0.024784 0.000000 0.013084 0.000000 0.015490 0.000000 0.000000 0.000000 0.027249 0.00000 0.00000 0.00000 David, G. Blondeau, K. Renouard, M. Penel, S. Lewit-Bentley, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 117.83 90.00 40.348 64.558 41.499 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NI N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 278 43728 10.1074/JBC.M304484200 12909634 Yoda from Escherichia Coli is a Metal-Binding, Lipocalin-Like Protein 2003 10.2210/pdb1oej/pdb pdb_00001oej 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS CCD 2001-02-15 MARRESEARCH SI 111 SINGLE WAVELENGTH M x-ray 1 1.3 1.0 PX9.5 SRS 1.3 SYNCHROTRON SRS BEAMLINE PX9.5 22373.879 HYPOTHETICAL PROTEIN YODA 1 nat polymer 58.693 NICKEL (II) ION 1 syn non-polymer 18.015 water 101 nat water no no HGHHSHGKPLTEVEQKAANGVFDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYAT DIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFMGN DSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH HGHHSHGKPLTEVEQKAANGVFDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYAT DIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFMGN DSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 562 ESCHERICHIA COLI 1 2.17 43 6.50 10 MG/ML PROTEIN, 30% PEG 10000, 100 MM SODIUM CACODYLATE, PH = 6.5 200 MM SODIUM ACETATE chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description 1 0 2003-08-15 1 1 2011-05-08 1 2 2011-07-13 1 3 2023-12-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id YODA FROM ESCHERICHIA COLI CRYSTALLISED WITH CADMIUM IONS YODA FROM ESCHERICHIA COLI CRYSTALLISED WITH ZINC IONS PDBE Y PDBE 2003-03-27 REL REL NI NICKEL (II) ION HOH water THE SEQUENCE: MAIRLYKLAVALGVFIVSAPAFS THAT IS INCLUDED THE SWISPROT RECORD UPSTREAM OF THE SEQUENCE CRYSTALLISED, CORRESPONDS TO A SIGNAL SEQUENCE THAT IS CLEAVED IN THE MATURE PROTEIN. 1OEE PDB ENTRY 1OEE PDB experimental model NI 1194 2 NI NI 1194 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2100 3 HOH HOH 2100 A HOH 2101 3 HOH HOH 2101 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A GLY 7 n 7 GLY 7 A LYS 8 n 8 LYS 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A THR 11 n 11 THR 11 A GLU 12 n 12 GLU 12 A VAL 13 n 13 VAL 13 A GLU 14 n 14 GLU 14 A GLN 15 n 15 GLN 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A ALA 18 n 18 ALA 18 A ASN 19 n 19 ASN 19 A GLY 20 n 20 GLY 20 A VAL 21 n 21 VAL 21 A PHE 22 n 22 PHE 22 A ASP 23 n 23 ASP 23 A ASP 24 n 24 ASP 24 A ALA 25 n 25 ALA 25 A ASN 26 n 26 ASN 26 A VAL 27 n 27 VAL 27 A GLN 28 n 28 GLN 28 A ASN 29 n 29 ASN 29 A ARG 30 n 30 ARG 30 A THR 31 n 31 THR 31 A LEU 32 n 32 LEU 32 A SER 33 n 33 SER 33 A ASP 34 n 34 ASP 34 A TRP 35 n 35 TRP 35 A ASP 36 n 36 ASP 36 A GLY 37 n 37 GLY 37 A VAL 38 n 38 VAL 38 A TRP 39 n 39 TRP 39 A GLN 40 n 40 GLN 40 A SER 41 n 41 SER 41 A VAL 42 n 42 VAL 42 A TYR 43 n 43 TYR 43 A PRO 44 n 44 PRO 44 A LEU 45 n 45 LEU 45 A LEU 46 n 46 LEU 46 A GLN 47 n 47 GLN 47 A SER 48 n 48 SER 48 A GLY 49 n 49 GLY 49 A LYS 50 n 50 LYS 50 A LEU 51 n 51 LEU 51 A ASP 52 n 52 ASP 52 A PRO 53 n 53 PRO 53 A VAL 54 n 54 VAL 54 A PHE 55 n 55 PHE 55 A GLN 56 n 56 GLN 56 A LYS 57 n 57 LYS 57 A LYS 58 n 58 LYS 58 A ALA 59 n 59 ALA 59 A ASP 60 n 60 ASP 60 A ALA 61 n 61 ALA 61 A ASP 62 n 62 ASP 62 A LYS 63 n 63 LYS 63 A THR 64 n 64 THR 64 A LYS 65 n 65 LYS 65 A THR 66 n 66 THR 66 A PHE 67 n 67 PHE 67 A ALA 68 n 68 ALA 68 A GLU 69 n 69 GLU 69 A ILE 70 n 70 ILE 70 A LYS 71 n 71 LYS 71 A ASP 72 n 72 ASP 72 A TYR 73 n 73 TYR 73 A TYR 74 n 74 TYR 74 A HIS 75 n 75 HIS 75 A LYS 76 n 76 LYS 76 A GLY 77 n 77 GLY 77 A TYR 78 n 78 TYR 78 A ALA 79 n 79 ALA 79 A THR 80 n 80 THR 80 A ASP 81 n 81 ASP 81 A ILE 82 n 82 ILE 82 A GLU 83 n 83 GLU 83 A MET 84 n 84 MET 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ILE 87 n 87 ILE 87 A GLU 88 n 88 GLU 88 A ASP 89 n 89 ASP 89 A GLY 90 n 90 GLY 90 A ILE 91 n 91 ILE 91 A VAL 92 n 92 VAL 92 A GLU 93 n 93 GLU 93 A PHE 94 n 94 PHE 94 A HIS 95 n 95 HIS 95 A ARG 96 n 96 ARG 96 A ASN 97 n 97 ASN 97 A ASN 98 n 98 ASN 98 A GLU 99 n 99 GLU 99 A THR 100 n 100 THR 100 A THR 101 n 101 THR 101 A SER 102 n 102 SER 102 A CYS 103 n 103 CYS 103 A LYS 104 n 104 LYS 104 A TYR 105 n 105 TYR 105 A ASP 106 n 106 ASP 106 A TYR 107 n 107 TYR 107 A ASP 108 n 108 ASP 108 A GLY 109 n 109 GLY 109 A TYR 110 n 110 TYR 110 A LYS 111 n 111 LYS 111 A ILE 112 n 112 ILE 112 A LEU 113 n 113 LEU 113 A THR 114 n 114 THR 114 A TYR 115 n 115 TYR 115 A LYS 116 n 116 LYS 116 A SER 117 n 117 SER 117 A GLY 118 n 118 GLY 118 A LYS 119 n 119 LYS 119 A LYS 120 n 120 LYS 120 A GLY 121 n 121 GLY 121 A VAL 122 n 122 VAL 122 A ARG 123 n 123 ARG 123 A TYR 124 n 124 TYR 124 A LEU 125 n 125 LEU 125 A PHE 126 n 126 PHE 126 A GLU 127 n 127 GLU 127 A CYS 128 n 128 CYS 128 A LYS 129 n 129 LYS 129 A ASP 130 n 130 ASP 130 A PRO 131 n 131 PRO 131 A GLU 132 n 132 GLU 132 A SER 133 n 133 SER 133 A LYS 134 n 134 LYS 134 A ALA 135 n 135 ALA 135 A PRO 136 n 136 PRO 136 A LYS 137 n 137 LYS 137 A TYR 138 n 138 TYR 138 A ILE 139 n 139 ILE 139 A GLN 140 n 140 GLN 140 A PHE 141 n 141 PHE 141 A SER 142 n 142 SER 142 A ASP 143 n 143 ASP 143 A HIS 144 n 144 HIS 144 A ILE 145 n 145 ILE 145 A ILE 146 n 146 ILE 146 A ALA 147 n 147 ALA 147 A PRO 148 n 148 PRO 148 A ARG 149 n 149 ARG 149 A LYS 150 n 150 LYS 150 A SER 151 n 151 SER 151 A SER 152 n 152 SER 152 A HIS 153 n 153 HIS 153 A PHE 154 n 154 PHE 154 A HIS 155 n 155 HIS 155 A ILE 156 n 156 ILE 156 A PHE 157 n 157 PHE 157 A MET 158 n 158 MET 158 A GLY 159 n 159 GLY 159 A ASN 160 n 160 ASN 160 A ASP 161 n 161 ASP 161 A SER 162 n 162 SER 162 A GLN 163 n 163 GLN 163 A GLN 164 n 164 GLN 164 A SER 165 n 165 SER 165 A LEU 166 n 166 LEU 166 A LEU 167 n 167 LEU 167 A ASN 168 n 168 ASN 168 A GLU 169 n 169 GLU 169 A MET 170 n 170 MET 170 A GLU 171 n 171 GLU 171 A ASN 172 n 172 ASN 172 A TRP 173 n 173 TRP 173 A PRO 174 n 174 PRO 174 A THR 175 n 175 THR 175 A TYR 176 n 176 TYR 176 A TYR 177 n 177 TYR 177 A PRO 178 n 178 PRO 178 A TYR 179 n 179 TYR 179 A GLN 180 n 180 GLN 180 A LEU 181 n 181 LEU 181 A SER 182 n 182 SER 182 A SER 183 n 183 SER 183 A GLU 184 n 184 GLU 184 A GLU 185 n 185 GLU 185 A VAL 186 n 186 VAL 186 A VAL 187 n 187 VAL 187 A GLU 188 n 188 GLU 188 A GLU 189 n 189 GLU 189 A MET 190 n 190 MET 190 A MET 191 n 191 MET 191 A SER 192 n 192 SER 192 A HIS 193 n 193 HIS 193 A author_and_software_defined_assembly PQS 1 monomeric A HIS 144 A NE2 HIS 144 1_555 A NI 1194 B NI NI 1_555 A HIS 153 A NE2 HIS 153 1_555 99.9 A HIS 144 A NE2 HIS 144 1_555 A NI 1194 B NI NI 1_555 A HIS 155 A NE2 HIS 155 1_555 102.2 A HIS 153 A NE2 HIS 153 1_555 A NI 1194 B NI NI 1_555 A HIS 155 A NE2 HIS 155 1_555 109.8 A HIS 144 A NE2 HIS 144 1_555 A NI 1194 B NI NI 1_555 A HOH 2091 C O HOH 1_555 127.1 A HIS 153 A NE2 HIS 153 1_555 A NI 1194 B NI NI 1_555 A HOH 2091 C O HOH 1_555 118.8 A HIS 155 A NE2 HIS 155 1_555 A NI 1194 B NI NI 1_555 A HOH 2091 C O HOH 1_555 97.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 103 A N CYS 103 A O VAL 92 A O VAL 92 A N HIS 95 A N HIS 95 A O MET 84 A O MET 84 A N ILE 87 A N ILE 87 A O GLY 37 A O GLY 37 A N GLN 40 A N GLN 40 A O TYR 177 A O TYR 177 A N TYR 176 A N TYR 176 A O PHE 154 A O PHE 154 A N GLY 159 A N GLY 159 A O TYR 138 A O TYR 138 A N PHE 141 A N PHE 141 A O TYR 124 A O TYR 124 A N GLU 127 A N GLU 127 A O ASP 106 A O ASP 106 1 A HIS 1 A HIS 1 1 Y 1 A GLY 2 A GLY 2 1 Y 1 A HIS 3 A HIS 3 1 Y 1 A HIS 4 A HIS 4 1 Y 1 A SER 5 A SER 5 1 Y 1 A HIS 6 A HIS 6 1 Y 1 7.04 0.90 118.30 125.34 A A A CB CG OD2 ASP ASP ASP 34 34 34 N 1 6.21 0.90 118.30 124.51 A A A CB CG OD2 ASP ASP ASP 161 161 161 N 1 A ASN 97 -39.92 92.65 1 A ASN 98 73.11 -12.17 1 A ASP 143 -150.85 30.96 1 A HIS 144 59.69 19.89 1 A ARG 149 179.56 135.47 1 A ASP 161 -91.12 -64.93 1 A SER 192 -110.94 -103.77 27.508 -0.45 0.00 -0.52 0.83 0.00 -0.87 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE FIRST 6 RESIDUES AT THE N-TERMINUS ARE DISORDERED 0.25226 0.180 0.18371 1.81 36.76 653 12128 5.1 74.27 4.702 0.138 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.199 0.189 PDB ENTRY 1OEE 1.81 36.76 101 1628 1 0 1526 20.107 1.810 14.920 1OEJ 6027 0.06000 1 10.5000 1.600 74.5 0.58800 1.81 1.91 1.600 1 1.60 69.7 data reduction MOSFLM data scaling SCALA phasing AMoRE phasing CCP4 refinement REFMAC YodA from Escherichia coli crystallised with no added ions 1 N N 2 N N 3 N N A THR 11 A THR 11 HELX_P A ASN 19 A ASN 19 1 1 9 A ASP 23 A ASP 23 HELX_P A VAL 27 A VAL 27 5 2 5 A THR 31 A THR 31 HELX_P A ASP 36 A ASP 36 5 3 6 A VAL 42 A VAL 42 HELX_P A SER 48 A SER 48 1 4 7 A LEU 51 A LEU 51 HELX_P A ASP 62 A ASP 62 1 5 12 A THR 66 A THR 66 HELX_P A ALA 79 A ALA 79 1 6 14 A SER 162 A SER 162 HELX_P A GLU 169 A GLU 169 1 7 8 A SER 182 A SER 182 HELX_P A SER 192 A SER 192 1 8 11 disulf 2.002 A CYS 103 A SG CYS 103 1_555 A CYS 128 A SG CYS 128 1_555 metalc 2.256 A HIS 144 A NE2 HIS 144 1_555 A NI 1194 B NI NI 1_555 metalc 2.256 A HIS 153 A NE2 HIS 153 1_555 A NI 1194 B NI NI 1_555 metalc 2.160 A HIS 155 A NE2 HIS 155 1_555 A NI 1194 B NI NI 1_555 metalc 2.501 A NI 1194 B NI NI 1_555 A HOH 2091 C O HOH 1_555 STRESS PROTEIN/LIPOCALIN STRESS PROTEIN/LIPOCALIN, STRESS PROTEIN, LIPOCALIN, YODA, STRESS PROTEIN-LIPOCALIN complex YODA_ECOLI UNP 1 P76344 24 216 1OEJ 1 193 P76344 A 1 1 193 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 99 A GLU 99 A LYS 104 A LYS 104 A ILE 91 A ILE 91 A ARG 96 A ARG 96 A MET 84 A MET 84 A GLU 88 A GLU 88 A GLY 37 A GLY 37 A SER 41 A SER 41 A THR 175 A THR 175 A PRO 178 A PRO 178 A PHE 154 A PHE 154 A GLY 159 A GLY 159 A TYR 138 A TYR 138 A SER 142 A SER 142 A LYS 120 A LYS 120 A GLU 127 A GLU 127 A ASP 106 A ASP 106 A THR 114 A THR 114 BINDING SITE FOR RESIDUE NI A1194 Software 4 A HIS 144 A HIS 144 4 1_555 A HIS 153 A HIS 153 4 1_555 A HIS 155 A HIS 155 4 1_555 A HOH 2091 C HOH 4 1_555 4 P 1 21 1