1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Clore, G.M.
Omichinski, J.G.
Gronenborn, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
265
386
391
8023159
High-resolution structure of the oligomerization domain of p53 by multidimensional NMR.
1994
10.2210/pdb1olg/pdb
pdb_00001olg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4948.632
TUMOR SUPPRESSOR P53 (OLIGOMERIZATION DOMAIN)
4
man
polymer
no
no
KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG
KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1995-01-26
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1994-06-13
REL
REL
1
THE 3D STRUCTURE OF THE OLIGOMERIZATION DOMAIN (RESIDUES
319 - 360) OF P53 BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED
AND -FILTERED NMR IS BASED ON 3824 EXPERIMENTAL RESTRAINTS
COMPRISING THE FOLLOWING INTRA- AND INTER-SUBUNIT
RESTRAINTS: (A) INTRASUBUNIT: 840 SEQUENTIAL (|I-J|=1),
744 SHORT RANGE (1 < |I-J| >=5) AND 72 LONG RANGE
(|I-J| >5) INTERRESIDUES AND INTRARESIDUE APPROXIMATE
INTERPROTON DISTANCE RESTRAINTS, 136 DISTANCE RESTRAINTS
FOR 68 HYDROGEN BONDS, 268 TORSION ANGLE (144 PHI, 104 CHI1
AND 20 CHI2) RESTRAINTS, AND 144 THREE-BOND HN-HA COUPLING
CONSTANT RESTRAINTS. (B) INTERSUBUNIT: 72 A-B/C-D,
758 A-C/B-D, 10 A-D/B-C APPROXIMATE INTERPROTON DISTANCE
RESTRAINTS, AND 24 DISTANCE RESTRAINTS FOR 12 HYDROGEN
BONDS INVOLVING THE A-C/B-D SUBUNITS. IN ADDITION, THERE
ARE A TOTAL OF 38 CALPHA AND 38 CB CHEMICAL SHIFT
RESTRAINTS PER SUBUNIT THAT HAVE BEEN INCORPORATED
INTO THE REFINEMENT [J. KUSZWESKI, J. QIN, A.M. GRONENBORN
AND G.M. CLORE, J. MAGN RESON. SER IN PRESS (1994)]
THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC
MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. AND
GRONENBORN, A.M. (1988) FEBS LETT. 29, 317-324. ALL
STRUCTURAL STATISTICS ARE GIVEN IN THE JRNL REFERENCE.
THE STRUCTURE PRESENTED IN THIS ENTRY IS THE RESTRAINED
MINIMIZED AVERAGE STRUCTURE (SA)R. THIS IS OBTAINED BY
FIRST AVERAGING THE COORDINATES OF THE INDIVIDUAL 35
DYNAMICAL SIMULATED ANNEALING SA STRUCTURES BEST FITTED TO
RESIDUES 324 - 356 OF ALL FOUR SUBUNITS AND SUBJECTING THE
RESULTING COORDINATES TO RESTRAINED MINIMIZATION. THE
QUANTITY PRESENTED IN COLUMNS 61 - 66 IN THIS SET OF
COORDINATES (THE B-FACTOR FIELD IN X-RAY STRUCTURES) GIVES
THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SA
STRUCTURES AND THE MEAN STRUCTURE. THE NUMBERS IN COLUMNS
61 - 66 OF THE INDIVIDUAL STRUCTURES HAVE NO MEANING. NOTE
THAT RESIDUES 319 - 323 AT THE N-TERMINUS AND RESIDUES 357
- 360 AT THE C-TERMINUS ARE DISORDERED. THE SET OF 35
STRUCTURES IS PRESENTED IN PROTEIN DATA BANK ENTRY 1OLH.
LYS
319
n
1
LYS
319
A
LYS
320
n
2
LYS
320
A
LYS
321
n
3
LYS
321
A
PRO
322
n
4
PRO
322
A
LEU
323
n
5
LEU
323
A
ASP
324
n
6
ASP
324
A
GLY
325
n
7
GLY
325
A
GLU
326
n
8
GLU
326
A
TYR
327
n
9
TYR
327
A
PHE
328
n
10
PHE
328
A
THR
329
n
11
THR
329
A
LEU
330
n
12
LEU
330
A
GLN
331
n
13
GLN
331
A
ILE
332
n
14
ILE
332
A
ARG
333
n
15
ARG
333
A
GLY
334
n
16
GLY
334
A
ARG
335
n
17
ARG
335
A
GLU
336
n
18
GLU
336
A
ARG
337
n
19
ARG
337
A
PHE
338
n
20
PHE
338
A
GLU
339
n
21
GLU
339
A
MET
340
n
22
MET
340
A
PHE
341
n
23
PHE
341
A
ARG
342
n
24
ARG
342
A
GLU
343
n
25
GLU
343
A
LEU
344
n
26
LEU
344
A
ASN
345
n
27
ASN
345
A
GLU
346
n
28
GLU
346
A
ALA
347
n
29
ALA
347
A
LEU
348
n
30
LEU
348
A
GLU
349
n
31
GLU
349
A
LEU
350
n
32
LEU
350
A
LYS
351
n
33
LYS
351
A
ASP
352
n
34
ASP
352
A
ALA
353
n
35
ALA
353
A
GLN
354
n
36
GLN
354
A
ALA
355
n
37
ALA
355
A
GLY
356
n
38
GLY
356
A
LYS
357
n
39
LYS
357
A
GLU
358
n
40
GLU
358
A
PRO
359
n
41
PRO
359
A
GLY
360
n
42
GLY
360
A
LYS
319
n
1
LYS
319
B
LYS
320
n
2
LYS
320
B
LYS
321
n
3
LYS
321
B
PRO
322
n
4
PRO
322
B
LEU
323
n
5
LEU
323
B
ASP
324
n
6
ASP
324
B
GLY
325
n
7
GLY
325
B
GLU
326
n
8
GLU
326
B
TYR
327
n
9
TYR
327
B
PHE
328
n
10
PHE
328
B
THR
329
n
11
THR
329
B
LEU
330
n
12
LEU
330
B
GLN
331
n
13
GLN
331
B
ILE
332
n
14
ILE
332
B
ARG
333
n
15
ARG
333
B
GLY
334
n
16
GLY
334
B
ARG
335
n
17
ARG
335
B
GLU
336
n
18
GLU
336
B
ARG
337
n
19
ARG
337
B
PHE
338
n
20
PHE
338
B
GLU
339
n
21
GLU
339
B
MET
340
n
22
MET
340
B
PHE
341
n
23
PHE
341
B
ARG
342
n
24
ARG
342
B
GLU
343
n
25
GLU
343
B
LEU
344
n
26
LEU
344
B
ASN
345
n
27
ASN
345
B
GLU
346
n
28
GLU
346
B
ALA
347
n
29
ALA
347
B
LEU
348
n
30
LEU
348
B
GLU
349
n
31
GLU
349
B
LEU
350
n
32
LEU
350
B
LYS
351
n
33
LYS
351
B
ASP
352
n
34
ASP
352
B
ALA
353
n
35
ALA
353
B
GLN
354
n
36
GLN
354
B
ALA
355
n
37
ALA
355
B
GLY
356
n
38
GLY
356
B
LYS
357
n
39
LYS
357
B
GLU
358
n
40
GLU
358
B
PRO
359
n
41
PRO
359
B
GLY
360
n
42
GLY
360
B
LYS
319
n
1
LYS
319
C
LYS
320
n
2
LYS
320
C
LYS
321
n
3
LYS
321
C
PRO
322
n
4
PRO
322
C
LEU
323
n
5
LEU
323
C
ASP
324
n
6
ASP
324
C
GLY
325
n
7
GLY
325
C
GLU
326
n
8
GLU
326
C
TYR
327
n
9
TYR
327
C
PHE
328
n
10
PHE
328
C
THR
329
n
11
THR
329
C
LEU
330
n
12
LEU
330
C
GLN
331
n
13
GLN
331
C
ILE
332
n
14
ILE
332
C
ARG
333
n
15
ARG
333
C
GLY
334
n
16
GLY
334
C
ARG
335
n
17
ARG
335
C
GLU
336
n
18
GLU
336
C
ARG
337
n
19
ARG
337
C
PHE
338
n
20
PHE
338
C
GLU
339
n
21
GLU
339
C
MET
340
n
22
MET
340
C
PHE
341
n
23
PHE
341
C
ARG
342
n
24
ARG
342
C
GLU
343
n
25
GLU
343
C
LEU
344
n
26
LEU
344
C
ASN
345
n
27
ASN
345
C
GLU
346
n
28
GLU
346
C
ALA
347
n
29
ALA
347
C
LEU
348
n
30
LEU
348
C
GLU
349
n
31
GLU
349
C
LEU
350
n
32
LEU
350
C
LYS
351
n
33
LYS
351
C
ASP
352
n
34
ASP
352
C
ALA
353
n
35
ALA
353
C
GLN
354
n
36
GLN
354
C
ALA
355
n
37
ALA
355
C
GLY
356
n
38
GLY
356
C
LYS
357
n
39
LYS
357
C
GLU
358
n
40
GLU
358
C
PRO
359
n
41
PRO
359
C
GLY
360
n
42
GLY
360
C
LYS
319
n
1
LYS
319
D
LYS
320
n
2
LYS
320
D
LYS
321
n
3
LYS
321
D
PRO
322
n
4
PRO
322
D
LEU
323
n
5
LEU
323
D
ASP
324
n
6
ASP
324
D
GLY
325
n
7
GLY
325
D
GLU
326
n
8
GLU
326
D
TYR
327
n
9
TYR
327
D
PHE
328
n
10
PHE
328
D
THR
329
n
11
THR
329
D
LEU
330
n
12
LEU
330
D
GLN
331
n
13
GLN
331
D
ILE
332
n
14
ILE
332
D
ARG
333
n
15
ARG
333
D
GLY
334
n
16
GLY
334
D
ARG
335
n
17
ARG
335
D
GLU
336
n
18
GLU
336
D
ARG
337
n
19
ARG
337
D
PHE
338
n
20
PHE
338
D
GLU
339
n
21
GLU
339
D
MET
340
n
22
MET
340
D
PHE
341
n
23
PHE
341
D
ARG
342
n
24
ARG
342
D
GLU
343
n
25
GLU
343
D
LEU
344
n
26
LEU
344
D
ASN
345
n
27
ASN
345
D
GLU
346
n
28
GLU
346
D
ALA
347
n
29
ALA
347
D
LEU
348
n
30
LEU
348
D
GLU
349
n
31
GLU
349
D
LEU
350
n
32
LEU
350
D
LYS
351
n
33
LYS
351
D
ASP
352
n
34
ASP
352
D
ALA
353
n
35
ALA
353
D
GLN
354
n
36
GLN
354
D
ALA
355
n
37
ALA
355
D
GLY
356
n
38
GLY
356
D
LYS
357
n
39
LYS
357
D
GLU
358
n
40
GLU
358
D
PRO
359
n
41
PRO
359
D
GLY
360
n
42
GLY
360
D
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
332
A
O
ILE
14
C
N
PHE
328
C
N
PHE
10
B
O
ILE
332
B
O
ILE
14
D
N
PHE
328
D
N
PHE
10
1
A
LYS
320
68.94
-74.36
1
A
LYS
321
67.72
135.74
1
A
GLU
326
-58.70
-174.99
1
A
PHE
328
-112.87
-165.33
1
B
LYS
320
69.83
-74.65
1
B
LYS
321
67.89
135.74
1
B
GLU
326
-59.01
-175.08
1
B
PHE
328
-113.04
-165.39
1
C
LYS
320
57.32
116.35
1
C
LYS
321
-161.07
-127.71
1
C
PRO
322
-40.58
-137.97
1
C
GLU
326
-57.97
-173.91
1
C
PHE
328
-113.14
-162.84
1
D
LYS
320
69.86
-75.43
1
D
LYS
321
68.29
135.67
1
D
GLU
326
-58.62
-174.99
1
D
PHE
328
-112.99
-165.46
HIGH-RESOLUTION SOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR
1
N
N
1
N
N
1
N
N
1
N
N
A
GLY
334
A
GLY
16
HELX_P
A
GLY
356
A
GLY
38
1
1
23
B
GLY
334
B
GLY
16
HELX_P
B
GLY
356
B
GLY
38
1
2
23
C
GLY
334
C
GLY
16
HELX_P
C
GLY
356
C
GLY
38
1
3
23
D
GLY
334
D
GLY
16
HELX_P
D
GLY
356
D
GLY
38
1
4
23
ANTI-ONCOGENE
ANTI-ONCOGENE
P53_HUMAN
UNP
1
1
P04637
MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAP
TPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAM
AIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS
SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK
KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
319
360
1OLG
319
360
P04637
A
1
1
42
319
360
1OLG
319
360
P04637
B
1
1
42
319
360
1OLG
319
360
P04637
C
1
1
42
319
360
1OLG
319
360
P04637
D
1
1
42
2
2
anti-parallel
anti-parallel
A
TYR
327
A
TYR
9
A
ARG
333
A
ARG
15
C
TYR
327
C
TYR
9
C
ARG
333
C
ARG
15
B
TYR
327
B
TYR
9
B
ARG
333
B
ARG
15
D
TYR
327
D
TYR
9
D
ARG
333
D
ARG
15
1
P 1