASP
29
29
29
N
1
-16.48
2.00
110.40
93.92
A
A
A
CB
CA
C
GLU
GLU
GLU
34
34
34
N
1
21.90
2.20
113.40
135.30
A
A
A
CA
CB
CG
GLU
GLU
GLU
34
34
34
N
1
-7.85
1.20
123.30
115.45
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
34
34
34
N
1
13.70
2.00
118.30
132.00
A
A
A
CG
CD
OE2
GLU
GLU
GLU
34
34
34
N
1
17.68
2.20
113.40
131.08
A
A
A
CA
CB
CG
LYS
LYS
LYS
43
43
43
N
1
6.71
1.10
119.40
126.11
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
57
57
57
N
1
-5.33
0.50
120.30
114.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
1
10.89
1.60
122.70
133.59
A
A
A
O
C
N
ASP
ASP
GLN
60
60
61
Y
1
18.90
2.20
113.40
132.30
A
A
A
CA
CB
CG
GLN
GLN
GLN
61
61
61
N
1
-12.46
1.40
110.10
97.64
A
A
A
N
CA
CB
ALA
ALA
ALA
71
71
71
N
1
9.85
1.60
122.70
132.55
A
A
A
O
C
N
GLY
GLY
THR
73
73
74
Y
1
12.91
2.00
110.90
123.81
A
A
A
CA
CB
CG2
ILE
ILE
ILE
84
84
84
N
1
9.60
0.50
120.30
129.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
1
-3.39
0.50
120.30
116.91
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
87
87
87
N
1
11.30
1.80
110.60
121.90
A
A
A
N
CA
CB
PHE
PHE
PHE
99
99
99
N
1
10.12
1.50
110.90
121.02
B
B
B
CA
CB
CG2
VAL
VAL
VAL
3
3
3
N
1
16.93
2.20
113.40
130.33
B
B
B
CA
CB
CG
GLN
GLN
GLN
7
7
7
N
1
9.66
1.40
123.60
133.26
B
B
B
CD
NE
CZ
ARG
ARG
ARG
8
8
8
N
1
3.45
0.50
120.30
123.75
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
-4.32
0.50
120.30
115.98
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
11.63
1.90
110.20
121.83
B
B
B
CB
CA
C
LEU
LEU
LEU
19
19
19
N
1
17.52
2.20
113.40
130.92
B
B
B
CA
CB
CG
LYS
LYS
LYS
20
20
20
N
1
-7.38
0.90
118.30
110.92
B
B
B
CB
CG
OD1
ASP
ASP
ASP
30
30
30
N
1
-13.08
2.00
110.40
97.32
B
B
B
CB
CA
C
GLU
GLU
GLU
34
34
34
N
1
10.00
1.20
123.30
133.30
B
B
B
OE1
CD
OE2
GLU
GLU
GLU
34
34
34
N
1
-12.73
2.00
118.30
105.57
B
B
B
CG
CD
OE2
GLU
GLU
GLU
34
34
34
N
1
22.94
1.70
113.30
136.24
B
B
B
CA
CB
CG
MET
MET
MET
36
36
36
N
1
-10.22
1.70
113.30
103.08
B
B
B
CA
CB
CG
MET
MET
MET
46
46
46
N
1
9.88
1.40
123.60
133.48
B
B
B
CD
NE
CZ
ARG
ARG
ARG
57
57
57
N
1
4.68
0.50
120.30
124.98
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
1
-5.16
0.60
121.00
115.84
B
B
B
CB
CG
CD1
TYR
TYR
TYR
59
59
59
N
1
12.04
1.20
123.30
135.34
B
B
B
OE1
CD
OE2
GLU
GLU
GLU
65
65
65
N
1
4.54
0.70
109.00
113.54
B
B
B
CE1
NE2
CD2
HIS
HIS
HIS
69
69
69
N
1
17.59
2.00
110.90
128.49
B
B
B
CA
CB
CG2
ILE
ILE
ILE
72
72
72
N
1
-17.90
2.70
111.60
93.70
B
B
B
CB
CA
C
THR
THR
THR
80
80
80
N
1
11.70
1.90
110.30
122.00
B
B
B
N
CA
CB
THR
THR
THR
80
80
80
N
1
10.89
1.40
112.40
123.29
B
B
B
CA
CB
CG2
THR
THR
THR
80
80
80
N
1
4.76
0.50
120.30
125.06
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
87
87
87
N
1
12.38
1.60
122.70
135.08
B
B
B
O
C
N
LEU
LEU
THR
90
90
91
Y
1
-10.76
1.70
123.20
112.44
B
B
B
O
C
N
ILE
ILE
GLY
93
93
94
Y
1
A
PRO
79
-69.83
76.98
1
B
PRO
79
-73.02
42.21
0.1650000
2.1
10.
10837
86.9
1
2.
2.1
10.
65
1618
39
0
1514
0.021
0.020
0.056
0.035
0.066
0.050
1.608
1.500
2.401
2.000
4.662
3.000
6.494
4.000
0.016
0.020
0.221
0.150
0.197
0.300
0.219
0.300
0.159
0.300
2.9
3.0
19.0
10.0
2.1
10.0
1ODW
10837
1.
0.0690000
1
2.9
86.9
refinement
PROLSQ
data reduction
DENZO
Native HIV-1 Proteinase
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
GLY
86
A
GLY
86
HELX_P
A
ILE
93
A
ILE
93
1
1
8
B
GLY
86
B
GLY
86
HELX_P
B
ILE
93
B
ILE
93
1
2
8
Hydrolase/Hydrolase Inhibitor
PROTEINASE, RETROPEPSIN, RETROVIRUS, HIV, Hydrolase-Hydrolase Inhibitor complex
POL_HV1H2
UNP
1
489
P04585
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
489
587
1ODW
1
99
P04585
A
1
1
99
489
587
1ODW
1
99
P04585
B
1
1
99
4
3
2
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
18
A
GLN
18
A
LEU
23
A
LEU
23
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
ILE
62
A
ILE
62
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
GLY
73
A
GLY
73
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
TYR
59
A
TYR
59
A
VAL
75
A
VAL
75
A
GLY
78
A
GLY
78
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
B
LEU
10
B
LEU
10
B
LYS
14
B
LYS
14
B
LEU
19
B
LEU
19
B
LEU
23
B
LEU
23
B
VAL
32
B
VAL
32
B
GLU
34
B
GLU
34
B
VAL
75
B
VAL
75
B
GLY
78
B
GLY
78
B
GLY
52
B
GLY
52
B
TYR
59
B
TYR
59
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
ILE
62
B
ILE
62
B
GLU
65
B
GLU
65
B
LYS
70
B
LYS
70
B
GLY
73
B
GLY
73
BINDING SITE FOR RESIDUE 0E8 A 201
A
0E8
201
Software
16
ACTIVE SITE
Author
2
A
ASP
25
A
ASP
25
16
1_555
A
GLY
27
A
GLY
27
16
1_555
A
GLY
48
A
GLY
48
16
1_555
A
GLY
49
A
GLY
49
16
1_555
A
ILE
50
A
ILE
50
16
1_555
A
PRO
81
A
PRO
81
16
1_555
A
ILE
84
A
ILE
84
16
1_555
A
HOH
301
D
HOH
16
1_555
B
ASP
25
B
ASP
25
16
1_555
B
GLY
27
B
GLY
27
16
1_555
B
ILE
47
B
ILE
47
16
1_555
B
GLY
48
B
GLY
48
16
1_555
B
GLY
49
B
GLY
49
16
1_555
B
ILE
50
B
ILE
50
16
1_555
B
PRO
81
B
PRO
81
16
1_555
B
HOH
401
E
HOH
16
1_555
A
ASP
25
A
ASP
25
2
1_555
B
ASP
25
B
ASP
25
2
1_555
19
P 21 21 21