0.013564
0.000000
0.000000
0.000000
0.013564
0.000000
0.000000
0.000000
0.007990
0.00000
0.00000
0.00000
Pasqualato, S.
Senic-Matuglia, F.
Renault, L.
Goud, B.
Salamero, J.
Cherfils, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
73.726
73.726
125.152
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O13 P3 S
539.246
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
P
N
124
N
O
N
125
N
S
N
126
N
O
N
127
N
O
N
128
S
P
N
129
N
O
N
130
N
O
N
131
S
P
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
C
N
137
R
C
N
138
N
O
N
139
S
C
N
140
N
O
N
141
R
C
N
142
N
O
N
143
R
C
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
C
N
152
N
N
N
153
N
N
Y
154
N
C
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
MG
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
279
11480
10.1074/JBC.M310558200
14699104
The Structural Gdp/GTP Cycle of Rab11 Reveals a Novel Interface Involved in the Dynamics of Recycling Endosomes
2004
10.2210/pdb1oiw/pdb
pdb_00001oiw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
2002-05-17
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-2
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-2
DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES
21525.260
RAS-RELATED PROTEIN RAB-11A
RESIDUES 1-173
YES
1
man
polymer
539.246
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
79
nat
water
RAB-11,24KG, YL8, RAB11A
no
no
MRGSHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA
QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF
AEKNGLSFIETSALDSTNVEAAFQTILTEIY
MRGSHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA
QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF
AEKNGLSFIETSALDSTNVEAAFQTILTEIY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
1
1.98
37.73
6.50
1.4 M NACL, 0.15 M NAH2PO4, 0.15 M KH2PO4,0.1 M NAMES PH6.5, pH 6.50
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2004-01-08
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
X-RAY STRUCTURE OF THE SMALL G PROTEIN RAB11A IN COMPLEX WITH GDP
X-RAY STRUCTURE OF THE SMALL G PROTEIN RAB11A IN COMPLEX WITH GDP AND PI
PDBE
Y
PDBE
2003-06-26
REL
REL
1
A
O
HOH
2010
6.84
GSP
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
MG
MAGNESIUM ION
HOH
water
ENGINEERED MUTATION GLN 70 LEU IN CHAIN A
1OIV
PDB ENTRY 1OIV
PDB
experimental model
GSP
1174
2
GSP
GSP
1174
A
MG
1175
3
MG
MG
1175
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
n
1
-18
A
n
2
-17
A
n
3
-16
A
n
4
-15
A
n
5
-14
A
n
6
-13
A
n
7
-12
A
n
8
-11
A
n
9
-10
A
n
10
-9
A
n
11
-8
A
n
12
-7
A
n
13
-6
A
n
14
-5
A
n
15
-4
A
n
16
-3
A
n
17
-2
A
n
18
-1
A
n
19
1
A
n
20
2
A
n
21
3
A
n
22
4
A
n
23
5
A
n
24
6
A
n
25
7
A
TYR
8
n
26
TYR
8
A
ASP
9
n
27
ASP
9
A
TYR
10
n
28
TYR
10
A
LEU
11
n
29
LEU
11
A
PHE
12
n
30
PHE
12
A
LYS
13
n
31
LYS
13
A
VAL
14
n
32
VAL
14
A
VAL
15
n
33
VAL
15
A
LEU
16
n
34
LEU
16
A
ILE
17
n
35
ILE
17
A
GLY
18
n
36
GLY
18
A
ASP
19
n
37
ASP
19
A
SER
20
n
38
SER
20
A
GLY
21
n
39
GLY
21
A
VAL
22
n
40
VAL
22
A
GLY
23
n
41
GLY
23
A
LYS
24
n
42
LYS
24
A
SER
25
n
43
SER
25
A
ASN
26
n
44
ASN
26
A
LEU
27
n
45
LEU
27
A
LEU
28
n
46
LEU
28
A
SER
29
n
47
SER
29
A
ARG
30
n
48
ARG
30
A
PHE
31
n
49
PHE
31
A
THR
32
n
50
THR
32
A
ARG
33
n
51
ARG
33
A
ASN
34
n
52
ASN
34
A
GLU
35
n
53
GLU
35
A
PHE
36
n
54
PHE
36
A
ASN
37
n
55
ASN
37
A
LEU
38
n
56
LEU
38
A
GLU
39
n
57
GLU
39
A
SER
40
n
58
SER
40
A
LYS
41
n
59
LYS
41
A
SER
42
n
60
SER
42
A
THR
43
n
61
THR
43
A
ILE
44
n
62
ILE
44
A
GLY
45
n
63
GLY
45
A
VAL
46
n
64
VAL
46
A
GLU
47
n
65
GLU
47
A
PHE
48
n
66
PHE
48
A
ALA
49
n
67
ALA
49
A
THR
50
n
68
THR
50
A
ARG
51
n
69
ARG
51
A
SER
52
n
70
SER
52
A
ILE
53
n
71
ILE
53
A
GLN
54
n
72
GLN
54
A
VAL
55
n
73
VAL
55
A
ASP
56
n
74
ASP
56
A
GLY
57
n
75
GLY
57
A
LYS
58
n
76
LYS
58
A
THR
59
n
77
THR
59
A
ILE
60
n
78
ILE
60
A
LYS
61
n
79
LYS
61
A
ALA
62
n
80
ALA
62
A
GLN
63
n
81
GLN
63
A
ILE
64
n
82
ILE
64
A
TRP
65
n
83
TRP
65
A
ASP
66
n
84
ASP
66
A
THR
67
n
85
THR
67
A
ALA
68
n
86
ALA
68
A
GLY
69
n
87
GLY
69
A
LEU
70
n
88
LEU
70
A
GLU
71
n
89
GLU
71
A
ARG
72
n
90
ARG
72
A
TYR
73
n
91
TYR
73
A
ARG
74
n
92
ARG
74
A
ALA
75
n
93
ALA
75
A
ILE
76
n
94
ILE
76
A
THR
77
n
95
THR
77
A
SER
78
n
96
SER
78
A
ALA
79
n
97
ALA
79
A
TYR
80
n
98
TYR
80
A
TYR
81
n
99
TYR
81
A
ARG
82
n
100
ARG
82
A
GLY
83
n
101
GLY
83
A
ALA
84
n
102
ALA
84
A
VAL
85
n
103
VAL
85
A
GLY
86
n
104
GLY
86
A
ALA
87
n
105
ALA
87
A
LEU
88
n
106
LEU
88
A
LEU
89
n
107
LEU
89
A
VAL
90
n
108
VAL
90
A
TYR
91
n
109
TYR
91
A
ASP
92
n
110
ASP
92
A
ILE
93
n
111
ILE
93
A
ALA
94
n
112
ALA
94
A
LYS
95
n
113
LYS
95
A
HIS
96
n
114
HIS
96
A
LEU
97
n
115
LEU
97
A
THR
98
n
116
THR
98
A
TYR
99
n
117
TYR
99
A
GLU
100
n
118
GLU
100
A
ASN
101
n
119
ASN
101
A
VAL
102
n
120
VAL
102
A
GLU
103
n
121
GLU
103
A
ARG
104
n
122
ARG
104
A
TRP
105
n
123
TRP
105
A
LEU
106
n
124
LEU
106
A
LYS
107
n
125
LYS
107
A
GLU
108
n
126
GLU
108
A
LEU
109
n
127
LEU
109
A
ARG
110
n
128
ARG
110
A
ASP
111
n
129
ASP
111
A
HIS
112
n
130
HIS
112
A
ALA
113
n
131
ALA
113
A
ASP
114
n
132
ASP
114
A
SER
115
n
133
SER
115
A
ASN
116
n
134
ASN
116
A
ILE
117
n
135
ILE
117
A
VAL
118
n
136
VAL
118
A
ILE
119
n
137
ILE
119
A
MET
120
n
138
MET
120
A
LEU
121
n
139
LEU
121
A
VAL
122
n
140
VAL
122
A
GLY
123
n
141
GLY
123
A
ASN
124
n
142
ASN
124
A
LYS
125
n
143
LYS
125
A
SER
126
n
144
SER
126
A
ASP
127
n
145
ASP
127
A
LEU
128
n
146
LEU
128
A
ARG
129
n
147
ARG
129
A
HIS
130
n
148
HIS
130
A
LEU
131
n
149
LEU
131
A
ARG
132
n
150
ARG
132
A
ALA
133
n
151
ALA
133
A
VAL
134
n
152
VAL
134
A
PRO
135
n
153
PRO
135
A
THR
136
n
154
THR
136
A
ASP
137
n
155
ASP
137
A
GLU
138
n
156
GLU
138
A
ALA
139
n
157
ALA
139
A
ARG
140
n
158
ARG
140
A
ALA
141
n
159
ALA
141
A
PHE
142
n
160
PHE
142
A
ALA
143
n
161
ALA
143
A
GLU
144
n
162
GLU
144
A
LYS
145
n
163
LYS
145
A
ASN
146
n
164
ASN
146
A
GLY
147
n
165
GLY
147
A
LEU
148
n
166
LEU
148
A
SER
149
n
167
SER
149
A
PHE
150
n
168
PHE
150
A
ILE
151
n
169
ILE
151
A
GLU
152
n
170
GLU
152
A
THR
153
n
171
THR
153
A
SER
154
n
172
SER
154
A
ALA
155
n
173
ALA
155
A
LEU
156
n
174
LEU
156
A
ASP
157
n
175
ASP
157
A
SER
158
n
176
SER
158
A
THR
159
n
177
THR
159
A
ASN
160
n
178
ASN
160
A
VAL
161
n
179
VAL
161
A
GLU
162
n
180
GLU
162
A
ALA
163
n
181
ALA
163
A
ALA
164
n
182
ALA
164
A
PHE
165
n
183
PHE
165
A
GLN
166
n
184
GLN
166
A
THR
167
n
185
THR
167
A
ILE
168
n
186
ILE
168
A
LEU
169
n
187
LEU
169
A
THR
170
n
188
THR
170
A
GLU
171
n
189
GLU
171
A
ILE
172
n
190
ILE
172
A
TYR
173
n
191
TYR
173
A
author_and_software_defined_assembly
PQS
1
monomeric
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
A
THR
43
A
OG1
THR
61
1_555
80.2
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
A
GSP
1174
B
O2G
GSP
1_555
170.8
A
THR
43
A
OG1
THR
61
1_555
A
MG
1175
C
MG
MG
1_555
A
GSP
1174
B
O2G
GSP
1_555
93.9
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
A
GSP
1174
B
O2B
GSP
1_555
88.7
A
THR
43
A
OG1
THR
61
1_555
A
MG
1175
C
MG
MG
1_555
A
GSP
1174
B
O2B
GSP
1_555
168.7
A
GSP
1174
B
O2G
GSP
1_555
A
MG
1175
C
MG
MG
1_555
A
GSP
1174
B
O2B
GSP
1_555
96.9
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2030
D
O
HOH
1_555
96.5
A
THR
43
A
OG1
THR
61
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2030
D
O
HOH
1_555
88.8
A
GSP
1174
B
O2G
GSP
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2030
D
O
HOH
1_555
90.4
A
GSP
1174
B
O2B
GSP
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2030
D
O
HOH
1_555
94.2
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
88.8
A
THR
43
A
OG1
THR
61
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
93.9
A
GSP
1174
B
O2G
GSP
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
84.5
A
GSP
1174
B
O2B
GSP
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
84.1
A
HOH
2030
D
O
HOH
1_555
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
174.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
55
A
N
VAL
73
A
O
LYS
58
A
O
LYS
76
A
N
LYS
61
A
N
LYS
79
A
O
TYR
10
A
O
TYR
28
A
N
VAL
15
A
N
VAL
33
A
O
GLY
86
A
O
GLY
104
A
N
ALA
87
A
N
ALA
105
A
O
VAL
118
A
O
VAL
136
A
N
LEU
121
A
N
LEU
139
A
O
SER
149
A
O
SER
167
1
A
HOH
2016
D
HOH
1
A
HOH
2020
D
HOH
1
A
HOH
2031
D
HOH
1
A
HOH
2063
D
HOH
1
A
HOH
2073
D
HOH
1
A
CG
GLU
39
A
CG
GLU
57
1
Y
1
A
CD
GLU
39
A
CD
GLU
57
1
Y
1
A
OE1
GLU
39
A
OE1
GLU
57
1
Y
1
A
OE2
GLU
39
A
OE2
GLU
57
1
Y
1
A
CG
LYS
41
A
CG
LYS
59
1
Y
1
A
CD
LYS
41
A
CD
LYS
59
1
Y
1
A
CE
LYS
41
A
CE
LYS
59
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
59
1
Y
1
A
MET
-18
A
MET
1
1
Y
1
A
ARG
-17
A
ARG
2
1
Y
1
A
GLY
-16
A
GLY
3
1
Y
1
A
SER
-15
A
SER
4
1
Y
1
A
HIS
-14
A
HIS
5
1
Y
1
A
HIS
-13
A
HIS
6
1
Y
1
A
HIS
-12
A
HIS
7
1
Y
1
A
HIS
-11
A
HIS
8
1
Y
1
A
HIS
-10
A
HIS
9
1
Y
1
A
HIS
-9
A
HIS
10
1
Y
1
A
GLY
-8
A
GLY
11
1
Y
1
A
ILE
-7
A
ILE
12
1
Y
1
A
PRO
-6
A
PRO
13
1
Y
1
A
LEU
-5
A
LEU
14
1
Y
1
A
PRO
-4
A
PRO
15
1
Y
1
A
GLY
-3
A
GLY
16
1
Y
1
A
ARG
-2
A
ARG
17
1
Y
1
A
ALA
-1
A
ALA
18
1
Y
1
A
MET
1
A
MET
19
1
Y
1
A
GLY
2
A
GLY
20
1
Y
1
A
THR
3
A
THR
21
1
Y
1
A
ARG
4
A
ARG
22
1
Y
1
A
ASP
5
A
ASP
23
1
Y
1
A
ASP
6
A
ASP
24
1
Y
1
A
GLU
7
A
GLU
25
1
Y
1
A
A
ND2
O
ASN
HOH
116
2065
2.15
1
A
ARG
33
0.243
SIDE CHAIN
1
12.93
2.10
111.80
124.73
A
A
A
CG
CD
NE
ARG
ARG
ARG
33
33
33
N
1
4.79
0.50
120.30
125.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
33
33
33
N
1
-4.99
0.50
120.30
115.31
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
1
-3.03
0.50
120.30
117.27
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
104
104
104
N
1
4.05
0.50
120.30
124.35
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
104
104
104
N
1
13.25
2.10
111.80
125.05
A
A
A
CG
CD
NE
ARG
ARG
ARG
110
110
110
N
1
A
LYS
125
73.34
39.89
PROTEIN_REP.PARAM
PROTEIN.TOP
GSP.PAR
GSP.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
29.3
0.76
0
0
0.76
0
-1.52
RESIDUES OF THE N-TERMINAL HIS6-TAG AND LINKER WERE DISORDERED AND NOT VISIBLE IN THE ELECTRON DENSITY MAP, AS WELL AS THE FIRST 7 RESIDUES OF RAB11A
0.285
0.009
0.265
0.265
2.05
30.0
919
11133
8.3
99.3
RANDOM
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1OIV
FLAT MODEL
53.7339
0.408489
0.34
0.35
5.00
0.39
0.33
2.05
30.0
79
1424
33
0
1312
0.016
1.7
24.0
1.11
0.472
0.037
0.397
2.18
166
1659
6
9.1
99.9
19.9
1.900
30.000
1OIW
13509
0.000
0.09600
1
22.1600
14.900
96.5
0.28800
1.90
1.97
9.350
1
14.00
81.6
refinement
CNS
1.1
data reduction
XDS
data scaling
XSCALE
phasing
AMoRE
X-ray structure of the small G protein Rab11a in complex with GTPgammaS
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
23
A
GLY
41
HELX_P
A
ASN
34
A
ASN
52
1
1
12
A
THR
77
A
THR
95
HELX_P
A
ARG
82
A
ARG
100
1
2
6
A
LYS
95
A
LYS
113
HELX_P
A
ASN
101
A
ASN
119
1
3
7
A
ASN
101
A
ASN
119
HELX_P
A
ALA
113
A
ALA
131
1
4
13
A
LYS
125
A
LYS
143
HELX_P
A
ARG
132
A
ARG
150
5
5
8
A
PRO
135
A
PRO
153
HELX_P
A
ASN
146
A
ASN
164
1
6
12
A
ASN
160
A
ASN
178
HELX_P
A
TYR
173
A
TYR
191
1
7
14
metalc
2.136
A
SER
25
A
OG
SER
43
1_555
A
MG
1175
C
MG
MG
1_555
metalc
2.148
A
THR
43
A
OG1
THR
61
1_555
A
MG
1175
C
MG
MG
1_555
metalc
2.183
A
GSP
1174
B
O2G
GSP
1_555
A
MG
1175
C
MG
MG
1_555
metalc
2.181
A
GSP
1174
B
O2B
GSP
1_555
A
MG
1175
C
MG
MG
1_555
metalc
2.370
A
MG
1175
C
MG
MG
1_555
A
HOH
2030
D
O
HOH
1_555
metalc
2.384
A
MG
1175
C
MG
MG
1_555
A
HOH
2077
D
O
HOH
1_555
PROTEIN TRANSPORT
SMALL G PROTEIN, INTRACELLULAR TRAFFICKING, GTP-BINDING, LIPOPROTEIN, PRENYLATION, PROTEIN TRANSPORT
1OIW
PDB
1
1OIW
R11A_HUMAN
UNP
1
P24410
-18
-1
1OIW
-18
-1
1OIW
A
1
1
18
1
173
1OIW
1
173
P24410
A
2
19
191
1
GLN
engineered mutation
LEU
70
1OIW
A
P24410
UNP
70
88
6
anti-parallel
parallel
parallel
parallel
parallel
A
VAL
46
A
VAL
64
A
VAL
55
A
VAL
73
A
LYS
58
A
LYS
76
A
THR
67
A
THR
85
A
TYR
10
A
TYR
28
A
GLY
18
A
GLY
36
A
GLY
86
A
GLY
104
A
ASP
92
A
ASP
110
A
VAL
118
A
VAL
136
A
ASN
124
A
ASN
142
A
SER
149
A
SER
167
A
GLU
152
A
GLU
170
BINDING SITE FOR RESIDUE MG A1175
Software
5
BINDING SITE FOR RESIDUE GSP A1174
Software
27
A
SER
25
A
SER
43
5
1_555
A
THR
43
A
THR
61
5
1_555
A
GSP
1174
B
GSP
5
1_555
A
HOH
2030
D
HOH
5
1_555
A
HOH
2077
D
HOH
5
1_555
A
SER
20
A
SER
38
27
1_555
A
GLY
21
A
GLY
39
27
1_555
A
VAL
22
A
VAL
40
27
1_555
A
GLY
23
A
GLY
41
27
1_555
A
LYS
24
A
LYS
42
27
1_555
A
SER
25
A
SER
43
27
1_555
A
ASN
26
A
ASN
44
27
1_555
A
PHE
36
A
PHE
54
27
1_555
A
ASN
37
A
ASN
55
27
1_555
A
LEU
38
A
LEU
56
27
1_555
A
SER
40
A
SER
58
27
1_555
A
SER
42
A
SER
60
27
1_555
A
THR
43
A
THR
61
27
1_555
A
ALA
68
A
ALA
86
27
1_555
A
GLY
69
A
GLY
87
27
1_555
A
ASN
124
A
ASN
142
27
1_555
A
LYS
125
A
LYS
143
27
1_555
A
ASP
127
A
ASP
145
27
1_555
A
LEU
128
A
LEU
146
27
1_555
A
SER
154
A
SER
172
27
1_555
A
ALA
155
A
ALA
173
27
1_555
A
LEU
156
A
LEU
174
27
1_555
A
MG
1175
C
MG
27
1_555
A
HOH
2039
D
HOH
27
1_555
A
HOH
2077
D
HOH
27
1_555
A
HOH
2078
D
HOH
27
1_555
A
HOH
2079
D
HOH
27
1_555
97
I 4 2 2