0.016332 0.000000 0.000000 0.000000 0.016332 0.000000 0.000000 0.000000 0.015179 0.00000 0.00000 0.00000 Tsai, C.-J. Liu, J.-H. Liao, Y.-D. Chen, L.-Y. Cheng, P.-T. Sun, Y.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 61.230 61.230 65.880 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N N N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N O N 223 N O N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 N C N 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N N Y 251 N C Y 252 N C Y 253 N N N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N O N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N C N 361 N C N 362 N O N 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N C N 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N O N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N S N 428 N O N 429 N O N 430 N O N 431 N O N 432 N N N 433 S C N 434 N C N 435 N O N 436 R C N 437 N O N 438 N C N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C Y 454 N C Y 455 N C Y 456 N C Y 457 N N Y 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N N N 477 S C N 478 N C N 479 N O N 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C N 487 N O N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N N N 501 S C N 502 N C N 503 N O N 504 N C N 505 N C N 506 N C N 507 N O N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing Y 252 N sing Y 253 N doub Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing Y 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing Y 376 N doub Y 377 N sing Y 378 N sing N 379 N sing Y 380 N doub N 381 N sing Y 382 N doub N 383 N sing Y 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing Y 449 N doub Y 450 N sing Y 451 N sing N 452 N sing Y 453 N doub Y 454 N sing Y 455 N sing N 456 N sing Y 457 N sing Y 458 N doub N 459 N sing Y 460 N doub N 461 N sing Y 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing Y 477 N doub Y 478 N sing Y 479 N sing N 480 N sing Y 481 N doub N 482 N sing Y 483 N doub N 484 N sing Y 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N doub N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing To be Published 0353 Retro and Novel Binding Modes in Cytotoxic Ribonucleases from Rana Catesbeiana of Two Crystal Structures Complexed with (2',5'Cpg) and D(Apcpgpa) 10.2210/pdb1oj8/pdb pdb_00001oj8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CONFOCAL IMAGE PLATE RIGAKU IMAGE PLATE SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU RU300 12185.388 RC-RNASE6 RIBONUCLEASE 1 nat polymer 1199.844 5'-D(*AP*CP*GP*AP)-3' 1 syn polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 220 nat water RIBONUCLEASE no yes (PCA)DWDTFQKKHLTDTKKVKCDVEMKKALFDCKKTNTFIFARPPRVQALCKNIKNNTNVLSRDVFYLPQCNRKKLPCH YRLDGSTNTICLTCMKELPIHFAGVGKCP QDWDTFQKKHLTDTKKVKCDVEMKKALFDCKKTNTFIFARPPRVQALCKNIKNNTNVLSRDVFYLPQCNRKKLPCHYRLD GSTNTICLTCMKELPIHFAGVGKCP A polypeptide(L) no no (DA)(DC)(DG)(DA) ACGA B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n BULL FROG sample AAG31442 8400 RANA CATESBEIANA OCCYTE 1 2.59 53 7.0 3.3 M AMMONIUM SULFATE,2% PEG 400, pH 7.0 entity_poly pdbx_database_status struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Derived calculations Other Polymer sequence Data collection Database references Derived calculations Refinement description 1 0 2004-07-15 1 1 2011-05-08 1 2 2011-07-13 2 0 2020-03-11 2 1 2023-12-13 _entity_poly.pdbx_seq_one_letter_code_can _pdbx_database_status.status_code_sf _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NONPRODUCTIVE AND NOVEL BINDING MODES IN CYTOTOXIC RIBONUCLEASES FROM RANA CATESBEIANA OF TWO CRYSTAL STRUCTURES COMPLEXED WITH (2',5' CPG) AND D(APCPGPA) PDBE Y PDBE 2003-07-07 REL REL 1 A O HOH 2005 5.89 1 A O HOH 2006 6.39 1 A O HOH 2007 8.01 1 A O HOH 2010 6.00 1 A O HOH 2011 8.19 1 A O HOH 2015 7.61 1 A O HOH 2027 6.72 1 A O HOH 2029 6.13 1 A O HOH 2033 8.31 1 A O HOH 2035 10.64 1 A O HOH 2036 6.73 1 A O HOH 2042 6.41 1 A O HOH 2043 8.76 1 A O HOH 2045 6.33 1 A O HOH 2047 6.65 1 A O HOH 2048 6.54 1 A O HOH 2051 7.20 1 A O HOH 2071 6.61 1 A O HOH 2084 6.17 1 A O HOH 2090 6.32 1 A O HOH 2093 7.45 1 B O HOH 2006 6.63 1 B O HOH 2009 6.35 1 B O HOH 2011 9.20 1 B O HOH 2012 6.98 1 B O HOH 2013 9.76 1 B O HOH 2014 8.65 1 B O HOH 2015 6.23 SO4 SULFATE ION HOH water 1ONC PDB ENTRY 1ONC PDB experimental model SO4 201 3 SO4 SO4 201 A SO4 202 3 SO4 SO4 202 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A HOH 2113 4 HOH HOH 2113 A HOH 2114 4 HOH HOH 2114 A HOH 2115 4 HOH HOH 2115 A HOH 2116 4 HOH HOH 2116 A HOH 2117 4 HOH HOH 2117 A HOH 2118 4 HOH HOH 2118 A HOH 2119 4 HOH HOH 2119 A HOH 2120 4 HOH HOH 2120 A HOH 2121 4 HOH HOH 2121 A HOH 2122 4 HOH HOH 2122 A HOH 2123 4 HOH HOH 2123 A HOH 2124 4 HOH HOH 2124 A HOH 2125 4 HOH HOH 2125 A HOH 2126 4 HOH HOH 2126 A HOH 2127 4 HOH HOH 2127 A HOH 2128 4 HOH HOH 2128 A HOH 2129 4 HOH HOH 2129 A HOH 2130 4 HOH HOH 2130 A HOH 2131 4 HOH HOH 2131 A HOH 2132 4 HOH HOH 2132 A HOH 2133 4 HOH HOH 2133 A HOH 2134 4 HOH HOH 2134 A HOH 2135 4 HOH HOH 2135 A HOH 2136 4 HOH HOH 2136 A HOH 2137 4 HOH HOH 2137 A HOH 2138 4 HOH HOH 2138 A HOH 2139 4 HOH HOH 2139 A HOH 2140 4 HOH HOH 2140 A HOH 2141 4 HOH HOH 2141 A HOH 2142 4 HOH HOH 2142 A HOH 2143 4 HOH HOH 2143 A HOH 2144 4 HOH HOH 2144 A HOH 2145 4 HOH HOH 2145 A HOH 2146 4 HOH HOH 2146 A HOH 2147 4 HOH HOH 2147 A HOH 2148 4 HOH HOH 2148 A HOH 2149 4 HOH HOH 2149 A HOH 2150 4 HOH HOH 2150 A HOH 2151 4 HOH HOH 2151 A HOH 2152 4 HOH HOH 2152 A HOH 2153 4 HOH HOH 2153 A HOH 2154 4 HOH HOH 2154 A HOH 2155 4 HOH HOH 2155 A HOH 2156 4 HOH HOH 2156 A HOH 2157 4 HOH HOH 2157 A HOH 2158 4 HOH HOH 2158 A HOH 2159 4 HOH HOH 2159 A HOH 2160 4 HOH HOH 2160 A HOH 2161 4 HOH HOH 2161 A HOH 2162 4 HOH HOH 2162 A HOH 2163 4 HOH HOH 2163 A HOH 2164 4 HOH HOH 2164 A HOH 2165 4 HOH HOH 2165 A HOH 2166 4 HOH HOH 2166 A HOH 2167 4 HOH HOH 2167 A HOH 2168 4 HOH HOH 2168 A HOH 2169 4 HOH HOH 2169 A HOH 2170 4 HOH HOH 2170 A HOH 2171 4 HOH HOH 2171 A HOH 2172 4 HOH HOH 2172 A HOH 2173 4 HOH HOH 2173 A HOH 2174 4 HOH HOH 2174 A HOH 2175 4 HOH HOH 2175 A HOH 2176 4 HOH HOH 2176 A HOH 2177 4 HOH HOH 2177 A HOH 2178 4 HOH HOH 2178 A HOH 2179 4 HOH HOH 2179 A HOH 2180 4 HOH HOH 2180 A HOH 2181 4 HOH HOH 2181 A HOH 2182 4 HOH HOH 2182 A HOH 2183 4 HOH HOH 2183 A HOH 2184 4 HOH HOH 2184 A HOH 2185 4 HOH HOH 2185 A HOH 2186 4 HOH HOH 2186 A HOH 2187 4 HOH HOH 2187 A HOH 2188 4 HOH HOH 2188 A HOH 2189 4 HOH HOH 2189 A HOH 2190 4 HOH HOH 2190 A HOH 2191 4 HOH HOH 2191 A HOH 2192 4 HOH HOH 2192 A HOH 2193 4 HOH HOH 2193 A HOH 2194 4 HOH HOH 2194 A HOH 2195 4 HOH HOH 2195 A HOH 2196 4 HOH HOH 2196 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B HOH 2014 4 HOH HOH 2014 B HOH 2015 4 HOH HOH 2015 B HOH 2016 4 HOH HOH 2016 B HOH 2017 4 HOH HOH 2017 B HOH 2018 4 HOH HOH 2018 B HOH 2019 4 HOH HOH 2019 B HOH 2020 4 HOH HOH 2020 B HOH 2021 4 HOH HOH 2021 B HOH 2022 4 HOH HOH 2022 B HOH 2023 4 HOH HOH 2023 B HOH 2024 4 HOH HOH 2024 B PCA 1 n 1 PCA 1 A ASP 2 n 2 ASP 2 A TRP 3 n 3 TRP 3 A ASP 4 n 4 ASP 4 A THR 5 n 5 THR 5 A PHE 6 n 6 PHE 6 A GLN 7 n 7 GLN 7 A LYS 8 n 8 LYS 8 A LYS 9 n 9 LYS 9 A HIS 10 n 10 HIS 10 A LEU 11 n 11 LEU 11 A THR 12 n 12 THR 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A LYS 15 n 15 LYS 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A LYS 18 n 18 LYS 18 A CYS 19 n 19 CYS 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A GLU 22 n 22 GLU 22 A MET 23 n 23 MET 23 A LYS 24 n 24 LYS 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A LEU 27 n 27 LEU 27 A PHE 28 n 28 PHE 28 A ASP 29 n 29 ASP 29 A CYS 30 n 30 CYS 30 A LYS 31 n 31 LYS 31 A LYS 32 n 32 LYS 32 A THR 33 n 33 THR 33 A ASN 34 n 34 ASN 34 A THR 35 n 35 THR 35 A PHE 36 n 36 PHE 36 A ILE 37 n 37 ILE 37 A PHE 38 n 38 PHE 38 A ALA 39 n 39 ALA 39 A ARG 40 n 40 ARG 40 A PRO 41 n 41 PRO 41 A PRO 42 n 42 PRO 42 A ARG 43 n 43 ARG 43 A VAL 44 n 44 VAL 44 A GLN 45 n 45 GLN 45 A ALA 46 n 46 ALA 46 A LEU 47 n 47 LEU 47 A CYS 48 n 48 CYS 48 A LYS 49 n 49 LYS 49 A ASN 50 n 50 ASN 50 A ILE 51 n 51 ILE 51 A LYS 52 n 52 LYS 52 A ASN 53 n 53 ASN 53 A ASN 54 n 54 ASN 54 A THR 55 n 55 THR 55 A ASN 56 n 56 ASN 56 A VAL 57 n 57 VAL 57 A LEU 58 n 58 LEU 58 A SER 59 n 59 SER 59 A ARG 60 n 60 ARG 60 A ASP 61 n 61 ASP 61 A VAL 62 n 62 VAL 62 A PHE 63 n 63 PHE 63 A TYR 64 n 64 TYR 64 A LEU 65 n 65 LEU 65 A PRO 66 n 66 PRO 66 A GLN 67 n 67 GLN 67 A CYS 68 n 68 CYS 68 A ASN 69 n 69 ASN 69 A ARG 70 n 70 ARG 70 A LYS 71 n 71 LYS 71 A LYS 72 n 72 LYS 72 A LEU 73 n 73 LEU 73 A PRO 74 n 74 PRO 74 A CYS 75 n 75 CYS 75 A HIS 76 n 76 HIS 76 A TYR 77 n 77 TYR 77 A ARG 78 n 78 ARG 78 A LEU 79 n 79 LEU 79 A ASP 80 n 80 ASP 80 A GLY 81 n 81 GLY 81 A SER 82 n 82 SER 82 A THR 83 n 83 THR 83 A ASN 84 n 84 ASN 84 A THR 85 n 85 THR 85 A ILE 86 n 86 ILE 86 A CYS 87 n 87 CYS 87 A LEU 88 n 88 LEU 88 A THR 89 n 89 THR 89 A CYS 90 n 90 CYS 90 A MET 91 n 91 MET 91 A LYS 92 n 92 LYS 92 A GLU 93 n 93 GLU 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A ILE 96 n 96 ILE 96 A HIS 97 n 97 HIS 97 A PHE 98 n 98 PHE 98 A ALA 99 n 99 ALA 99 A GLY 100 n 100 GLY 100 A VAL 101 n 101 VAL 101 A GLY 102 n 102 GLY 102 A LYS 103 n 103 LYS 103 A CYS 104 n 104 CYS 104 A PRO 105 n 105 PRO 105 A DA 301 n 1 DA 301 B DC 302 n 2 DC 302 B DG 303 n 3 DG 303 B DA 304 n 4 DA 304 B author_and_software_defined_assembly PQS 2 dimeric 839 -24.0 7370 A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 12 A N THR 12 A O ILE 37 A O ILE 37 A N ASN 34 A N ASN 34 A O CYS 68 A O CYS 68 A N LYS 71 A N LYS 71 A O HIS 76 A O HIS 76 A N VAL 57 A N VAL 57 A O LEU 88 A O LEU 88 A N MET 91 A N MET 91 A O LEU 94 A O LEU 94 A N PHE 63 A N PHE 63 A O ASN 84 A O ASN 84 1 A HOH 2015 E HOH 1 A HOH 2089 E HOH 1 A HOH 2127 E HOH 1 -16.95 2.20 117.20 100.25 A A A CA C N PCA PCA ASP 1 1 2 Y 1 14.24 1.60 122.70 136.94 A A A O C N PCA PCA ASP 1 1 2 Y 1 -7.22 1.20 119.70 112.48 B B B C3' O3' P DC DC DG 302 302 303 Y 1 9.53 1.10 110.50 120.03 B B B O3' P OP1 DC DG DG 302 303 303 Y 1 14.00 1.20 119.70 133.70 B B B C3' O3' P DG DG DA 303 303 304 Y 1 A A O O HOH HOH 2110 2110 2.02 1_555 8_664 1 A CYS 75 -144.54 39.72 PROTEIN_PCA123.PARAM PROTEIN)PCA123.TOP ACGA.PARAM ACGA.TOP ION.PARAM ION.TOP WATER.PARAM WATER.TOP 29.6 3.45 0.00 0.00 3.45 0.00 -6.90 .273 0.008 .229 .229 1.70 20.0 1218 11741 10.4 82.0 RANDOM 1 RESTRAINED THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1ONC FLAT MODEL 50.9 0.38 0.28 0.22 5.00 0.19 0.14 1.70 20.0 220 1162 10 83 849 0.007 1.4 22.7 0.91 1.45 1.50 2.06 2.00 2.19 2.00 3.23 2.50 0.353 0.026 0.290 1.81 179 1491 6 10.7 72.1 20.7 1.7 20.0 1OJ8 12965 2.0 0.044 1 35.5 7.32 90.5 0.43 1.7 1.76 4.8 1 7.3 97.5 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE Novel and retro Binding Modes in Cytotoxic Ribonucleases from Rana catesbeiana of Two Crystal Structures Complexed with d(ApCpGpA) and (2',5'CpG) 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N A ASP 2 A ASP 2 HELX_P A HIS 10 A HIS 10 1 1 9 A LYS 18 A LYS 18 HELX_P A MET 23 A MET 23 1 2 6 A ARG 40 A ARG 40 HELX_P A LEU 47 A LEU 47 1 3 8 disulf 2.027 A CYS 19 A SG CYS 19 1_555 A CYS 68 A SG CYS 68 1_555 disulf 2.025 A CYS 30 A SG CYS 30 1_555 A CYS 75 A SG CYS 75 1_555 disulf 2.024 A CYS 48 A SG CYS 48 1_555 A CYS 90 A SG CYS 90 1_555 disulf 2.029 A CYS 87 A SG CYS 87 1_555 A CYS 104 A SG CYS 104 1_555 covale 1.337 both A PCA 1 A C PCA 1 1_555 A ASP 2 A N ASP 2 1_555 HYDROLASE CYTOTOXIC RIBONUCLEASES, ANTI-TUMOR ACTIVITY, SIALIC BINDING AND NUCLEOTIDE BINDING, HYDROLASE A LEU 73 A LEU 73 1 A PRO 74 A PRO 74 -0.20 Q9DFY5 UNP 1 Q9DFY5 1OJ8 PDB 2 1OJ8 24 128 1OJ8 1 105 Q9DFY5 A 1 1 105 301 304 1OJ8 301 304 1OJ8 B 2 1 4 2 3 3 2 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 11 A LEU 11 A THR 12 A THR 12 A ILE 37 A ILE 37 A PHE 38 A PHE 38 A THR 33 A THR 33 A THR 35 A THR 35 A GLN 67 A GLN 67 A LYS 72 A LYS 72 A HIS 76 A HIS 76 A ASP 80 A ASP 80 A THR 55 A THR 55 A LEU 58 A LEU 58 A ILE 86 A ILE 86 A MET 91 A MET 91 A LEU 94 A LEU 94 A VAL 101 A VAL 101 A PHE 63 A PHE 63 A TYR 64 A TYR 64 A THR 83 A THR 83 A ASN 84 A ASN 84 BINDING SITE FOR RESIDUE SO4 A 201 A SO4 201 Software 5 BINDING SITE FOR RESIDUE SO4 A 202 A SO4 202 Software 5 A LYS 9 A LYS 9 5 1_555 A HIS 10 A HIS 10 5 1_555 A HIS 97 A HIS 97 5 1_555 A PHE 98 A PHE 98 5 1_555 A HOH 2049 E HOH 5 1_555 A ARG 70 A ARG 70 5 1_555 A LYS 71 A LYS 71 5 1_555 A LYS 72 A LYS 72 5 1_555 A LEU 73 A LEU 73 5 1_555 A HOH 2164 E HOH 5 1_555 96 P 43 21 2