1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nielsen, J.T. Stein, P.C. Petersen, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C11 H15 N2 O9 P 350.219 n [(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 31 5858 10.1093/NAR/GKG800 14530434 NMR Structure of an Alpha-L-Lna:RNA Hybrid: Structural Implications for Rnase H Recognition 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ALPHA-L-LNA THYMINE MODIFICATIONS AT POSITIONS 2,5 AND 7 2814.843 5'-D(*CP*ATLP*GP*AP*ATLP*AP*ATLP*GP*CP)-3' 1 syn polymer 2855.767 5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3' 1 syn polymer ALPHA-L-LNA no yes (DC)(ATL)(DG)(DA)(ATL)(DA)(ATL)(DG)(DC) CTGATATGC A polydeoxyribonucleotide no no GCAUAUCAG GCAUAUCAG B polyribonucleotide n n n n n n n n n n n n n n n n n n 14.493 1 19 A 1 B 18 -5.479 A_DC1:G18_B 1 -15.562 0.558 0.232 -0.133 21.798 1 20 A 2 B 17 -2.955 A_ATL2:A17_B 2 -23.314 0.068 -0.147 0.141 -3.199 1 19 A 3 B 16 -2.449 A_DG3:C16_B 3 -20.581 -0.433 -0.092 -0.099 9.815 1 20 A 4 B 15 -5.359 A_DA4:U15_B 4 -17.290 -0.183 0.020 0.019 14.606 1 20 A 5 B 14 -9.379 A_ATL5:A14_B 5 -13.369 -0.597 0.223 0.117 3.304 1 20 A 6 B 13 -1.960 A_DA6:U13_B 6 -21.916 0.117 0.196 0.101 5.773 1 20 A 7 B 12 -8.352 A_ATL7:A12_B 7 -19.842 -0.353 0.287 0.052 -2.258 1 19 A 8 B 11 -0.983 A_DG8:C11_B 8 -11.517 -0.445 0.588 -0.053 14.631 1 19 A 9 B 10 -4.150 A_DC9:G10_B 9 -7.584 0.540 0.249 -0.053 2.934 21.892 A A 1 2 8.376 B B 18 17 3.112 3.161 -0.470 -1.265 AA_DC1ATL2:A17G18_BB 1 -2.876 7.621 21.476 -4.478 0.195 2.233 41.396 A A 2 3 35.769 B B 17 16 3.429 23.707 -0.786 -1.240 AA_ATL2DG3:C16A17_BB 2 -7.357 11.100 33.393 -4.212 0.349 2.867 35.113 A A 3 4 5.783 B B 16 15 2.930 3.483 -0.379 -0.401 AA_DG3DA4:U15C16_BB 3 0.901 -1.497 34.934 -1.127 0.748 3.041 26.847 A A 4 5 1.436 B B 15 14 3.162 0.663 0.252 -1.347 AA_DA4ATL5:A14U15_BB 4 -4.621 10.003 26.446 -3.064 -1.680 3.029 42.798 A A 5 6 14.165 B B 14 13 3.308 10.239 -0.154 -0.851 AA_ATL5DA6:U13A14_BB 5 -2.799 3.873 41.520 -2.173 -0.065 3.114 29.099 A A 6 7 -0.625 B B 13 12 3.123 -0.314 0.182 -1.530 AA_DA6ATL7:A12U13_BB 6 -2.413 4.809 28.999 -2.979 -0.867 2.577 39.254 A A 7 8 15.258 B B 12 11 3.069 10.097 -0.032 -1.452 AA_ATL7DG8:C11A12_BB 7 -6.541 9.884 37.434 -3.228 -0.642 3.035 33.271 A A 8 9 -0.756 B B 11 10 3.027 -0.433 -0.045 -0.944 AA_DG8DC9:G10C11_BB 8 1.190 -2.079 33.248 -1.582 0.263 repository Initial release Version format compliance Version format compliance 1 0 2003-10-09 1 1 2011-05-08 1 2 2011-07-13 PDBE Y PDBE 2003-07-23 REL THE STRUCTURE WAS DETERMINED USING 1H,1H-NOES FROM NOESY AND WATERGATE NOESY EXPERIMENTS 20 20 NOESY COSY 100 MM NACL 7.0 pH 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE simulated annealing 16 3 MM NUCLEIC ACID, 100 MM NACL, 10 MM PHOSPHATE BUFFER PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, SEIBEL,SINGH,WEINER,KOLLMAN refinement AMBER structure solution FELIX structure solution AMBER 800 Varian INOVA DC 1 n 1 DC 1 A ATL 2 n 2 ATL 2 A DG 3 n 3 DG 3 A DA 4 n 4 DA 4 A ATL 5 n 5 ATL 5 A DA 6 n 6 DA 6 A ATL 7 n 7 ATL 7 A DG 8 n 8 DG 8 A DC 9 n 9 DC 9 A G 10 n 1 G 10 B C 11 n 2 C 11 B A 12 n 3 A 12 B U 13 n 4 U 13 B A 14 n 5 A 14 B U 15 n 6 U 15 B C 16 n 7 C 16 B A 17 n 8 A 17 B G 18 n 9 G 18 B author_defined_assembly 2 dimeric A ATL 2 A ATL 2 DT A ATL 5 A ATL 5 DT A ATL 7 A ATL 7 DT 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 1 0.082 SIDE CHAIN 1 B A 17 0.112 SIDE CHAIN 2 A DC 1 0.082 SIDE CHAIN 2 B A 17 0.121 SIDE CHAIN 3 A DC 1 0.072 SIDE CHAIN 3 A DC 9 0.065 SIDE CHAIN 3 B A 17 0.102 SIDE CHAIN 4 A DC 1 0.073 SIDE CHAIN 4 B A 17 0.103 SIDE CHAIN 5 A DC 1 0.089 SIDE CHAIN 5 B A 17 0.118 SIDE CHAIN 6 A DC 1 0.070 SIDE CHAIN 6 B A 17 0.101 SIDE CHAIN 7 A DC 1 0.066 SIDE CHAIN 7 B A 17 0.105 SIDE CHAIN 8 A DC 1 0.080 SIDE CHAIN 8 B A 17 0.102 SIDE CHAIN 9 A DC 1 0.069 SIDE CHAIN 9 B A 17 0.109 SIDE CHAIN 10 A DC 1 0.069 SIDE CHAIN 10 B A 17 0.103 SIDE CHAIN 11 A DC 1 0.091 SIDE CHAIN 11 B A 17 0.114 SIDE CHAIN 11 B G 18 0.048 SIDE CHAIN 12 A DC 1 0.063 SIDE CHAIN 12 B A 17 0.109 SIDE CHAIN 13 A DC 1 0.080 SIDE CHAIN 13 B A 17 0.108 SIDE CHAIN 14 A DC 1 0.078 SIDE CHAIN 14 A DG 3 0.067 SIDE CHAIN 14 B A 17 0.120 SIDE CHAIN 15 A DC 1 0.068 SIDE CHAIN 15 B A 17 0.110 SIDE CHAIN 16 A DC 1 0.083 SIDE CHAIN 16 B A 17 0.114 SIDE CHAIN 17 A DC 1 0.076 SIDE CHAIN 17 B A 17 0.094 SIDE CHAIN 17 B G 18 0.062 SIDE CHAIN 18 A DC 1 0.086 SIDE CHAIN 18 B A 17 0.104 SIDE CHAIN 19 A DC 1 0.062 SIDE CHAIN 19 B A 17 0.109 SIDE CHAIN 20 A DC 1 0.083 SIDE CHAIN 20 A DC 9 0.057 SIDE CHAIN 20 B A 17 0.118 SIDE CHAIN 1 4.54 0.60 106.00 110.54 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 2.35 0.30 108.30 110.65 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.63 0.30 108.30 111.93 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 4.19 0.60 106.00 110.19 A A A O4' C4' C3' DG DG DG 8 8 8 N 1 8.24 1.20 102.50 110.74 A A A C3' C2' C1' DG DG DG 8 8 8 N 1 3.11 0.30 108.30 111.41 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 2.35 0.30 108.30 110.65 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 5.13 0.70 108.50 113.63 B B B O4' C1' N1 C C C 11 11 11 N 1 6.01 0.90 109.80 115.81 B B B C5' C4' O4' U U U 15 15 15 N 1 4.77 0.70 108.50 113.27 B B B O4' C1' N1 C C C 16 16 16 N 1 5.91 0.80 101.50 107.41 B B B C3' C2' C1' A A A 17 17 17 N 1 4.43 0.70 108.50 112.93 B B B O4' C1' N9 A A A 17 17 17 N 1 6.14 0.70 108.50 114.64 B B B O4' C1' N9 G G G 18 18 18 N 2 4.79 0.60 106.00 110.79 A A A O4' C4' C3' DG DG DG 3 3 3 N 2 1.88 0.30 108.30 110.18 A A A O4' C1' N9 DA DA DA 4 4 4 N 2 4.84 0.30 108.30 113.14 A A A O4' C1' N9 DA DA DA 6 6 6 N 2 4.75 0.60 106.00 110.75 A A A O4' C4' C3' DG DG DG 8 8 8 N 2 8.37 1.20 102.50 110.87 A A A C3' C2' C1' DG DG DG 8 8 8 N 2 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DG DG DG 8 8 8 N 2 3.19 0.30 108.30 111.49 A A A O4' C1' N1 DC DC DC 9 9 9 N 2 4.97 0.70 108.50 113.47 B B B O4' C1' N1 C C C 11 11 11 N 2 6.05 0.90 109.80 115.85 B B B C5' C4' O4' U U U 15 15 15 N 2 4.55 0.70 108.50 113.05 B B B O4' C1' N1 C C C 16 16 16 N 2 5.48 0.80 101.50 106.98 B B B C3' C2' C1' A A A 17 17 17 N 2 5.95 0.70 108.50 114.45 B B B O4' C1' N9 G G G 18 18 18 N 3 4.32 0.60 106.00 110.32 A A A O4' C4' C3' DG DG DG 3 3 3 N 3 4.15 0.30 108.30 112.45 A A A O4' C1' N9 DA DA DA 6 6 6 N 3 4.43 0.60 106.00 110.43 A A A O4' C4' C3' DG DG DG 8 8 8 N 3 8.48 1.20 102.50 110.98 A A A C3' C2' C1' DG DG DG 8 8 8 N 3 2.31 0.30 108.30 110.61 A A A O4' C1' N9 DG DG DG 8 8 8 N 3 4.51 0.70 108.50 113.01 B B B O4' C1' N1 C C C 11 11 11 N 3 4.85 0.70 108.50 113.35 B B B O4' C1' N1 U U U 15 15 15 N 3 4.34 0.70 108.50 112.84 B B B O4' C1' N1 C C C 16 16 16 N 3 5.48 0.90 109.80 115.28 B B B C5' C4' O4' A A A 17 17 17 N 3 5.87 0.80 101.50 107.37 B B B C3' C2' C1' A A A 17 17 17 N 3 4.26 0.70 108.50 112.76 B B B O4' C1' N9 A A A 17 17 17 N 3 6.08 0.70 108.50 114.58 B B B O4' C1' N9 G G G 18 18 18 N 4 5.48 0.60 106.00 111.48 A A A O4' C4' C3' DG DG DG 3 3 3 N 4 2.21 0.30 108.30 110.51 A A A O4' C1' N9 DA DA DA 4 4 4 N 4 5.43 0.30 108.30 113.73 A A A O4' C1' N9 DA DA DA 6 6 6 N 4 4.29 0.60 106.00 110.29 A A A O4' C4' C3' DG DG DG 8 8 8 N 4 8.43 1.20 102.50 110.93 A A A C3' C2' C1' DG DG DG 8 8 8 N 4 2.74 0.30 108.30 111.04 A A A O4' C1' N9 DG DG DG 8 8 8 N 4 1.88 0.30 108.30 110.18 A A A O4' C1' N1 DC DC DC 9 9 9 N 4 5.43 0.90 109.80 115.23 B B B C5' C4' O4' U U U 13 13 13 N 4 6.37 0.90 109.80 116.17 B B B C5' C4' O4' U U U 15 15 15 N 4 4.60 0.70 108.50 113.10 B B B O4' C1' N1 C C C 16 16 16 N 4 5.85 0.90 109.80 115.65 B B B C5' C4' O4' A A A 17 17 17 N 4 5.31 0.80 101.50 106.81 B B B C3' C2' C1' A A A 17 17 17 N 4 4.65 0.70 108.50 113.15 B B B O4' C1' N9 A A A 17 17 17 N 4 6.61 0.70 108.50 115.11 B B B O4' C1' N9 G G G 18 18 18 N 5 4.83 0.60 106.00 110.83 A A A O4' C4' C3' DG DG DG 3 3 3 N 5 4.96 0.30 108.30 113.26 A A A O4' C1' N9 DA DA DA 6 6 6 N 5 4.44 0.60 106.00 110.44 A A A O4' C4' C3' DG DG DG 8 8 8 N 5 8.39 1.20 102.50 110.89 A A A C3' C2' C1' DG DG DG 8 8 8 N 5 2.92 0.30 108.30 111.22 A A A O4' C1' N9 DG DG DG 8 8 8 N 5 2.52 0.30 108.30 110.82 A A A O4' C1' N1 DC DC DC 9 9 9 N 5 5.77 0.90 109.80 115.57 B B B C5' C4' O4' U U U 15 15 15 N 5 5.44 0.80 101.50 106.94 B B B C3' C2' C1' A A A 17 17 17 N 5 6.34 0.70 108.50 114.84 B B B O4' C1' N9 G G G 18 18 18 N 6 5.06 0.60 106.00 111.06 A A A O4' C4' C3' DG DG DG 3 3 3 N 6 1.96 0.30 108.30 110.26 A A A O4' C1' N9 DA DA DA 4 4 4 N 6 4.43 0.30 108.30 112.73 A A A O4' C1' N9 DA DA DA 6 6 6 N 6 4.44 0.60 106.00 110.44 A A A O4' C4' C3' DG DG DG 8 8 8 N 6 8.46 1.20 102.50 110.96 A A A C3' C2' C1' DG DG DG 8 8 8 N 6 2.73 0.30 108.30 111.03 A A A O4' C1' N9 DG DG DG 8 8 8 N 6 1.96 0.30 108.30 110.26 A A A O4' C1' N1 DC DC DC 9 9 9 N 6 5.45 0.90 109.80 115.25 B B B C5' C4' O4' U U U 13 13 13 N 6 6.21 0.90 109.80 116.01 B B B C5' C4' O4' U U U 15 15 15 N 6 4.40 0.70 108.50 112.90 B B B O4' C1' N1 C C C 16 16 16 N 6 5.71 0.90 109.80 115.51 B B B C5' C4' O4' A A A 17 17 17 N 6 5.72 0.80 101.50 107.22 B B B C3' C2' C1' A A A 17 17 17 N 6 4.61 0.70 108.50 113.11 B B B O4' C1' N9 A A A 17 17 17 N 6 6.50 0.70 108.50 115.00 B B B O4' C1' N9 G G G 18 18 18 N 7 5.44 0.60 106.00 111.44 A A A O4' C4' C3' DG DG DG 3 3 3 N 7 1.86 0.30 108.30 110.16 A A A O4' C1' N9 DA DA DA 4 4 4 N 7 5.14 0.30 108.30 113.44 A A A O4' C1' N9 DA DA DA 6 6 6 N 7 4.35 0.60 106.00 110.35 A A A O4' C4' C3' DG DG DG 8 8 8 N 7 8.44 1.20 102.50 110.94 A A A C3' C2' C1' DG DG DG 8 8 8 N 7 3.05 0.30 108.30 111.35 A A A O4' C1' N9 DG DG DG 8 8 8 N 7 2.17 0.30 108.30 110.47 A A A O4' C1' N1 DC DC DC 9 9 9 N 7 4.79 0.70 108.50 113.29 B B B O4' C1' N1 C C C 11 11 11 N 7 6.41 0.90 109.80 116.21 B B B C5' C4' O4' U U U 15 15 15 N 7 4.55 0.70 108.50 113.05 B B B O4' C1' N1 C C C 16 16 16 N 7 5.73 0.90 109.80 115.53 B B B C5' C4' O4' A A A 17 17 17 N 7 5.52 0.80 101.50 107.02 B B B C3' C2' C1' A A A 17 17 17 N 7 4.33 0.70 108.50 112.83 B B B O4' C1' N9 A A A 17 17 17 N 7 6.26 0.70 108.50 114.76 B B B O4' C1' N9 G G G 18 18 18 N 8 4.78 0.60 106.00 110.78 A A A O4' C4' C3' DG DG DG 3 3 3 N 8 2.14 0.30 108.30 110.44 A A A O4' C1' N9 DA DA DA 4 4 4 N 8 2.77 0.30 108.30 111.07 A A A O4' C1' N9 DA DA DA 6 6 6 N 8 4.46 0.60 106.00 110.46 A A A O4' C4' C3' DG DG DG 8 8 8 N 8 8.60 1.20 102.50 111.10 A A A C3' C2' C1' DG DG DG 8 8 8 N 8 2.64 0.30 108.30 110.94 A A A O4' C1' N9 DG DG DG 8 8 8 N 8 2.03 0.30 108.30 110.33 A A A O4' C1' N1 DC DC DC 9 9 9 N 8 5.87 0.90 109.80 115.67 B B B C5' C4' O4' U U U 15 15 15 N 8 4.82 0.70 108.50 113.32 B B B O4' C1' N1 C C C 16 16 16 N 8 5.54 0.90 109.80 115.34 B B B C5' C4' O4' A A A 17 17 17 N 8 5.21 0.80 101.50 106.71 B B B C3' C2' C1' A A A 17 17 17 N 8 6.56 0.70 108.50 115.06 B B B O4' C1' N9 G G G 18 18 18 N 9 5.14 0.60 106.00 111.14 A A A O4' C4' C3' DG DG DG 3 3 3 N 9 4.59 0.30 108.30 112.89 A A A O4' C1' N9 DA DA DA 6 6 6 N 9 4.47 0.60 106.00 110.47 A A A O4' C4' C3' DG DG DG 8 8 8 N 9 8.40 1.20 102.50 110.90 A A A C3' C2' C1' DG DG DG 8 8 8 N 9 3.49 0.30 108.30 111.79 A A A O4' C1' N9 DG DG DG 8 8 8 N 9 3.08 0.30 108.30 111.38 A A A O4' C1' N1 DC DC DC 9 9 9 N 9 5.13 0.70 108.50 113.63 B B B O4' C1' N1 C C C 11 11 11 N 9 5.99 0.90 109.80 115.79 B B B C5' C4' O4' U U U 15 15 15 N 9 4.67 0.70 108.50 113.17 B B B O4' C1' N1 C C C 16 16 16 N 9 5.57 0.90 109.80 115.37 B B B C5' C4' O4' A A A 17 17 17 N 9 5.68 0.80 101.50 107.18 B B B C3' C2' C1' A A A 17 17 17 N 9 6.17 0.70 108.50 114.67 B B B O4' C1' N9 G G G 18 18 18 N 10 5.11 0.60 106.00 111.11 A A A O4' C4' C3' DG DG DG 3 3 3 N 10 5.04 0.30 108.30 113.34 A A A O4' C1' N9 DA DA DA 6 6 6 N 10 4.19 0.60 106.00 110.19 A A A O4' C4' C3' DG DG DG 8 8 8 N 10 8.32 1.20 102.50 110.82 A A A C3' C2' C1' DG DG DG 8 8 8 N 10 3.14 0.30 108.30 111.44 A A A O4' C1' N9 DG DG DG 8 8 8 N 10 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 9 9 9 N 10 4.38 0.70 108.50 112.88 B B B O4' C1' N1 C C C 11 11 11 N 10 4.80 0.70 108.50 113.30 B B B O4' C1' N1 U U U 15 15 15 N 10 4.81 0.70 108.50 113.31 B B B O4' C1' N1 C C C 16 16 16 N 10 5.69 0.90 109.80 115.49 B B B C5' C4' O4' A A A 17 17 17 N 10 5.80 0.80 101.50 107.30 B B B C3' C2' C1' A A A 17 17 17 N 10 4.80 0.70 108.50 113.30 B B B O4' C1' N9 A A A 17 17 17 N 10 6.61 0.70 108.50 115.11 B B B O4' C1' N9 G G G 18 18 18 N 11 4.95 0.60 106.00 110.95 A A A O4' C4' C3' DG DG DG 3 3 3 N 11 1.88 0.30 108.30 110.18 A A A O4' C1' N9 DA DA DA 4 4 4 N 11 4.00 0.30 108.30 112.30 A A A O4' C1' N9 DA DA DA 6 6 6 N 11 4.60 0.60 106.00 110.60 A A A O4' C4' C3' DG DG DG 8 8 8 N 11 8.50 1.20 102.50 111.00 A A A C3' C2' C1' DG DG DG 8 8 8 N 11 3.17 0.30 108.30 111.47 A A A O4' C1' N9 DG DG DG 8 8 8 N 11 2.43 0.30 108.30 110.73 A A A O4' C1' N1 DC DC DC 9 9 9 N 11 5.92 0.90 109.80 115.72 B B B C5' C4' O4' U U U 15 15 15 N 11 4.45 0.70 108.50 112.95 B B B O4' C1' N1 C C C 16 16 16 N 11 5.83 0.80 101.50 107.33 B B B C3' C2' C1' A A A 17 17 17 N 11 4.27 0.70 108.50 112.77 B B B O4' C1' N9 A A A 17 17 17 N 11 6.29 0.70 108.50 114.79 B B B O4' C1' N9 G G G 18 18 18 N 12 5.39 0.60 106.00 111.39 A A A O4' C4' C3' DG DG DG 3 3 3 N 12 1.80 0.30 108.30 110.10 A A A O4' C1' N9 DA DA DA 4 4 4 N 12 5.38 0.30 108.30 113.68 A A A O4' C1' N9 DA DA DA 6 6 6 N 12 4.41 0.60 106.00 110.41 A A A O4' C4' C3' DG DG DG 8 8 8 N 12 8.29 1.20 102.50 110.79 A A A C3' C2' C1' DG DG DG 8 8 8 N 12 3.39 0.30 108.30 111.69 A A A O4' C1' N9 DG DG DG 8 8 8 N 12 3.27 0.30 108.30 111.57 A A A O4' C1' N1 DC DC DC 9 9 9 N 12 5.41 0.90 109.80 115.21 B B B C5' C4' O4' U U U 13 13 13 N 12 6.39 0.90 109.80 116.19 B B B C5' C4' O4' U U U 15 15 15 N 12 4.67 0.70 108.50 113.17 B B B O4' C1' N1 C C C 16 16 16 N 12 5.82 0.90 109.80 115.62 B B B C5' C4' O4' A A A 17 17 17 N 12 5.79 0.80 101.50 107.29 B B B C3' C2' C1' A A A 17 17 17 N 12 4.38 0.70 108.50 112.88 B B B O4' C1' N9 A A A 17 17 17 N 12 6.23 0.70 108.50 114.73 B B B O4' C1' N9 G G G 18 18 18 N 13 4.72 0.60 106.00 110.72 A A A O4' C4' C3' DG DG DG 3 3 3 N 13 2.18 0.30 108.30 110.48 A A A O4' C1' N9 DA DA DA 4 4 4 N 13 4.40 0.30 108.30 112.70 A A A O4' C1' N9 DA DA DA 6 6 6 N 13 4.35 0.60 106.00 110.35 A A A O4' C4' C3' DG DG DG 8 8 8 N 13 8.43 1.20 102.50 110.93 A A A C3' C2' C1' DG DG DG 8 8 8 N 13 2.97 0.30 108.30 111.27 A A A O4' C1' N9 DG DG DG 8 8 8 N 13 2.24 0.30 108.30 110.54 A A A O4' C1' N1 DC DC DC 9 9 9 N 13 4.67 0.70 108.50 113.17 B B B O4' C1' N1 C C C 11 11 11 N 13 5.77 0.90 109.80 115.57 B B B C5' C4' O4' U U U 15 15 15 N 13 4.59 0.70 108.50 113.09 B B B O4' C1' N1 C C C 16 16 16 N 13 5.46 0.90 109.80 115.26 B B B C5' C4' O4' A A A 17 17 17 N 13 5.46 0.80 101.50 106.96 B B B C3' C2' C1' A A A 17 17 17 N 13 4.21 0.70 108.50 112.71 B B B O4' C1' N9 A A A 17 17 17 N 13 6.36 0.70 108.50 114.86 B B B O4' C1' N9 G G G 18 18 18 N 14 4.53 0.60 106.00 110.53 A A A O4' C4' C3' DG DG DG 3 3 3 N 14 4.54 0.30 108.30 112.84 A A A O4' C1' N9 DA DA DA 6 6 6 N 14 4.39 0.60 106.00 110.39 A A A O4' C4' C3' DG DG DG 8 8 8 N 14 8.36 1.20 102.50 110.86 A A A C3' C2' C1' DG DG DG 8 8 8 N 14 3.45 0.30 108.30 111.75 A A A O4' C1' N9 DG DG DG 8 8 8 N 14 3.01 0.30 108.30 111.31 A A A O4' C1' N1 DC DC DC 9 9 9 N 14 4.97 0.70 108.50 113.47 B B B O4' C1' N1 C C C 11 11 11 N 14 5.49 0.90 109.80 115.29 B B B C5' C4' O4' U U U 13 13 13 N 14 5.90 0.90 109.80 115.70 B B B C5' C4' O4' U U U 15 15 15 N 14 5.76 0.80 101.50 107.26 B B B C3' C2' C1' A A A 17 17 17 N 14 6.23 0.70 108.50 114.73 B B B O4' C1' N9 G G G 18 18 18 N 15 5.03 0.60 106.00 111.03 A A A O4' C4' C3' DG DG DG 3 3 3 N 15 1.82 0.30 108.30 110.12 A A A O4' C1' N9 DA DA DA 4 4 4 N 15 4.74 0.30 108.30 113.04 A A A O4' C1' N9 DA DA DA 6 6 6 N 15 4.41 0.60 106.00 110.41 A A A O4' C4' C3' DG DG DG 8 8 8 N 15 8.44 1.20 102.50 110.94 A A A C3' C2' C1' DG DG DG 8 8 8 N 15 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DG DG DG 8 8 8 N 15 2.18 0.30 108.30 110.48 A A A O4' C1' N1 DC DC DC 9 9 9 N 15 4.22 0.70 108.50 112.72 B B B O4' C1' N1 C C C 11 11 11 N 15 5.42 0.90 109.80 115.22 B B B C5' C4' O4' U U U 13 13 13 N 15 6.01 0.90 109.80 115.81 B B B C5' C4' O4' U U U 15 15 15 N 15 4.65 0.70 108.50 113.15 B B B O4' C1' N1 C C C 16 16 16 N 15 5.65 0.90 109.80 115.45 B B B C5' C4' O4' A A A 17 17 17 N 15 5.77 0.80 101.50 107.27 B B B C3' C2' C1' A A A 17 17 17 N 15 6.12 0.70 108.50 114.62 B B B O4' C1' N9 G G G 18 18 18 N 16 4.66 0.60 106.00 110.66 A A A O4' C4' C3' DG DG DG 3 3 3 N 16 2.23 0.30 108.30 110.53 A A A O4' C1' N9 DA DA DA 4 4 4 N 16 4.66 0.30 108.30 112.96 A A A O4' C1' N9 DA DA DA 6 6 6 N 16 4.46 0.60 106.00 110.46 A A A O4' C4' C3' DG DG DG 8 8 8 N 16 8.54 1.20 102.50 111.04 A A A C3' C2' C1' DG DG DG 8 8 8 N 16 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 8 8 8 N 16 2.18 0.30 108.30 110.48 A A A O4' C1' N1 DC DC DC 9 9 9 N 16 5.90 0.90 109.80 115.70 B B B C5' C4' O4' U U U 15 15 15 N 16 4.41 0.70 108.50 112.91 B B B O4' C1' N1 C C C 16 16 16 N 16 5.91 0.80 101.50 107.41 B B B C3' C2' C1' A A A 17 17 17 N 16 6.17 0.70 108.50 114.67 B B B O4' C1' N9 G G G 18 18 18 N 17 5.31 0.60 106.00 111.31 A A A O4' C4' C3' DG DG DG 3 3 3 N 17 2.04 0.30 108.30 110.34 A A A O4' C1' N9 DA DA DA 4 4 4 N 17 5.41 0.30 108.30 113.71 A A A O4' C1' N9 DA DA DA 6 6 6 N 17 4.64 0.60 106.00 110.64 A A A O4' C4' C3' DG DG DG 8 8 8 N 17 8.43 1.20 102.50 110.93 A A A C3' C2' C1' DG DG DG 8 8 8 N 17 3.31 0.30 108.30 111.61 A A A O4' C1' N9 DG DG DG 8 8 8 N 17 2.76 0.30 108.30 111.06 A A A O4' C1' N1 DC DC DC 9 9 9 N 17 4.75 0.70 108.50 113.25 B B B O4' C1' N1 C C C 11 11 11 N 17 6.16 0.90 109.80 115.96 B B B C5' C4' O4' U U U 15 15 15 N 17 4.33 0.70 108.50 112.83 B B B O4' C1' N1 C C C 16 16 16 N 17 5.07 0.70 108.50 113.57 B B B O4' C1' N9 A A A 17 17 17 N 17 8.18 0.70 108.50 116.68 B B B O4' C1' N9 G G G 18 18 18 N 18 5.46 0.60 106.00 111.46 A A A O4' C4' C3' DG DG DG 3 3 3 N 18 2.17 0.30 108.30 110.47 A A A O4' C1' N9 DA DA DA 4 4 4 N 18 5.59 0.30 108.30 113.89 A A A O4' C1' N9 DA DA DA 6 6 6 N 18 4.32 0.60 106.00 110.32 A A A O4' C4' C3' DG DG DG 8 8 8 N 18 8.25 1.20 102.50 110.75 A A A C3' C2' C1' DG DG DG 8 8 8 N 18 2.99 0.30 108.30 111.29 A A A O4' C1' N9 DG DG DG 8 8 8 N 18 2.43 0.30 108.30 110.73 A A A O4' C1' N1 DC DC DC 9 9 9 N 18 4.21 0.70 108.50 112.71 B B B O4' C1' N1 C C C 11 11 11 N 18 6.42 0.90 109.80 116.22 B B B C5' C4' O4' U U U 15 15 15 N 18 4.50 0.70 108.50 113.00 B B B O4' C1' N1 C C C 16 16 16 N 18 5.65 0.90 109.80 115.45 B B B C5' C4' O4' A A A 17 17 17 N 18 5.15 0.80 101.50 106.65 B B B C3' C2' C1' A A A 17 17 17 N 18 4.21 0.70 108.50 112.71 B B B O4' C1' N9 A A A 17 17 17 N 18 6.46 0.70 108.50 114.96 B B B O4' C1' N9 G G G 18 18 18 N 19 5.41 0.60 106.00 111.41 A A A O4' C4' C3' DG DG DG 3 3 3 N 19 1.87 0.30 108.30 110.17 A A A O4' C1' N9 DA DA DA 4 4 4 N 19 4.00 0.30 108.30 112.30 A A A O4' C1' N9 DA DA DA 6 6 6 N 19 4.38 0.60 106.00 110.38 A A A O4' C4' C3' DG DG DG 8 8 8 N 19 8.14 1.20 102.50 110.64 A A A C3' C2' C1' DG DG DG 8 8 8 N 19 2.94 0.30 108.30 111.24 A A A O4' C1' N9 DG DG DG 8 8 8 N 19 2.53 0.30 108.30 110.83 A A A O4' C1' N1 DC DC DC 9 9 9 N 19 4.65 0.70 108.50 113.15 B B B O4' C1' N1 C C C 11 11 11 N 19 6.31 0.90 109.80 116.11 B B B C5' C4' O4' U U U 15 15 15 N 19 4.29 0.70 108.50 112.79 B B B O4' C1' N1 C C C 16 16 16 N 19 5.35 0.80 101.50 106.85 B B B C3' C2' C1' A A A 17 17 17 N 19 4.34 0.70 108.50 112.84 B B B O4' C1' N9 A A A 17 17 17 N 19 6.48 0.70 108.50 114.98 B B B O4' C1' N9 G G G 18 18 18 N 20 4.94 0.60 106.00 110.94 A A A O4' C4' C3' DG DG DG 3 3 3 N 20 4.81 0.30 108.30 113.11 A A A O4' C1' N9 DA DA DA 6 6 6 N 20 4.37 0.60 106.00 110.37 A A A O4' C4' C3' DG DG DG 8 8 8 N 20 8.24 1.20 102.50 110.74 A A A C3' C2' C1' DG DG DG 8 8 8 N 20 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DG DG DG 8 8 8 N 20 1.99 0.30 108.30 110.29 A A A O4' C1' N1 DC DC DC 9 9 9 N 20 6.26 0.90 109.80 116.06 B B B C5' C4' O4' U U U 15 15 15 N 20 4.24 0.70 108.50 112.74 B B B O4' C1' N1 C C C 16 16 16 N 20 5.90 0.80 101.50 107.40 B B B C3' C2' C1' A A A 17 17 17 N 20 4.29 0.70 108.50 112.79 B B B O4' C1' N9 A A A 17 17 17 N 20 6.22 0.70 108.50 114.72 B B B O4' C1' N9 G G G 18 18 18 N 1 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 2 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 3 A A C5' C4' DA DA 4 4 0.063 0.007 1.512 1.575 N 4 A A C5' C4' DA DA 4 4 0.060 0.007 1.512 1.572 N 5 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 6 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 7 A A C5' C4' DA DA 4 4 0.060 0.007 1.512 1.572 N 8 A A C5' C4' DA DA 4 4 0.063 0.007 1.512 1.575 N 9 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 10 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 11 A A C5' C4' DA DA 4 4 0.063 0.007 1.512 1.575 N 12 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 13 A A C5' C4' DA DA 4 4 0.063 0.007 1.512 1.575 N 14 A A C5' C4' DA DA 4 4 0.058 0.007 1.512 1.570 N 15 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 16 A A C5' C4' DA DA 4 4 0.063 0.007 1.512 1.575 N 17 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 18 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 19 A A C5' C4' DA DA 4 4 0.062 0.007 1.512 1.574 N 20 A A C5' C4' DA DA 4 4 0.061 0.007 1.512 1.573 N 5'-D(*C)-R(P*(ATL))-D(P*GP*A)-R(P*(ATL))-D(P*A)-R(P*(ATL))-D(P*GP*C)-3' NMR structure of an alpha-L-LNA:RNA hybrid 1 N N 2 N N covale 1.617 A DC 1 A O3' DC 1 1_555 A ATL 2 A P ATL 2 1_555 covale 1.605 A ATL 2 A O3' ATL 2 1_555 A DG 3 A P DG 3 1_555 covale 1.628 A DA 4 A O3' DA 4 1_555 A ATL 5 A P ATL 5 1_555 covale 1.619 A ATL 5 A O3' ATL 5 1_555 A DA 6 A P DA 6 1_555 covale 1.622 A DA 6 A O3' DA 6 1_555 A ATL 7 A P ATL 7 1_555 covale 1.627 A ATL 7 A O3' ATL 7 1_555 A DG 8 A P DG 8 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B G 18 B N1 G 9 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B G 18 B O6 G 9 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B G 18 B N2 G 9 1_555 hydrog WATSON-CRICK A ATL 2 A N3 ATL 2 1_555 B A 17 B N1 A 8 1_555 hydrog WATSON-CRICK A ATL 2 A O4 ATL 2 1_555 B A 17 B N6 A 8 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B C 16 B N3 C 7 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B C 16 B O2 C 7 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B C 16 B N4 C 7 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B U 15 B N3 U 6 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B U 15 B O4 U 6 1_555 hydrog WATSON-CRICK A ATL 5 A N3 ATL 5 1_555 B A 14 B N1 A 5 1_555 hydrog WATSON-CRICK A ATL 5 A O4 ATL 5 1_555 B A 14 B N6 A 5 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B U 13 B N3 U 4 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B U 13 B O4 U 4 1_555 hydrog WATSON-CRICK A ATL 7 A N3 ATL 7 1_555 B A 12 B N1 A 3 1_555 hydrog WATSON-CRICK A ATL 7 A O4 ATL 7 1_555 B A 12 B N6 A 3 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B C 11 B N3 C 2 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B C 11 B O2 C 2 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B C 11 B N4 C 2 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B G 10 B N1 G 1 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B G 10 B O6 G 1 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B G 10 B N2 G 1 1_555 DNA-RNA HYBRID DNA-RNA HYBRID, DNA/RNA HYBRID, ALPHA-L-LNA, LNA, RNA, RNASE H, LOCKED NUCLEIC ACID 1OKF PDB 1 1OKF 1OKF PDB 2 1OKF 1 9 1OKF 1 9 1OKF A 1 1 9 10 18 1OKF 10 18 1OKF B 2 1 9 1 P 1