0.013132
0.007582
0.000000
0.000000
0.015163
0.000000
0.000000
0.000000
0.007647
0.00000
0.00000
0.00000
Modis, Y.
Harrison, S.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
76.151
76.151
130.775
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
R
C
N
252
R
C
N
253
R
C
N
254
S
C
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
UK
Nature
NATUAS
0006
0028-0836
427
313
10.1038/NATURE02165
14737159
Structure of the Dengue Virus Envelope Protein After Membrane Fusion
2004
US
Proc.Natl.Acad.Sci.USA.
PNASA6
0040
0027-8424
100
6986
10.1073/PNAS.0832193100
12759475
A Ligand-Binding Pocket in the Dengue Virus Envelope Glycoprotein
2003
10.2210/pdb1ok8/pdb
pdb_00001ok8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2003-03-15
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
14-BM-C
APS
0.9
SYNCHROTRON
APS BEAMLINE 14-BM-C
43819.391
MAJOR ENVELOPE PROTEIN E
SOLUBLE ECTODOMAIN, RESIDUES 281-674
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
205
nat
water
DENGUE VIRUS TYPE 2 MAJOR ENVELOPE PROTEIN E
no
no
MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEP
TLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGK
EVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF
KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTI
VIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK
MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEP
TLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGK
EVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTF
KNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTI
VIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
PR159/S1
sample
11060
DENGUE VIRUS TYPE 2
SCHNEIDER 2
7227
DROSOPHILA MELANOGASTER
PMTT
1
2.445
49
THE THREE DOMAINS OF 1OAM WERE PLACED SEQUENTIALLY IN THE FOLLOWING ORDER: DOMAIN II, DOMAIN I, DOMAIN III.
7.00
20-30% PEG 400, 0.08 M NACL, 0.1 M MOPS PH 7-8.
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Derived calculations
Non-polymer description
Other
Refinement description
Structure summary
Version format compliance
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2004-01-29
1
1
2012-01-25
1
2
2020-07-29
1
3
2023-12-13
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DENGUE METHYLTRANSFERASE
CRYSTAL STRUCTURE OF THE DENGUE 2 VIRUS ENVELOPE PROTEIN IN COMPLEX WITH N-OCTYL- BETA-D-GLUCOSIDE
CRYSTAL STRUCTURE OF THE DENGUE 2 VIRUS ENVELOPE PROTEIN
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
TWO SHEETS ARE DEFINED.
PDBE
Y
PDBE
2003-07-19
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
CL
CHLORIDE ION
HOH
water
RESIDUES 100-108 FORM THE GLYCINE-RICH, HYDROPHOBIC FUSION
PEPTIDE (ALLISON ET AL., J.VIROL. 75, 4268-75 (2001))
THE MOLECULE CRYSTALLIZED LACKS THE LAST 101 RESIDUES OF E,
INCLUDING THE C-TERMINAL VIRAL TRANSMEMBRANE DOMAIN.
1OAM
PDB ENTRY 1OAM
PDB
experimental model
NAG
1395
2
NAG
NAG
1395
A
CL
1396
3
CL
CL
1396
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2132
4
HOH
HOH
2132
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2134
4
HOH
HOH
2134
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2138
4
HOH
HOH
2138
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2145
4
HOH
HOH
2145
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2149
4
HOH
HOH
2149
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2152
4
HOH
HOH
2152
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2155
4
HOH
HOH
2155
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2158
4
HOH
HOH
2158
A
HOH
2159
4
HOH
HOH
2159
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2165
4
HOH
HOH
2165
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2168
4
HOH
HOH
2168
A
HOH
2169
4
HOH
HOH
2169
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2172
4
HOH
HOH
2172
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2174
4
HOH
HOH
2174
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2178
4
HOH
HOH
2178
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2180
4
HOH
HOH
2180
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2190
4
HOH
HOH
2190
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2195
4
HOH
HOH
2195
A
HOH
2196
4
HOH
HOH
2196
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2199
4
HOH
HOH
2199
A
HOH
2200
4
HOH
HOH
2200
A
HOH
2201
4
HOH
HOH
2201
A
HOH
2202
4
HOH
HOH
2202
A
HOH
2203
4
HOH
HOH
2203
A
HOH
2204
4
HOH
HOH
2204
A
HOH
2205
4
HOH
HOH
2205
A
MET
1
n
1
MET
1
A
ARG
2
n
2
ARG
2
A
CYS
3
n
3
CYS
3
A
ILE
4
n
4
ILE
4
A
GLY
5
n
5
GLY
5
A
ILE
6
n
6
ILE
6
A
SER
7
n
7
SER
7
A
ASN
8
n
8
ASN
8
A
ARG
9
n
9
ARG
9
A
ASP
10
n
10
ASP
10
A
PHE
11
n
11
PHE
11
A
VAL
12
n
12
VAL
12
A
GLU
13
n
13
GLU
13
A
GLY
14
n
14
GLY
14
A
VAL
15
n
15
VAL
15
A
SER
16
n
16
SER
16
A
GLY
17
n
17
GLY
17
A
GLY
18
n
18
GLY
18
A
SER
19
n
19
SER
19
A
TRP
20
n
20
TRP
20
A
VAL
21
n
21
VAL
21
A
ASP
22
n
22
ASP
22
A
ILE
23
n
23
ILE
23
A
VAL
24
n
24
VAL
24
A
LEU
25
n
25
LEU
25
A
GLU
26
n
26
GLU
26
A
HIS
27
n
27
HIS
27
A
GLY
28
n
28
GLY
28
A
SER
29
n
29
SER
29
A
CYS
30
n
30
CYS
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
THR
33
n
33
THR
33
A
MET
34
n
34
MET
34
A
ALA
35
n
35
ALA
35
A
LYS
36
n
36
LYS
36
A
ASN
37
n
37
ASN
37
A
LYS
38
n
38
LYS
38
A
PRO
39
n
39
PRO
39
A
THR
40
n
40
THR
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
PHE
43
n
43
PHE
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
ILE
46
n
46
ILE
46
A
LYS
47
n
47
LYS
47
A
THR
48
n
48
THR
48
A
GLU
49
n
49
GLU
49
A
ALA
50
n
50
ALA
50
A
LYS
51
n
51
LYS
51
A
GLN
52
n
52
GLN
52
A
PRO
53
n
53
PRO
53
A
ALA
54
n
54
ALA
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
ARG
57
n
57
ARG
57
A
LYS
58
n
58
LYS
58
A
TYR
59
n
59
TYR
59
A
CYS
60
n
60
CYS
60
A
ILE
61
n
61
ILE
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
LYS
64
n
64
LYS
64
A
LEU
65
n
65
LEU
65
A
THR
66
n
66
THR
66
A
ASN
67
n
67
ASN
67
A
THR
68
n
68
THR
68
A
THR
69
n
69
THR
69
A
THR
70
n
70
THR
70
A
GLU
71
n
71
GLU
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
CYS
74
n
74
CYS
74
A
PRO
75
n
75
PRO
75
A
THR
76
n
76
THR
76
A
GLN
77
n
77
GLN
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
PRO
80
n
80
PRO
80
A
THR
81
n
81
THR
81
A
LEU
82
n
82
LEU
82
A
ASN
83
n
83
ASN
83
A
GLU
84
n
84
GLU
84
A
GLU
85
n
85
GLU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
LYS
88
n
88
LYS
88
A
ARG
89
n
89
ARG
89
A
PHE
90
n
90
PHE
90
A
VAL
91
n
91
VAL
91
A
CYS
92
n
92
CYS
92
A
LYS
93
n
93
LYS
93
A
HIS
94
n
94
HIS
94
A
SER
95
n
95
SER
95
A
MET
96
n
96
MET
96
A
VAL
97
n
97
VAL
97
A
ASP
98
n
98
ASP
98
A
ARG
99
n
99
ARG
99
A
GLY
100
n
100
GLY
100
A
TRP
101
n
101
TRP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
CYS
105
n
105
CYS
105
A
GLY
106
n
106
GLY
106
A
LEU
107
n
107
LEU
107
A
PHE
108
n
108
PHE
108
A
GLY
109
n
109
GLY
109
A
LYS
110
n
110
LYS
110
A
GLY
111
n
111
GLY
111
A
GLY
112
n
112
GLY
112
A
ILE
113
n
113
ILE
113
A
VAL
114
n
114
VAL
114
A
THR
115
n
115
THR
115
A
CYS
116
n
116
CYS
116
A
ALA
117
n
117
ALA
117
A
MET
118
n
118
MET
118
A
PHE
119
n
119
PHE
119
A
THR
120
n
120
THR
120
A
CYS
121
n
121
CYS
121
A
LYS
122
n
122
LYS
122
A
LYS
123
n
123
LYS
123
A
ASN
124
n
124
ASN
124
A
MET
125
n
125
MET
125
A
GLU
126
n
126
GLU
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
ILE
129
n
129
ILE
129
A
VAL
130
n
130
VAL
130
A
GLN
131
n
131
GLN
131
A
PRO
132
n
132
PRO
132
A
GLU
133
n
133
GLU
133
A
ASN
134
n
134
ASN
134
A
LEU
135
n
135
LEU
135
A
GLU
136
n
136
GLU
136
A
TYR
137
n
137
TYR
137
A
THR
138
n
138
THR
138
A
VAL
139
n
139
VAL
139
A
VAL
140
n
140
VAL
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
HIS
144
n
144
HIS
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
GLY
159
n
159
GLY
159
A
LYS
160
n
160
LYS
160
A
GLU
161
n
161
GLU
161
A
VAL
162
n
162
VAL
162
A
LYS
163
n
163
LYS
163
A
ILE
164
n
164
ILE
164
A
THR
165
n
165
THR
165
A
PRO
166
n
166
PRO
166
A
GLN
167
n
167
GLN
167
A
SER
168
n
168
SER
168
A
SER
169
n
169
SER
169
A
ILE
170
n
170
ILE
170
A
THR
171
n
171
THR
171
A
GLU
172
n
172
GLU
172
A
ALA
173
n
173
ALA
173
A
GLU
174
n
174
GLU
174
A
LEU
175
n
175
LEU
175
A
THR
176
n
176
THR
176
A
GLY
177
n
177
GLY
177
A
TYR
178
n
178
TYR
178
A
GLY
179
n
179
GLY
179
A
THR
180
n
180
THR
180
A
VAL
181
n
181
VAL
181
A
THR
182
n
182
THR
182
A
MET
183
n
183
MET
183
A
GLU
184
n
184
GLU
184
A
CYS
185
n
185
CYS
185
A
SER
186
n
186
SER
186
A
PRO
187
n
187
PRO
187
A
ARG
188
n
188
ARG
188
A
THR
189
n
189
THR
189
A
GLY
190
n
190
GLY
190
A
LEU
191
n
191
LEU
191
A
ASP
192
n
192
ASP
192
A
PHE
193
n
193
PHE
193
A
ASN
194
n
194
ASN
194
A
GLU
195
n
195
GLU
195
A
MET
196
n
196
MET
196
A
VAL
197
n
197
VAL
197
A
LEU
198
n
198
LEU
198
A
LEU
199
n
199
LEU
199
A
GLN
200
n
200
GLN
200
A
MET
201
n
201
MET
201
A
LYS
202
n
202
LYS
202
A
ASP
203
n
203
ASP
203
A
LYS
204
n
204
LYS
204
A
ALA
205
n
205
ALA
205
A
TRP
206
n
206
TRP
206
A
LEU
207
n
207
LEU
207
A
VAL
208
n
208
VAL
208
A
HIS
209
n
209
HIS
209
A
ARG
210
n
210
ARG
210
A
GLN
211
n
211
GLN
211
A
TRP
212
n
212
TRP
212
A
PHE
213
n
213
PHE
213
A
LEU
214
n
214
LEU
214
A
ASP
215
n
215
ASP
215
A
LEU
216
n
216
LEU
216
A
PRO
217
n
217
PRO
217
A
LEU
218
n
218
LEU
218
A
PRO
219
n
219
PRO
219
A
TRP
220
n
220
TRP
220
A
LEU
221
n
221
LEU
221
A
PRO
222
n
222
PRO
222
A
GLY
223
n
223
GLY
223
A
ALA
224
n
224
ALA
224
A
ASP
225
n
225
ASP
225
A
THR
226
n
226
THR
226
A
GLN
227
n
227
GLN
227
A
GLY
228
n
228
GLY
228
A
SER
229
n
229
SER
229
A
ASN
230
n
230
ASN
230
A
TRP
231
n
231
TRP
231
A
ILE
232
n
232
ILE
232
A
GLN
233
n
233
GLN
233
A
LYS
234
n
234
LYS
234
A
GLU
235
n
235
GLU
235
A
THR
236
n
236
THR
236
A
LEU
237
n
237
LEU
237
A
VAL
238
n
238
VAL
238
A
THR
239
n
239
THR
239
A
PHE
240
n
240
PHE
240
A
LYS
241
n
241
LYS
241
A
ASN
242
n
242
ASN
242
A
PRO
243
n
243
PRO
243
A
HIS
244
n
244
HIS
244
A
ALA
245
n
245
ALA
245
A
LYS
246
n
246
LYS
246
A
LYS
247
n
247
LYS
247
A
GLN
248
n
248
GLN
248
A
ASP
249
n
249
ASP
249
A
VAL
250
n
250
VAL
250
A
VAL
251
n
251
VAL
251
A
VAL
252
n
252
VAL
252
A
LEU
253
n
253
LEU
253
A
GLY
254
n
254
GLY
254
A
SER
255
n
255
SER
255
A
GLN
256
n
256
GLN
256
A
GLU
257
n
257
GLU
257
A
GLY
258
n
258
GLY
258
A
ALA
259
n
259
ALA
259
A
MET
260
n
260
MET
260
A
HIS
261
n
261
HIS
261
A
THR
262
n
262
THR
262
A
ALA
263
n
263
ALA
263
A
LEU
264
n
264
LEU
264
A
THR
265
n
265
THR
265
A
GLY
266
n
266
GLY
266
A
ALA
267
n
267
ALA
267
A
THR
268
n
268
THR
268
A
GLU
269
n
269
GLU
269
A
ILE
270
n
270
ILE
270
A
GLN
271
n
271
GLN
271
A
MET
272
n
272
MET
272
A
SER
273
n
273
SER
273
A
SER
274
n
274
SER
274
A
GLY
275
n
275
GLY
275
A
ASN
276
n
276
ASN
276
A
LEU
277
n
277
LEU
277
A
LEU
278
n
278
LEU
278
A
PHE
279
n
279
PHE
279
A
THR
280
n
280
THR
280
A
GLY
281
n
281
GLY
281
A
HIS
282
n
282
HIS
282
A
LEU
283
n
283
LEU
283
A
LYS
284
n
284
LYS
284
A
CYS
285
n
285
CYS
285
A
ARG
286
n
286
ARG
286
A
LEU
287
n
287
LEU
287
A
ARG
288
n
288
ARG
288
A
MET
289
n
289
MET
289
A
ASP
290
n
290
ASP
290
A
LYS
291
n
291
LYS
291
A
LEU
292
n
292
LEU
292
A
GLN
293
n
293
GLN
293
A
LEU
294
n
294
LEU
294
A
LYS
295
n
295
LYS
295
A
GLY
296
n
296
GLY
296
A
MET
297
n
297
MET
297
A
SER
298
n
298
SER
298
A
TYR
299
n
299
TYR
299
A
SER
300
n
300
SER
300
A
MET
301
n
301
MET
301
A
CYS
302
n
302
CYS
302
A
THR
303
n
303
THR
303
A
GLY
304
n
304
GLY
304
A
LYS
305
n
305
LYS
305
A
PHE
306
n
306
PHE
306
A
LYS
307
n
307
LYS
307
A
VAL
308
n
308
VAL
308
A
VAL
309
n
309
VAL
309
A
LYS
310
n
310
LYS
310
A
GLU
311
n
311
GLU
311
A
ILE
312
n
312
ILE
312
A
ALA
313
n
313
ALA
313
A
GLU
314
n
314
GLU
314
A
THR
315
n
315
THR
315
A
GLN
316
n
316
GLN
316
A
HIS
317
n
317
HIS
317
A
GLY
318
n
318
GLY
318
A
THR
319
n
319
THR
319
A
ILE
320
n
320
ILE
320
A
VAL
321
n
321
VAL
321
A
ILE
322
n
322
ILE
322
A
ARG
323
n
323
ARG
323
A
VAL
324
n
324
VAL
324
A
GLN
325
n
325
GLN
325
A
TYR
326
n
326
TYR
326
A
GLU
327
n
327
GLU
327
A
GLY
328
n
328
GLY
328
A
ASP
329
n
329
ASP
329
A
GLY
330
n
330
GLY
330
A
SER
331
n
331
SER
331
A
PRO
332
n
332
PRO
332
A
CYS
333
n
333
CYS
333
A
LYS
334
n
334
LYS
334
A
ILE
335
n
335
ILE
335
A
PRO
336
n
336
PRO
336
A
PHE
337
n
337
PHE
337
A
GLU
338
n
338
GLU
338
A
ILE
339
n
339
ILE
339
A
MET
340
n
340
MET
340
A
ASP
341
n
341
ASP
341
A
LEU
342
n
342
LEU
342
A
GLU
343
n
343
GLU
343
A
LYS
344
n
344
LYS
344
A
ARG
345
n
345
ARG
345
A
HIS
346
n
346
HIS
346
A
VAL
347
n
347
VAL
347
A
LEU
348
n
348
LEU
348
A
GLY
349
n
349
GLY
349
A
ARG
350
n
350
ARG
350
A
LEU
351
n
351
LEU
351
A
ILE
352
n
352
ILE
352
A
THR
353
n
353
THR
353
A
VAL
354
n
354
VAL
354
A
ASN
355
n
355
ASN
355
A
PRO
356
n
356
PRO
356
A
ILE
357
n
357
ILE
357
A
VAL
358
n
358
VAL
358
A
THR
359
n
359
THR
359
A
GLU
360
n
360
GLU
360
A
LYS
361
n
361
LYS
361
A
ASP
362
n
362
ASP
362
A
SER
363
n
363
SER
363
A
PRO
364
n
364
PRO
364
A
VAL
365
n
365
VAL
365
A
ASN
366
n
366
ASN
366
A
ILE
367
n
367
ILE
367
A
GLU
368
n
368
GLU
368
A
ALA
369
n
369
ALA
369
A
GLU
370
n
370
GLU
370
A
PRO
371
n
371
PRO
371
A
PRO
372
n
372
PRO
372
A
PHE
373
n
373
PHE
373
A
GLY
374
n
374
GLY
374
A
ASP
375
n
375
ASP
375
A
SER
376
n
376
SER
376
A
TYR
377
n
377
TYR
377
A
ILE
378
n
378
ILE
378
A
ILE
379
n
379
ILE
379
A
ILE
380
n
380
ILE
380
A
GLY
381
n
381
GLY
381
A
VAL
382
n
382
VAL
382
A
GLU
383
n
383
GLU
383
A
PRO
384
n
384
PRO
384
A
GLY
385
n
385
GLY
385
A
GLN
386
n
386
GLN
386
A
LEU
387
n
387
LEU
387
A
LYS
388
n
388
LYS
388
A
LEU
389
n
389
LEU
389
A
ASN
390
n
390
ASN
390
A
TRP
391
n
391
TRP
391
A
PHE
392
n
392
PHE
392
A
LYS
393
n
393
LYS
393
A
LYS
394
n
394
LYS
394
A
author_and_software_defined_assembly
PISA
3
trimeric
12630
-24.1
46840
A
ASN
67
GLYCOSYLATION SITE
A
ASN
67
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-38.0755000000
65.9487005236
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
38.0755000000
65.9487005236
0.0000000000
A
O
ILE
4
A
O
ILE
4
A
N
THR
32
A
N
THR
32
A
N
THR
33
A
N
THR
33
A
O
LEU
41
A
O
LEU
41
A
N
GLU
49
A
N
GLU
49
A
O
GLU
136
A
O
GLU
136
A
N
ILE
141
A
N
ILE
141
A
O
LYS
160
A
O
LYS
160
A
O
ILE
4
A
O
ILE
4
A
N
THR
32
A
N
THR
32
A
N
THR
33
A
N
THR
33
A
O
LEU
41
A
O
LEU
41
A
N
ALA
50
A
N
ALA
50
A
O
LEU
277
A
O
LEU
277
A
N
VAL
12
A
N
VAL
12
A
O
TRP
20
A
O
TRP
20
A
N
LEU
25
A
N
LEU
25
A
O
LEU
283
A
O
LEU
283
A
N
ARG
288
A
N
ARG
288
A
O
THR
182
A
O
THR
182
A
N
MET
183
A
N
MET
183
A
O
THR
171
A
O
THR
171
A
N
ARG
99
A
N
ARG
99
A
O
GLY
109
A
O
GLY
109
A
N
ILE
129
A
N
ILE
129
A
O
ALA
54
A
O
ALA
54
A
N
LYS
58
A
N
LYS
58
A
O
LEU
221
A
O
LEU
221
A
N
ARG
99
A
N
ARG
99
A
O
GLY
109
A
O
GLY
109
A
N
LYS
128
A
N
LYS
128
A
O
LEU
198
A
O
LEU
198
A
N
MET
201
A
N
MET
201
A
O
LYS
204
A
O
LYS
204
A
N
LEU
207
A
N
LEU
207
A
O
THR
268
A
O
THR
268
A
N
THR
239
A
N
THR
239
A
O
VAL
251
A
O
VAL
251
A
N
ALA
313
A
N
ALA
313
A
O
VAL
321
A
O
VAL
321
A
N
VAL
324
A
N
VAL
324
A
O
VAL
365
A
O
VAL
365
A
N
CYS
333
A
N
CYS
333
A
O
VAL
358
A
O
VAL
358
A
N
MET
340
A
N
MET
340
A
O
TYR
377
A
O
TYR
377
A
N
ILE
380
A
N
ILE
380
A
O
LEU
387
A
O
LEU
387
1
A
CL
1396
C
CL
1
A
HOH
2099
D
HOH
1
A
HOH
2137
D
HOH
1
A
HOH
2149
D
HOH
1
A
SER
145
A
SER
145
1
Y
1
A
GLY
146
A
GLY
146
1
Y
1
A
GLU
147
A
GLU
147
1
Y
1
A
GLU
148
A
GLU
148
1
Y
1
A
HIS
149
A
HIS
149
1
Y
1
A
ALA
150
A
ALA
150
1
Y
1
A
VAL
151
A
VAL
151
1
Y
1
A
GLY
152
A
GLY
152
1
Y
1
A
ASN
153
A
ASN
153
1
Y
1
A
ASP
154
A
ASP
154
1
Y
1
A
THR
155
A
THR
155
1
Y
1
A
GLY
156
A
GLY
156
1
Y
1
A
LYS
157
A
LYS
157
1
Y
1
A
HIS
158
A
HIS
158
1
Y
1
A
A
O
O
GLY
HOH
281
2147
2.19
1
9.91
1.10
114.20
124.11
A
A
A
CA
CB
SG
CYS
CYS
CYS
30
30
30
N
1
A
THR
76
69.78
-4.45
1
A
LYS
88
-59.99
-9.08
1
A
LYS
202
55.60
-123.94
1
A
ASN
230
-95.30
54.57
1
A
SER
274
45.68
78.85
1
A
LEU
342
-39.60
-31.57
1
A
GLU
343
-88.27
-100.36
1
A
LYS
344
-160.33
14.15
1
A
ARG
350
80.02
-7.90
1
A
GLU
383
-27.04
-43.38
1
A
PRO
384
-60.84
85.62
PROTEIN_REP.PARAM
PROTEIN.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
30.1
1.49
2.18
0.00
1.49
0.00
-2.98
0.267
0.007
0.222
0.222
2.00
29.29
1322
27450
4.8
91.0
RANDOM
441803.91
0.00
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1OAM
FLAT MODEL
47.9914
.355448
0.32
0.26
5.00
0.24
0.20
2.00
29.29
205
3182
15
0
2962
0.006
1.4
26.4
0.82
3.29
3.00
4.22
4.00
4.76
5.00
6.41
6.00
0.306
0.023
0.273
2.13
174
3130
6
5.3
66.6
11.3
2.000
50.000
1OK8
28677
0.05800
1
25.0000
7.000
95.0
0.39800
2.00
2.07
2.000
1
1.20
75.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
phasing
CNS
refinement
CNS
1.0
Crystal structure of the dengue 2 virus envelope glycoprotein in the postfusion conformation
1
N
N
2
N
N
3
N
N
4
N
N
A
LEU
82
A
LEU
82
HELX_P
A
ASP
87
A
ASP
87
5
2
6
A
ARG
210
A
ARG
210
HELX_P
A
ASP
215
A
ASP
215
1
5
6
A
GLN
256
A
GLN
256
HELX_P
A
LEU
264
A
LEU
264
1
7
9
disulf
2.026
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
30
A
SG
CYS
30
1_555
disulf
2.051
A
CYS
60
A
SG
CYS
60
1_555
A
CYS
121
A
SG
CYS
121
1_555
disulf
2.040
A
CYS
74
A
SG
CYS
74
1_555
A
CYS
105
A
SG
CYS
105
1_555
disulf
2.044
A
CYS
92
A
SG
CYS
92
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.046
A
CYS
185
A
SG
CYS
185
1_555
A
CYS
285
A
SG
CYS
285
1_555
disulf
2.041
A
CYS
302
A
SG
CYS
302
1_555
A
CYS
333
A
SG
CYS
333
1_555
covale
1.453
one
N-Glycosylation
A
ASN
67
A
ND2
ASN
67
1_555
A
NAG
1395
B
C1
NAG
1_555
VIRAL PROTEIN
VIRAL PROTEIN, MEMBRANE FUSION, FLAVIVIRUS, FUSION PEPTIDE, LOW-PH CONFORMATIONAL CHANGE, CLASS 2 FUSION PROTEIN
A
SER
331
A
SER
331
1
A
PRO
332
A
PRO
332
0.60
POLG_DEN2P
UNP
1
P12823
281
674
1OK8
1
394
P12823
A
1
1
394
1
ASP
conflict
GLU
71
1OK8
A
P12823
UNP
351
71
1
ASP
conflict
ASN
390
1OK8
A
P12823
UNP
670
390
5
4
5
4
5
2
3
2
3
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
4
A
ILE
4
A
GLY
5
A
GLY
5
A
VAL
31
A
VAL
31
A
MET
34
A
MET
34
A
THR
40
A
THR
40
A
LYS
51
A
LYS
51
A
LEU
135
A
LEU
135
A
HIS
144
A
HIS
144
A
LYS
160
A
LYS
160
A
ILE
164
A
ILE
164
A
ILE
4
A
ILE
4
A
GLY
5
A
GLY
5
A
VAL
31
A
VAL
31
A
MET
34
A
MET
34
A
THR
40
A
THR
40
A
LYS
51
A
LYS
51
A
ASN
276
A
ASN
276
A
PHE
279
A
PHE
279
A
PHE
11
A
PHE
11
A
GLU
13
A
GLU
13
A
GLY
18
A
GLY
18
A
GLU
26
A
GLU
26
A
HIS
282
A
HIS
282
A
ASP
290
A
ASP
290
A
GLY
179
A
GLY
179
A
PRO
187
A
PRO
187
A
ILE
170
A
ILE
170
A
LEU
175
A
LEU
175
A
PHE
90
A
PHE
90
A
ARG
99
A
ARG
99
A
GLY
109
A
GLY
109
A
ILE
129
A
ILE
129
A
ALA
54
A
ALA
54
A
SER
72
A
SER
72
A
TRP
220
A
TRP
220
A
PRO
222
A
PRO
222
A
PHE
90
A
PHE
90
A
ARG
99
A
ARG
99
A
GLY
109
A
GLY
109
A
ILE
129
A
ILE
129
A
MET
196
A
MET
196
A
MET
201
A
MET
201
A
LYS
204
A
LYS
204
A
HIS
209
A
HIS
209
A
THR
268
A
THR
268
A
ILE
270
A
ILE
270
A
VAL
238
A
VAL
238
A
PHE
240
A
PHE
240
A
VAL
250
A
VAL
250
A
VAL
252
A
VAL
252
A
PHE
306
A
PHE
306
A
GLU
314
A
GLU
314
A
ILE
320
A
ILE
320
A
TYR
326
A
TYR
326
A
VAL
365
A
VAL
365
A
ALA
369
A
ALA
369
A
CYS
333
A
CYS
333
A
LYS
334
A
LYS
334
A
ILE
357
A
ILE
357
A
VAL
358
A
VAL
358
A
PHE
337
A
PHE
337
A
ASP
341
A
ASP
341
A
GLY
374
A
GLY
374
A
ILE
380
A
ILE
380
A
LEU
387
A
LEU
387
A
LYS
393
A
LYS
393
150
P 3 2 1