1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Clore, G.M. Omichinski, J.G. Gronenborn, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking US Science SCIEAS 0038 0036-8075 265 386 391 8023159 High-resolution structure of the oligomerization domain of p53 by multidimensional NMR. 1994 10.2210/pdb1olg/pdb pdb_00001olg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4948.632 TUMOR SUPPRESSOR P53 (OLIGOMERIZATION DOMAIN) 4 man polymer no no KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG KKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1995-01-26 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1994-06-13 REL REL 1 THE 3D STRUCTURE OF THE OLIGOMERIZATION DOMAIN (RESIDUES 319 - 360) OF P53 BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR IS BASED ON 3824 EXPERIMENTAL RESTRAINTS COMPRISING THE FOLLOWING INTRA- AND INTER-SUBUNIT RESTRAINTS: (A) INTRASUBUNIT: 840 SEQUENTIAL (|I-J|=1), 744 SHORT RANGE (1 < |I-J| >=5) AND 72 LONG RANGE (|I-J| >5) INTERRESIDUES AND INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS, 136 DISTANCE RESTRAINTS FOR 68 HYDROGEN BONDS, 268 TORSION ANGLE (144 PHI, 104 CHI1 AND 20 CHI2) RESTRAINTS, AND 144 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS. (B) INTERSUBUNIT: 72 A-B/C-D, 758 A-C/B-D, 10 A-D/B-C APPROXIMATE INTERPROTON DISTANCE RESTRAINTS, AND 24 DISTANCE RESTRAINTS FOR 12 HYDROGEN BONDS INVOLVING THE A-C/B-D SUBUNITS. IN ADDITION, THERE ARE A TOTAL OF 38 CALPHA AND 38 CB CHEMICAL SHIFT RESTRAINTS PER SUBUNIT THAT HAVE BEEN INCORPORATED INTO THE REFINEMENT [J. KUSZWESKI, J. QIN, A.M. GRONENBORN AND G.M. CLORE, J. MAGN RESON. SER IN PRESS (1994)] THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. AND GRONENBORN, A.M. (1988) FEBS LETT. 29, 317-324. ALL STRUCTURAL STATISTICS ARE GIVEN IN THE JRNL REFERENCE. THE STRUCTURE PRESENTED IN THIS ENTRY IS THE RESTRAINED MINIMIZED AVERAGE STRUCTURE (SA)R. THIS IS OBTAINED BY FIRST AVERAGING THE COORDINATES OF THE INDIVIDUAL 35 DYNAMICAL SIMULATED ANNEALING SA STRUCTURES BEST FITTED TO RESIDUES 324 - 356 OF ALL FOUR SUBUNITS AND SUBJECTING THE RESULTING COORDINATES TO RESTRAINED MINIMIZATION. THE QUANTITY PRESENTED IN COLUMNS 61 - 66 IN THIS SET OF COORDINATES (THE B-FACTOR FIELD IN X-RAY STRUCTURES) GIVES THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SA STRUCTURES AND THE MEAN STRUCTURE. THE NUMBERS IN COLUMNS 61 - 66 OF THE INDIVIDUAL STRUCTURES HAVE NO MEANING. NOTE THAT RESIDUES 319 - 323 AT THE N-TERMINUS AND RESIDUES 357 - 360 AT THE C-TERMINUS ARE DISORDERED. THE SET OF 35 STRUCTURES IS PRESENTED IN PROTEIN DATA BANK ENTRY 1OLH. LYS 319 n 1 LYS 319 A LYS 320 n 2 LYS 320 A LYS 321 n 3 LYS 321 A PRO 322 n 4 PRO 322 A LEU 323 n 5 LEU 323 A ASP 324 n 6 ASP 324 A GLY 325 n 7 GLY 325 A GLU 326 n 8 GLU 326 A TYR 327 n 9 TYR 327 A PHE 328 n 10 PHE 328 A THR 329 n 11 THR 329 A LEU 330 n 12 LEU 330 A GLN 331 n 13 GLN 331 A ILE 332 n 14 ILE 332 A ARG 333 n 15 ARG 333 A GLY 334 n 16 GLY 334 A ARG 335 n 17 ARG 335 A GLU 336 n 18 GLU 336 A ARG 337 n 19 ARG 337 A PHE 338 n 20 PHE 338 A GLU 339 n 21 GLU 339 A MET 340 n 22 MET 340 A PHE 341 n 23 PHE 341 A ARG 342 n 24 ARG 342 A GLU 343 n 25 GLU 343 A LEU 344 n 26 LEU 344 A ASN 345 n 27 ASN 345 A GLU 346 n 28 GLU 346 A ALA 347 n 29 ALA 347 A LEU 348 n 30 LEU 348 A GLU 349 n 31 GLU 349 A LEU 350 n 32 LEU 350 A LYS 351 n 33 LYS 351 A ASP 352 n 34 ASP 352 A ALA 353 n 35 ALA 353 A GLN 354 n 36 GLN 354 A ALA 355 n 37 ALA 355 A GLY 356 n 38 GLY 356 A LYS 357 n 39 LYS 357 A GLU 358 n 40 GLU 358 A PRO 359 n 41 PRO 359 A GLY 360 n 42 GLY 360 A LYS 319 n 1 LYS 319 B LYS 320 n 2 LYS 320 B LYS 321 n 3 LYS 321 B PRO 322 n 4 PRO 322 B LEU 323 n 5 LEU 323 B ASP 324 n 6 ASP 324 B GLY 325 n 7 GLY 325 B GLU 326 n 8 GLU 326 B TYR 327 n 9 TYR 327 B PHE 328 n 10 PHE 328 B THR 329 n 11 THR 329 B LEU 330 n 12 LEU 330 B GLN 331 n 13 GLN 331 B ILE 332 n 14 ILE 332 B ARG 333 n 15 ARG 333 B GLY 334 n 16 GLY 334 B ARG 335 n 17 ARG 335 B GLU 336 n 18 GLU 336 B ARG 337 n 19 ARG 337 B PHE 338 n 20 PHE 338 B GLU 339 n 21 GLU 339 B MET 340 n 22 MET 340 B PHE 341 n 23 PHE 341 B ARG 342 n 24 ARG 342 B GLU 343 n 25 GLU 343 B LEU 344 n 26 LEU 344 B ASN 345 n 27 ASN 345 B GLU 346 n 28 GLU 346 B ALA 347 n 29 ALA 347 B LEU 348 n 30 LEU 348 B GLU 349 n 31 GLU 349 B LEU 350 n 32 LEU 350 B LYS 351 n 33 LYS 351 B ASP 352 n 34 ASP 352 B ALA 353 n 35 ALA 353 B GLN 354 n 36 GLN 354 B ALA 355 n 37 ALA 355 B GLY 356 n 38 GLY 356 B LYS 357 n 39 LYS 357 B GLU 358 n 40 GLU 358 B PRO 359 n 41 PRO 359 B GLY 360 n 42 GLY 360 B LYS 319 n 1 LYS 319 C LYS 320 n 2 LYS 320 C LYS 321 n 3 LYS 321 C PRO 322 n 4 PRO 322 C LEU 323 n 5 LEU 323 C ASP 324 n 6 ASP 324 C GLY 325 n 7 GLY 325 C GLU 326 n 8 GLU 326 C TYR 327 n 9 TYR 327 C PHE 328 n 10 PHE 328 C THR 329 n 11 THR 329 C LEU 330 n 12 LEU 330 C GLN 331 n 13 GLN 331 C ILE 332 n 14 ILE 332 C ARG 333 n 15 ARG 333 C GLY 334 n 16 GLY 334 C ARG 335 n 17 ARG 335 C GLU 336 n 18 GLU 336 C ARG 337 n 19 ARG 337 C PHE 338 n 20 PHE 338 C GLU 339 n 21 GLU 339 C MET 340 n 22 MET 340 C PHE 341 n 23 PHE 341 C ARG 342 n 24 ARG 342 C GLU 343 n 25 GLU 343 C LEU 344 n 26 LEU 344 C ASN 345 n 27 ASN 345 C GLU 346 n 28 GLU 346 C ALA 347 n 29 ALA 347 C LEU 348 n 30 LEU 348 C GLU 349 n 31 GLU 349 C LEU 350 n 32 LEU 350 C LYS 351 n 33 LYS 351 C ASP 352 n 34 ASP 352 C ALA 353 n 35 ALA 353 C GLN 354 n 36 GLN 354 C ALA 355 n 37 ALA 355 C GLY 356 n 38 GLY 356 C LYS 357 n 39 LYS 357 C GLU 358 n 40 GLU 358 C PRO 359 n 41 PRO 359 C GLY 360 n 42 GLY 360 C LYS 319 n 1 LYS 319 D LYS 320 n 2 LYS 320 D LYS 321 n 3 LYS 321 D PRO 322 n 4 PRO 322 D LEU 323 n 5 LEU 323 D ASP 324 n 6 ASP 324 D GLY 325 n 7 GLY 325 D GLU 326 n 8 GLU 326 D TYR 327 n 9 TYR 327 D PHE 328 n 10 PHE 328 D THR 329 n 11 THR 329 D LEU 330 n 12 LEU 330 D GLN 331 n 13 GLN 331 D ILE 332 n 14 ILE 332 D ARG 333 n 15 ARG 333 D GLY 334 n 16 GLY 334 D ARG 335 n 17 ARG 335 D GLU 336 n 18 GLU 336 D ARG 337 n 19 ARG 337 D PHE 338 n 20 PHE 338 D GLU 339 n 21 GLU 339 D MET 340 n 22 MET 340 D PHE 341 n 23 PHE 341 D ARG 342 n 24 ARG 342 D GLU 343 n 25 GLU 343 D LEU 344 n 26 LEU 344 D ASN 345 n 27 ASN 345 D GLU 346 n 28 GLU 346 D ALA 347 n 29 ALA 347 D LEU 348 n 30 LEU 348 D GLU 349 n 31 GLU 349 D LEU 350 n 32 LEU 350 D LYS 351 n 33 LYS 351 D ASP 352 n 34 ASP 352 D ALA 353 n 35 ALA 353 D GLN 354 n 36 GLN 354 D ALA 355 n 37 ALA 355 D GLY 356 n 38 GLY 356 D LYS 357 n 39 LYS 357 D GLU 358 n 40 GLU 358 D PRO 359 n 41 PRO 359 D GLY 360 n 42 GLY 360 D author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 332 A O ILE 14 C N PHE 328 C N PHE 10 B O ILE 332 B O ILE 14 D N PHE 328 D N PHE 10 1 A LYS 320 68.94 -74.36 1 A LYS 321 67.72 135.74 1 A GLU 326 -58.70 -174.99 1 A PHE 328 -112.87 -165.33 1 B LYS 320 69.83 -74.65 1 B LYS 321 67.89 135.74 1 B GLU 326 -59.01 -175.08 1 B PHE 328 -113.04 -165.39 1 C LYS 320 57.32 116.35 1 C LYS 321 -161.07 -127.71 1 C PRO 322 -40.58 -137.97 1 C GLU 326 -57.97 -173.91 1 C PHE 328 -113.14 -162.84 1 D LYS 320 69.86 -75.43 1 D LYS 321 68.29 135.67 1 D GLU 326 -58.62 -174.99 1 D PHE 328 -112.99 -165.46 HIGH-RESOLUTION SOLUTION STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF P53 BY MULTI-DIMENSIONAL NMR 1 N N 1 N N 1 N N 1 N N A GLY 334 A GLY 16 HELX_P A GLY 356 A GLY 38 1 1 23 B GLY 334 B GLY 16 HELX_P B GLY 356 B GLY 38 1 2 23 C GLY 334 C GLY 16 HELX_P C GLY 356 C GLY 38 1 3 23 D GLY 334 D GLY 16 HELX_P D GLY 356 D GLY 38 1 4 23 ANTI-ONCOGENE ANTI-ONCOGENE P53_HUMAN UNP 1 1 P04637 MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAAPPVAPAPAAP TPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAM AIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKK KPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD 319 360 1OLG 319 360 P04637 A 1 1 42 319 360 1OLG 319 360 P04637 B 1 1 42 319 360 1OLG 319 360 P04637 C 1 1 42 319 360 1OLG 319 360 P04637 D 1 1 42 2 2 anti-parallel anti-parallel A TYR 327 A TYR 9 A ARG 333 A ARG 15 C TYR 327 C TYR 9 C ARG 333 C ARG 15 B TYR 327 B TYR 9 B ARG 333 B ARG 15 D TYR 327 D TYR 9 D ARG 333 D ARG 15 1 P 1