0.015898 0.009179 0.000000 0.000000 0.018358 0.000000 0.000000 0.000000 0.012003 0.00000 0.00000 0.00000 Kervinen, J. Lubkowski, J. Zdanov, A. Wlodawer, A. Gustchina, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.900 62.900 83.310 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C45 H58 N6 O7 794.978 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE non-polymer C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 7 2314 2323 9827997 Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. 1998 10.2210/pdb1ody/pdb pdb_00001ody 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 MIRRORS IMAGE PLATE 1997-07-11 MACSCIENCE NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR591 10703.613 HIV-1 PROTEASE 3.4.23.16 2 man polymer 794.978 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE 1 syn non-polymer 18.015 water 145 nat water HIV-1 PR, RETROPEPSIN no no PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGAWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGAWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Human immunodeficiency virus 1 Escherichia sample 11706 HIV-1 M:B_HXB2R 562 Escherichia coli HXB2 1 2.22 44.62 6.2 pH 6.2 database_2 pdbx_database_status pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Refinement description 1 0 1999-02-16 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-07-13 REL REL LP1 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE HOH water LP-130 (HET ID LP1): ACE-NAL-VAL-STA-ABU-NAL-NH2 WHERE NAL IS NAPHTHYLALANINE, STA IS STATINE, AND ABU IS 2-AMINOBUTYRIC ACID. THE KI VALUE OF LP-130 FOR HIV-1 PR IS 8 NM. 1ODX PDB ENTRY 1ODX PDB experimental model LP1 201 2 LP1 LP1 201 A HOH 301 3 HOH HOH 301 A HOH 303 3 HOH HOH 303 A HOH 305 3 HOH HOH 305 A HOH 310 3 HOH HOH 310 A HOH 312 3 HOH HOH 312 A HOH 314 3 HOH HOH 314 A HOH 316 3 HOH HOH 316 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 332 3 HOH HOH 332 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 360 3 HOH HOH 360 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 380 3 HOH HOH 380 A HOH 384 3 HOH HOH 384 A HOH 386 3 HOH HOH 386 A HOH 387 3 HOH HOH 387 A HOH 388 3 HOH HOH 388 A HOH 390 3 HOH HOH 390 A HOH 392 3 HOH HOH 392 A HOH 393 3 HOH HOH 393 A HOH 394 3 HOH HOH 394 A HOH 395 3 HOH HOH 395 A HOH 396 3 HOH HOH 396 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 417 3 HOH HOH 417 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 426 3 HOH HOH 426 A HOH 427 3 HOH HOH 427 A HOH 428 3 HOH HOH 428 A HOH 429 3 HOH HOH 429 A HOH 431 3 HOH HOH 431 A HOH 432 3 HOH HOH 432 A HOH 433 3 HOH HOH 433 A HOH 435 3 HOH HOH 435 A HOH 438 3 HOH HOH 438 A HOH 441 3 HOH HOH 441 A HOH 445 3 HOH HOH 445 A HOH 302 3 HOH HOH 302 B HOH 304 3 HOH HOH 304 B HOH 306 3 HOH HOH 306 B HOH 307 3 HOH HOH 307 B HOH 308 3 HOH HOH 308 B HOH 309 3 HOH HOH 309 B HOH 311 3 HOH HOH 311 B HOH 313 3 HOH HOH 313 B HOH 315 3 HOH HOH 315 B HOH 317 3 HOH HOH 317 B HOH 320 3 HOH HOH 320 B HOH 321 3 HOH HOH 321 B HOH 325 3 HOH HOH 325 B HOH 326 3 HOH HOH 326 B HOH 331 3 HOH HOH 331 B HOH 333 3 HOH HOH 333 B HOH 334 3 HOH HOH 334 B HOH 335 3 HOH HOH 335 B HOH 338 3 HOH HOH 338 B HOH 342 3 HOH HOH 342 B HOH 347 3 HOH HOH 347 B HOH 348 3 HOH HOH 348 B HOH 349 3 HOH HOH 349 B HOH 350 3 HOH HOH 350 B HOH 351 3 HOH HOH 351 B HOH 352 3 HOH HOH 352 B HOH 355 3 HOH HOH 355 B HOH 359 3 HOH HOH 359 B HOH 361 3 HOH HOH 361 B HOH 367 3 HOH HOH 367 B HOH 368 3 HOH HOH 368 B HOH 369 3 HOH HOH 369 B HOH 370 3 HOH HOH 370 B HOH 375 3 HOH HOH 375 B HOH 376 3 HOH HOH 376 B HOH 377 3 HOH HOH 377 B HOH 378 3 HOH HOH 378 B HOH 379 3 HOH HOH 379 B HOH 381 3 HOH HOH 381 B HOH 382 3 HOH HOH 382 B HOH 383 3 HOH HOH 383 B HOH 385 3 HOH HOH 385 B HOH 389 3 HOH HOH 389 B HOH 391 3 HOH HOH 391 B HOH 397 3 HOH HOH 397 B HOH 398 3 HOH HOH 398 B HOH 399 3 HOH HOH 399 B HOH 402 3 HOH HOH 402 B HOH 403 3 HOH HOH 403 B HOH 406 3 HOH HOH 406 B HOH 412 3 HOH HOH 412 B HOH 415 3 HOH HOH 415 B HOH 416 3 HOH HOH 416 B HOH 418 3 HOH HOH 418 B HOH 419 3 HOH HOH 419 B HOH 420 3 HOH HOH 420 B HOH 423 3 HOH HOH 423 B HOH 424 3 HOH HOH 424 B HOH 425 3 HOH HOH 425 B HOH 430 3 HOH HOH 430 B HOH 434 3 HOH HOH 434 B HOH 436 3 HOH HOH 436 B HOH 437 3 HOH HOH 437 B HOH 439 3 HOH HOH 439 B HOH 440 3 HOH HOH 440 B HOH 442 3 HOH HOH 442 B HOH 443 3 HOH HOH 443 B HOH 444 3 HOH HOH 444 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A VAL 3 n 3 VAL 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ALA 41 n 41 ALA 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B VAL 3 n 3 VAL 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ALA 41 n 41 ALA 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B ALA 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5320 -36 8900 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A O LYS 14 A O LYS 14 A N GLU 65 A N GLU 65 A O ILE 62 A O ILE 62 A N GLY 73 A N GLY 73 A O LYS 43 A O LYS 43 A N GLN 58 A N GLN 58 A O ARG 57 A O ARG 57 A N VAL 77 A N VAL 77 B O GLN 18 B O GLN 18 B N ILE 15 B N ILE 15 B O LYS 14 B O LYS 14 B N GLU 65 B N GLU 65 B O ILE 62 B O ILE 62 B N GLY 73 B N GLY 73 B O LYS 43 B O LYS 43 B N GLN 58 B N GLN 58 B O ARG 57 B O ARG 57 B N VAL 77 B N VAL 77 1 B CG MET 46 B CG MET 46 1 Y 1 B SD MET 46 B SD MET 46 1 Y 1 B CE MET 46 B CE MET 46 1 Y 1 B B O O ILE HOH 50 367 2.19 1 -13.96 1.90 110.20 96.24 A A A CB CA C LEU LEU LEU 10 10 10 N 1 -17.00 2.20 111.50 94.50 A A A N CA CB VAL VAL VAL 11 11 11 N 1 -16.74 2.00 111.60 94.86 A A A CB CA C ILE ILE ILE 15 15 15 N 1 -13.62 2.20 113.40 99.78 A A A CA CB CG LYS LYS LYS 20 20 20 N 1 7.95 0.90 118.30 126.25 A A A CB CG OD1 ASP ASP ASP 25 25 25 N 1 -7.42 0.90 118.30 110.88 A A A CB CG OD2 ASP ASP ASP 29 29 29 N 1 23.58 2.70 114.20 137.78 A A A CB CG CD GLU GLU GLU 34 34 34 N 1 -11.76 1.20 123.30 111.54 A A A OE1 CD OE2 GLU GLU GLU 34 34 34 N 1 11.63 1.20 123.30 134.93 A A A OE1 CD OE2 GLU GLU GLU 65 65 65 N 1 -12.43 2.00 110.40 97.97 A A A CB CA C HIS HIS HIS 69 69 69 N 1 -16.07 1.90 111.40 95.33 A A A CB CA C VAL VAL VAL 82 82 82 N 1 -4.34 0.50 120.30 115.96 A A A NE CZ NH2 ARG ARG ARG 87 87 87 N 1 -14.04 1.80 110.60 96.56 A A A N CA CB CYS CYS CYS 95 95 95 N 1 11.55 1.90 110.30 121.85 B B B N CA CB THR THR THR 4 4 4 N 1 3.80 0.50 120.30 124.10 B B B NE CZ NH1 ARG ARG ARG 8 8 8 N 1 -13.69 2.20 111.50 97.81 B B B N CA CB VAL VAL VAL 11 11 11 N 1 -16.81 2.00 111.60 94.79 B B B CB CA C ILE ILE ILE 15 15 15 N 1 14.69 2.20 113.40 128.09 B B B CA CB CG GLU GLU GLU 21 21 21 N 1 5.49 0.90 118.30 123.79 B B B CB CG OD1 ASP ASP ASP 25 25 25 N 1 6.14 0.90 118.30 124.44 B B B CB CG OD2 ASP ASP ASP 29 29 29 N 1 -9.08 1.20 123.30 114.22 B B B OE1 CD OE2 GLU GLU GLU 34 34 34 N 1 14.10 2.20 113.40 127.50 B B B CA CB CG LYS LYS LYS 43 43 43 N 1 21.10 2.30 110.80 131.90 B B B N CA CB ILE ILE ILE 54 54 54 N 1 -13.46 1.90 111.40 97.94 B B B CB CA C VAL VAL VAL 82 82 82 N 1 -3.51 0.50 120.30 116.79 B B B NE CZ NH2 ARG ARG ARG 87 87 87 N 1 -12.24 2.00 110.40 98.16 B B B N CA CB LEU LEU LEU 97 97 97 N 1 A GLU 34 -49.63 169.58 1 A SER 37 -66.96 96.72 1 A PRO 79 -87.04 43.08 1 B PHE 53 -103.44 -164.89 1 B PRO 79 -53.74 47.57 0.167 2.0 8.0 11058 1 3. RIGID BODY REFINEMENT PDB ENTRY 1ODX 2.0 8.0 145 1710 58 0 1507 0.021 0.020 0.055 0.035 0.062 0.050 1.514 1.500 2.455 2.000 3.863 3.000 5.638 4.000 0.016 0.022 0.221 0.130 0.231 0.300 0.239 0.300 0.232 0.300 3.0 3.0 21.4 10.0 14.9 20.0 2.0 20.0 1ODY 12082 1.0 0.067 1 4.7 95.0 0.429 2.00 2.07 85.1 model building X-PLOR refinement PROFFT refinement X-PLOR data reduction DENZO data scaling SCALEPACK phasing X-PLOR HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130 1 N N 1 N N 2 N N 3 N N 3 N N A ARG 87 A ARG 87 HELX_P A LEU 90 A LEU 90 1 1 4 B ARG 87 B ARG 87 HELX_P B LEU 90 B LEU 90 1 2 4 ASPARTIC PROTEASE ASPARTIC PROTEASE, RETROPEPSIN, RETROVIRUS, HIV, AIDS S63716 PIR 1 1 S63716 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 1 99 1ODY 1 99 S63716 A 1 1 99 1 99 1ODY 1 99 S63716 B 1 1 99 1 ARG conflict ALA 41 1ODY A S63716 PIR 41 41 2 ARG conflict ALA 41 1ODY B S63716 PIR 41 41 2 MET conflict MET 46 1ODY B S63716 PIR 46 46 4 3 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 18 A GLN 18 A LEU 23 A LEU 23 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A ILE 62 A ILE 62 A ILE 66 A ILE 66 A LYS 70 A LYS 70 A GLY 73 A GLY 73 A LYS 43 A LYS 43 A GLY 48 A GLY 48 A PHE 53 A PHE 53 A TYR 59 A TYR 59 A VAL 75 A VAL 75 A GLY 78 A GLY 78 B GLN 18 B GLN 18 B LEU 23 B LEU 23 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B ILE 62 B ILE 62 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B GLY 73 B GLY 73 B LYS 43 B LYS 43 B GLY 48 B GLY 48 B PHE 53 B PHE 53 B TYR 59 B TYR 59 B VAL 75 B VAL 75 B GLY 78 B GLY 78 BINDING SITE FOR RESIDUE LP1 A 201 A LP1 201 Software 22 A ARG 8 A ARG 8 22 1_555 A ASP 25 A ASP 25 22 1_555 A GLY 27 A GLY 27 22 1_555 A ALA 28 A ALA 28 22 1_555 A ASP 29 A ASP 29 22 1_555 A ILE 47 A ILE 47 22 1_555 A GLY 48 A GLY 48 22 1_555 A GLY 49 A GLY 49 22 1_555 A ILE 50 A ILE 50 22 1_555 A PRO 81 A PRO 81 22 1_555 A VAL 82 A VAL 82 22 1_555 A ILE 84 A ILE 84 22 1_555 A HOH 301 D HOH 22 1_555 B ASP 25 B ASP 25 22 1_555 B GLY 27 B GLY 27 22 1_555 B ALA 28 B ALA 28 22 1_555 B ASP 29 B ASP 29 22 1_555 B ILE 47 B ILE 47 22 1_555 B GLY 48 B GLY 48 22 1_555 B GLY 49 B GLY 49 22 1_555 B VAL 82 B VAL 82 22 1_555 B HOH 440 E HOH 22 1_555 169 P 61