0.020835
0.000000
0.000000
0.000000
0.014579
0.000000
0.000000
0.000000
0.039582
0.00000
0.00000
0.00000
Debreczeni, J.E.
Girmann, B.
Zeeck, A.
Sheldrick, G.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.995
68.593
25.264
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
2125
10.1107/S0907444903018973
14646070
Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
IMAGE PLATE
2002-04-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X13
EMBL/DESY, HAMBURG
0.98
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X13
4842.626
VISCOTOXIN A3
VISCOTOXIN A3 CHAIN, RESIDUES 27-72
2
nat
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
94
nat
water
no
no
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
EUROPEAN MISTLETOE
sample
3972
LEAVES, STEMS
VISCUM ALBUM
1
1.79
31.5
DATA COLLECTED IN-HOUSE. PHASED USING IN-HOUSE SULFUR- SAD DATA
6.50
0.15M AM2SO4, 0.05M CACOD. PH=6.5, 30% PEG8000, 15MM HGCL2, pH 6.50
pdbx_database_proc
pdbx_database_status
refine
diffrn_source
repository
Initial release
Data collection
Database references
Derived calculations
Non-polymer description
Other
Version format compliance
Data collection
Other
Refinement description
Data collection
1
0
2003-12-04
1
1
2016-12-14
1
2
2019-05-22
1
3
2019-07-24
_pdbx_database_status.recvd_author_approval
_refine.pdbx_ls_cross_valid_method
_diffrn_source.pdbx_synchrotron_site
PDBE
Y
PDBE
2003-07-24
REL
1
A
O
HOH
2004
7.22
1
B
O
HOH
2005
6.80
PO4
PHOSPHATE ION
SO4
SULFATE ION
HOH
water
PO4
1047
2
PO4
PO4
1047
A
SO4
1048
3
SO4
SO4
1048
A
PO4
1047
2
PO4
PO4
1047
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
LYS
1
n
1
LYS
1
A
SER
2
n
2
SER
2
A
CYS
3
n
3
CYS
3
A
CYS
4
n
4
CYS
4
A
PRO
5
n
5
PRO
5
A
ASN
6
n
6
ASN
6
A
THR
7
n
7
THR
7
A
THR
8
n
8
THR
8
A
GLY
9
n
9
GLY
9
A
ARG
10
n
10
ARG
10
A
ASN
11
n
11
ASN
11
A
ILE
12
n
12
ILE
12
A
TYR
13
n
13
TYR
13
A
ASN
14
n
14
ASN
14
A
ALA
15
n
15
ALA
15
A
CYS
16
n
16
CYS
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
THR
19
n
19
THR
19
A
GLY
20
n
20
GLY
20
A
ALA
21
n
21
ALA
21
A
PRO
22
n
22
PRO
22
A
ARG
23
n
23
ARG
23
A
PRO
24
n
24
PRO
24
A
THR
25
n
25
THR
25
A
CYS
26
n
26
CYS
26
A
ALA
27
n
27
ALA
27
A
LYS
28
n
28
LYS
28
A
LEU
29
n
29
LEU
29
A
SER
30
n
30
SER
30
A
GLY
31
n
31
GLY
31
A
CYS
32
n
32
CYS
32
A
LYS
33
n
33
LYS
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
SER
38
n
38
SER
38
A
THR
39
n
39
THR
39
A
CYS
40
n
40
CYS
40
A
PRO
41
n
41
PRO
41
A
SER
42
n
42
SER
42
A
ASP
43
n
43
ASP
43
A
TYR
44
n
44
TYR
44
A
PRO
45
n
45
PRO
45
A
LYS
46
n
46
LYS
46
A
LYS
1
n
1
LYS
1
B
SER
2
n
2
SER
2
B
CYS
3
n
3
CYS
3
B
CYS
4
n
4
CYS
4
B
PRO
5
n
5
PRO
5
B
ASN
6
n
6
ASN
6
B
THR
7
n
7
THR
7
B
THR
8
n
8
THR
8
B
GLY
9
n
9
GLY
9
B
ARG
10
n
10
ARG
10
B
ASN
11
n
11
ASN
11
B
ILE
12
n
12
ILE
12
B
TYR
13
n
13
TYR
13
B
ASN
14
n
14
ASN
14
B
ALA
15
n
15
ALA
15
B
CYS
16
n
16
CYS
16
B
ARG
17
n
17
ARG
17
B
LEU
18
n
18
LEU
18
B
THR
19
n
19
THR
19
B
GLY
20
n
20
GLY
20
B
ALA
21
n
21
ALA
21
B
PRO
22
n
22
PRO
22
B
ARG
23
n
23
ARG
23
B
PRO
24
n
24
PRO
24
B
THR
25
n
25
THR
25
B
CYS
26
n
26
CYS
26
B
ALA
27
n
27
ALA
27
B
LYS
28
n
28
LYS
28
B
LEU
29
n
29
LEU
29
B
SER
30
n
30
SER
30
B
GLY
31
n
31
GLY
31
B
CYS
32
n
32
CYS
32
B
LYS
33
n
33
LYS
33
B
ILE
34
n
34
ILE
34
B
ILE
35
n
35
ILE
35
B
SER
36
n
36
SER
36
B
GLY
37
n
37
GLY
37
B
SER
38
n
38
SER
38
B
THR
39
n
39
THR
39
B
CYS
40
n
40
CYS
40
B
PRO
41
n
41
PRO
41
B
SER
42
n
42
SER
42
B
ASP
43
n
43
ASP
43
B
TYR
44
n
44
TYR
44
B
PRO
45
n
45
PRO
45
B
LYS
46
n
46
LYS
46
B
0.1709
0.1920
0.1674
0.1887
0.2391
0.2570
393
454
5.2
5.1
7481
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
3
A
N
CYS
3
A
O
LYS
33
A
O
LYS
33
B
N
CYS
3
B
N
CYS
3
B
O
LYS
33
B
O
LYS
33
1
A
HOH
2001
F
HOH
1
B
HOH
2004
G
HOH
1
B
HOH
2005
G
HOH
1
B
HOH
2006
G
HOH
1
-4.10
0.60
121.00
116.90
B
B
B
CB
CG
CD2
TYR
TYR
TYR
13
13
13
N
0.2570
0.1920
0.1887
1.75
20.0
3115
454
8893
2935
5.1
100.0
RANDOM
1
FREE R-VALUE
0.0
SAD
ENGH AND HUBER
1
0
780.00
1.75
20.0
94
775
15
0
666
0.006
0.021
0.002
0.293
0.029
0.042
0.021
0.067
1.750
68.590
1OKH
8938
0.08920
1
14.3100
5.250
100.0
0.38660
1.75
1.85
3.890
1
4.42
99.7
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHELXD
phasing
SHELXE
refinement
SHELXL-97
VISCOTOXIN A3
Viscotoxin A3 from Viscum album L.
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
4
N
N
A
ASN
6
A
ASN
6
HELX_P
A
THR
19
A
THR
19
1
1
14
A
PRO
22
A
PRO
22
HELX_P
A
GLY
31
A
GLY
31
1
2
10
B
ASN
6
B
ASN
6
HELX_P
B
THR
19
B
THR
19
1
3
14
B
PRO
22
B
PRO
22
HELX_P
B
GLY
31
B
GLY
31
1
4
10
disulf
2.013
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.044
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
32
A
SG
CYS
32
1_555
disulf
2.009
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
26
A
SG
CYS
26
1_555
disulf
2.015
B
CYS
3
B
SG
CYS
3
1_555
B
CYS
40
B
SG
CYS
40
1_555
disulf
2.012
B
CYS
4
B
SG
CYS
4
1_555
B
CYS
32
B
SG
CYS
32
1_555
disulf
2.036
B
CYS
16
B
SG
CYS
16
1_555
B
CYS
26
B
SG
CYS
26
1_555
TOXIN
THIONIN, TOXIN, PLANT DEFENSE
given
0.199860
-0.978370
-0.053390
-0.979820
-0.199430
-0.013380
0.002450
0.054990
-0.998480
-0.01244
0.50519
30.12263
THN3_VISAL
UNP
1
P01538
27
72
1OKH
1
46
P01538
A
1
1
46
27
72
1OKH
1
46
P01538
B
1
1
46
2
2
anti-parallel
anti-parallel
A
SER
2
A
SER
2
A
CYS
3
A
CYS
3
A
LYS
33
A
LYS
33
A
ILE
34
A
ILE
34
B
SER
2
B
SER
2
B
CYS
3
B
CYS
3
B
LYS
33
B
LYS
33
B
ILE
34
B
ILE
34
BINDING SITE FOR RESIDUE PO4 A 1047
Software
9
BINDING SITE FOR RESIDUE SO4 A 1048
Software
8
BINDING SITE FOR RESIDUE PO4 B 1047
Software
3
A
LYS
1
A
LYS
1
9
1_555
A
SER
2
A
SER
2
9
1_555
A
TYR
13
A
TYR
13
9
1_555
A
ARG
23
A
ARG
23
9
1_555
A
HOH
2021
F
HOH
9
1_555
A
HOH
2052
F
HOH
9
1_555
A
HOH
2053
F
HOH
9
1_555
A
HOH
2054
F
HOH
9
1_555
B
SER
42
B
SER
42
9
3_456
A
SER
38
A
SER
38
8
1_555
A
THR
39
A
THR
39
8
1_555
A
HOH
2043
F
HOH
8
1_555
B
ARG
17
B
ARG
17
8
4_556
B
PRO
22
B
PRO
22
8
4_556
B
ARG
23
B
ARG
23
8
4_556
B
PRO
24
B
PRO
24
8
4_556
B
HOH
2030
G
HOH
8
3_456
B
SER
2
B
SER
2
3
1_555
B
TYR
13
B
TYR
13
3
1_555
B
ARG
23
B
ARG
23
3
1_555
18
P 21 21 2