0.011010
0.006356
0.000000
0.000000
0.012713
0.000000
0.000000
0.000000
0.004911
0.00000
0.00000
0.00000
Guasch, A.
Lucas, M.
Moncalian, G.
Cabezas, M.
Perez-Luque, R.
Gomis-Ruth, F.X.
de la Cruz, F.
Coll, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
90.830
90.830
203.630
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
10
1002
1010
10.1038/nsb1017
14625590
Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC.
2003
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
295
1163
1172
10.1006/jmbi.1999.3425
Two active-site tyrosyl residues of protein TrwC act sequentially at the origin of transfer
during plasmid R388 conjugation
2000
UK
MOL.MICROBIOL.
MOMIEE
2007
0950-382X
45
1
8
10.1046/j.1365-2958.2002.03014.x
Bacterial conjugation: a two-step mechanism for DNA transport.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110.0
1
1
CCD
2002-03-08
ADSC QUANTUM 4
diamond
MAD
M
x-ray
1
0.9795
1.0
0.9798
1.0
0.9796
1.0
0.9333
1.0
ID14-4
ESRF
0.9795, 0.9798, 0.9796
SYNCHROTRON
ESRF BEAMLINE ID14-4
ID14-4
ESRF
0.9333
SYNCHROTRON
ESRF BEAMLINE ID14-4
DNA FORMING A CRUCIFORM ARM
7714.970
DNA OLIGONUCLEOTIDE
1
syn
polymer
33082.414
trwC protein
N-terminal relaxase domain
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
256
nat
water
no
no
(DG)(DC)(DG)(DC)(DA)(DC)(DC)(DG)(DA)(DA)(DA)(DG)(DG)(DT)(DG)(DC)(DG)(DT)(DA)(DT)
(DT)(DG)(DT)(DC)(DT)
GCGCACCGAAAGGTGCGTATTGTCT
B
polydeoxyribonucleotide
no
yes
(MSE)LSH(MSE)VLTRQDIGRAASYYEDGADDYYAKDGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRI
(MSE)RSATRQDSKERIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEARAQARQKIQGKTRIETTGNLVI
GKFRHETSRERDPQLHTHAVILN(MSE)TKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQKLGYQLRYGKDGNFDL
AHIDRQQIEGFSKRTEQIAEWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS
MLSHMVLTRQDIGRAASYYEDGADDYYAKDGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMRSATRQDSKE
RIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQL
HTHAVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQKLGYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIA
EWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
2
2.95
58.30
VAPOR DIFFUSION, HANGING DROP
4.6
25% PEGMM 2000, 0.2 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
(NH4)2(SO4)
1
(Na)(C2H3O2)
1
PEG
1
(Na)(C2H3O2)
2
-12.784
1
19
B
3
B
16
4.386
B_DG3:DC16_B
1
-5.733
-0.127
-0.037
-0.018
-11.645
1
19
B
4
B
15
2.113
B_DC4:DG15_B
2
-15.795
0.177
0.438
-0.150
9.129
1
20
B
5
B
14
7.438
B_DA5:DT14_B
3
-16.273
0.200
0.648
-0.135
7.814
1
19
B
6
B
13
7.044
B_DC6:DG13_B
4
-11.628
0.530
0.642
-0.177
5.939
1
19
B
7
B
12
1.160
B_DC7:DG12_B
5
-3.431
0.128
0.137
-0.067
21.363
B
8
B
10
-93.026
B_DG8:DA10_B
6
-26.794
1.931
-0.067
-5.437
3.309
31.541
B
B
3
4
4.370
B
B
16
15
3.210
2.364
-1.038
-0.164
BB_DG3DC4:DG15DC16_BB
1
-4.837
8.941
31.089
-0.743
1.007
2.991
35.950
B
B
4
5
1.277
B
B
15
14
2.968
0.788
0.476
0.851
BB_DC4DA5:DT14DG15_BB
2
0.453
-0.733
35.939
1.276
-0.712
3.397
33.206
B
B
5
6
-3.513
B
B
14
13
3.381
-2.006
0.779
-0.366
BB_DA5DC6:DG13DT14_BB
3
-0.008
0.013
33.147
-0.292
-1.364
3.609
38.277
B
B
6
7
-10.138
B
B
13
12
3.455
-6.616
-0.184
-1.198
BB_DC6DC7:DG12DG13_BB
4
-0.906
1.389
37.712
-0.923
0.156
3.179
95.346
B
B
7
8
-3.225
B
B
12
10
3.162
-4.766
-0.736
-0.020
BB_DC7DG8:DA10DG12_BB
5
-3.288
2.224
95.212
0.067
0.442
pdbx_unobs_or_zero_occ_atoms
software
repository
Initial release
Version format compliance
Version format compliance
Advisory
Refinement description
1
0
2003-11-25
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
_software.name
RCSB
Y
RCSB
2003-02-25
REL
REL
SO4
SULFATE ION
HOH
water
SO4
301
3
SO4
SO4
301
A
SO4
302
3
SO4
SO4
302
A
SO4
303
3
SO4
SO4
303
A
HOH
2
4
HOH
HOH
26
B
HOH
7
4
HOH
HOH
27
B
HOH
12
4
HOH
HOH
28
B
HOH
13
4
HOH
HOH
29
B
HOH
25
4
HOH
HOH
30
B
HOH
27
4
HOH
HOH
31
B
HOH
29
4
HOH
HOH
32
B
HOH
30
4
HOH
HOH
33
B
HOH
32
4
HOH
HOH
34
B
HOH
33
4
HOH
HOH
35
B
HOH
35
4
HOH
HOH
36
B
HOH
36
4
HOH
HOH
37
B
HOH
39
4
HOH
HOH
38
B
HOH
41
4
HOH
HOH
39
B
HOH
42
4
HOH
HOH
40
B
HOH
49
4
HOH
HOH
41
B
HOH
51
4
HOH
HOH
42
B
HOH
53
4
HOH
HOH
43
B
HOH
65
4
HOH
HOH
44
B
HOH
76
4
HOH
HOH
45
B
HOH
79
4
HOH
HOH
46
B
HOH
81
4
HOH
HOH
47
B
HOH
93
4
HOH
HOH
48
B
HOH
100
4
HOH
HOH
49
B
HOH
103
4
HOH
HOH
50
B
HOH
112
4
HOH
HOH
51
B
HOH
114
4
HOH
HOH
52
B
HOH
120
4
HOH
HOH
53
B
HOH
133
4
HOH
HOH
54
B
HOH
134
4
HOH
HOH
55
B
HOH
135
4
HOH
HOH
56
B
HOH
143
4
HOH
HOH
57
B
HOH
144
4
HOH
HOH
58
B
HOH
150
4
HOH
HOH
59
B
HOH
153
4
HOH
HOH
60
B
HOH
154
4
HOH
HOH
61
B
HOH
155
4
HOH
HOH
62
B
HOH
156
4
HOH
HOH
63
B
HOH
159
4
HOH
HOH
64
B
HOH
162
4
HOH
HOH
65
B
HOH
163
4
HOH
HOH
66
B
HOH
168
4
HOH
HOH
67
B
HOH
172
4
HOH
HOH
68
B
HOH
177
4
HOH
HOH
69
B
HOH
178
4
HOH
HOH
70
B
HOH
180
4
HOH
HOH
71
B
HOH
181
4
HOH
HOH
72
B
HOH
182
4
HOH
HOH
73
B
HOH
186
4
HOH
HOH
74
B
HOH
191
4
HOH
HOH
75
B
HOH
193
4
HOH
HOH
76
B
HOH
195
4
HOH
HOH
77
B
HOH
196
4
HOH
HOH
78
B
HOH
204
4
HOH
HOH
79
B
HOH
206
4
HOH
HOH
80
B
HOH
218
4
HOH
HOH
81
B
HOH
225
4
HOH
HOH
82
B
HOH
228
4
HOH
HOH
83
B
HOH
229
4
HOH
HOH
84
B
HOH
244
4
HOH
HOH
85
B
HOH
251
4
HOH
HOH
86
B
HOH
254
4
HOH
HOH
87
B
HOH
268
4
HOH
HOH
88
B
HOH
271
4
HOH
HOH
89
B
HOH
273
4
HOH
HOH
90
B
HOH
275
4
HOH
HOH
91
B
HOH
1
4
HOH
HOH
304
A
HOH
4
4
HOH
HOH
305
A
HOH
5
4
HOH
HOH
306
A
HOH
6
4
HOH
HOH
307
A
HOH
8
4
HOH
HOH
308
A
HOH
9
4
HOH
HOH
309
A
HOH
10
4
HOH
HOH
310
A
HOH
11
4
HOH
HOH
311
A
HOH
14
4
HOH
HOH
312
A
HOH
15
4
HOH
HOH
313
A
HOH
16
4
HOH
HOH
314
A
HOH
17
4
HOH
HOH
315
A
HOH
19
4
HOH
HOH
316
A
HOH
20
4
HOH
HOH
317
A
HOH
21
4
HOH
HOH
318
A
HOH
22
4
HOH
HOH
319
A
HOH
23
4
HOH
HOH
320
A
HOH
24
4
HOH
HOH
321
A
HOH
26
4
HOH
HOH
322
A
HOH
28
4
HOH
HOH
323
A
HOH
31
4
HOH
HOH
324
A
HOH
34
4
HOH
HOH
325
A
HOH
37
4
HOH
HOH
326
A
HOH
38
4
HOH
HOH
327
A
HOH
40
4
HOH
HOH
328
A
HOH
44
4
HOH
HOH
329
A
HOH
45
4
HOH
HOH
330
A
HOH
46
4
HOH
HOH
331
A
HOH
48
4
HOH
HOH
332
A
HOH
50
4
HOH
HOH
333
A
HOH
52
4
HOH
HOH
334
A
HOH
54
4
HOH
HOH
335
A
HOH
55
4
HOH
HOH
336
A
HOH
56
4
HOH
HOH
337
A
HOH
57
4
HOH
HOH
338
A
HOH
58
4
HOH
HOH
339
A
HOH
59
4
HOH
HOH
340
A
HOH
60
4
HOH
HOH
341
A
HOH
61
4
HOH
HOH
342
A
HOH
62
4
HOH
HOH
343
A
HOH
63
4
HOH
HOH
344
A
HOH
66
4
HOH
HOH
345
A
HOH
67
4
HOH
HOH
346
A
HOH
68
4
HOH
HOH
347
A
HOH
69
4
HOH
HOH
348
A
HOH
70
4
HOH
HOH
349
A
HOH
71
4
HOH
HOH
350
A
HOH
72
4
HOH
HOH
351
A
HOH
73
4
HOH
HOH
352
A
HOH
74
4
HOH
HOH
353
A
HOH
75
4
HOH
HOH
354
A
HOH
77
4
HOH
HOH
355
A
HOH
78
4
HOH
HOH
356
A
HOH
80
4
HOH
HOH
357
A
HOH
82
4
HOH
HOH
358
A
HOH
83
4
HOH
HOH
359
A
HOH
84
4
HOH
HOH
360
A
HOH
85
4
HOH
HOH
361
A
HOH
86
4
HOH
HOH
362
A
HOH
87
4
HOH
HOH
363
A
HOH
88
4
HOH
HOH
364
A
HOH
89
4
HOH
HOH
365
A
HOH
90
4
HOH
HOH
366
A
HOH
91
4
HOH
HOH
367
A
HOH
92
4
HOH
HOH
368
A
HOH
94
4
HOH
HOH
369
A
HOH
95
4
HOH
HOH
370
A
HOH
96
4
HOH
HOH
371
A
HOH
97
4
HOH
HOH
372
A
HOH
98
4
HOH
HOH
373
A
HOH
99
4
HOH
HOH
374
A
HOH
101
4
HOH
HOH
375
A
HOH
102
4
HOH
HOH
376
A
HOH
104
4
HOH
HOH
377
A
HOH
105
4
HOH
HOH
378
A
HOH
106
4
HOH
HOH
379
A
HOH
107
4
HOH
HOH
380
A
HOH
108
4
HOH
HOH
381
A
HOH
109
4
HOH
HOH
382
A
HOH
110
4
HOH
HOH
383
A
HOH
111
4
HOH
HOH
384
A
HOH
113
4
HOH
HOH
385
A
HOH
115
4
HOH
HOH
386
A
HOH
116
4
HOH
HOH
387
A
HOH
117
4
HOH
HOH
388
A
HOH
118
4
HOH
HOH
389
A
HOH
119
4
HOH
HOH
390
A
HOH
121
4
HOH
HOH
391
A
HOH
122
4
HOH
HOH
392
A
HOH
123
4
HOH
HOH
393
A
HOH
124
4
HOH
HOH
394
A
HOH
125
4
HOH
HOH
395
A
HOH
126
4
HOH
HOH
396
A
HOH
127
4
HOH
HOH
397
A
HOH
128
4
HOH
HOH
398
A
HOH
129
4
HOH
HOH
399
A
HOH
130
4
HOH
HOH
400
A
HOH
131
4
HOH
HOH
401
A
HOH
137
4
HOH
HOH
402
A
HOH
138
4
HOH
HOH
403
A
HOH
145
4
HOH
HOH
404
A
HOH
146
4
HOH
HOH
405
A
HOH
148
4
HOH
HOH
406
A
HOH
149
4
HOH
HOH
407
A
HOH
151
4
HOH
HOH
408
A
HOH
157
4
HOH
HOH
409
A
HOH
158
4
HOH
HOH
410
A
HOH
160
4
HOH
HOH
411
A
HOH
161
4
HOH
HOH
412
A
HOH
164
4
HOH
HOH
413
A
HOH
165
4
HOH
HOH
414
A
HOH
166
4
HOH
HOH
415
A
HOH
167
4
HOH
HOH
416
A
HOH
169
4
HOH
HOH
417
A
HOH
170
4
HOH
HOH
418
A
HOH
171
4
HOH
HOH
419
A
HOH
173
4
HOH
HOH
420
A
HOH
174
4
HOH
HOH
421
A
HOH
175
4
HOH
HOH
422
A
HOH
176
4
HOH
HOH
423
A
HOH
179
4
HOH
HOH
424
A
HOH
183
4
HOH
HOH
425
A
HOH
184
4
HOH
HOH
426
A
HOH
187
4
HOH
HOH
427
A
HOH
188
4
HOH
HOH
428
A
HOH
189
4
HOH
HOH
429
A
HOH
190
4
HOH
HOH
430
A
HOH
194
4
HOH
HOH
431
A
HOH
197
4
HOH
HOH
432
A
HOH
198
4
HOH
HOH
433
A
HOH
199
4
HOH
HOH
434
A
HOH
200
4
HOH
HOH
435
A
HOH
201
4
HOH
HOH
436
A
HOH
202
4
HOH
HOH
437
A
HOH
203
4
HOH
HOH
438
A
HOH
205
4
HOH
HOH
439
A
HOH
207
4
HOH
HOH
440
A
HOH
208
4
HOH
HOH
441
A
HOH
209
4
HOH
HOH
442
A
HOH
211
4
HOH
HOH
443
A
HOH
212
4
HOH
HOH
444
A
HOH
213
4
HOH
HOH
445
A
HOH
214
4
HOH
HOH
446
A
HOH
215
4
HOH
HOH
447
A
HOH
216
4
HOH
HOH
448
A
HOH
217
4
HOH
HOH
449
A
HOH
219
4
HOH
HOH
450
A
HOH
220
4
HOH
HOH
451
A
HOH
221
4
HOH
HOH
452
A
HOH
222
4
HOH
HOH
453
A
HOH
223
4
HOH
HOH
454
A
HOH
224
4
HOH
HOH
455
A
HOH
226
4
HOH
HOH
456
A
HOH
227
4
HOH
HOH
457
A
HOH
230
4
HOH
HOH
458
A
HOH
231
4
HOH
HOH
459
A
HOH
232
4
HOH
HOH
460
A
HOH
233
4
HOH
HOH
461
A
HOH
234
4
HOH
HOH
462
A
HOH
235
4
HOH
HOH
463
A
HOH
236
4
HOH
HOH
464
A
HOH
237
4
HOH
HOH
465
A
HOH
238
4
HOH
HOH
466
A
HOH
239
4
HOH
HOH
467
A
HOH
240
4
HOH
HOH
468
A
HOH
242
4
HOH
HOH
469
A
HOH
243
4
HOH
HOH
470
A
HOH
245
4
HOH
HOH
471
A
HOH
246
4
HOH
HOH
472
A
HOH
247
4
HOH
HOH
473
A
HOH
250
4
HOH
HOH
474
A
HOH
252
4
HOH
HOH
475
A
HOH
253
4
HOH
HOH
476
A
HOH
255
4
HOH
HOH
477
A
HOH
256
4
HOH
HOH
478
A
HOH
258
4
HOH
HOH
479
A
HOH
259
4
HOH
HOH
480
A
HOH
260
4
HOH
HOH
481
A
HOH
261
4
HOH
HOH
482
A
HOH
262
4
HOH
HOH
483
A
HOH
263
4
HOH
HOH
484
A
HOH
264
4
HOH
HOH
485
A
HOH
265
4
HOH
HOH
486
A
HOH
266
4
HOH
HOH
487
A
HOH
267
4
HOH
HOH
488
A
HOH
270
4
HOH
HOH
489
A
HOH
272
4
HOH
HOH
490
A
HOH
274
4
HOH
HOH
491
A
HOH
276
4
HOH
HOH
492
A
HOH
277
4
HOH
HOH
493
A
G
1
n
1
DG
1
B
C
2
n
2
DC
2
B
G
3
n
3
DG
3
B
C
4
n
4
DC
4
B
A
5
n
5
DA
5
B
C
6
n
6
DC
6
B
C
7
n
7
DC
7
B
G
8
n
8
DG
8
B
A
9
n
9
DA
9
B
A
10
n
10
DA
10
B
A
11
n
11
DA
11
B
G
12
n
12
DG
12
B
G
13
n
13
DG
13
B
T
14
n
14
DT
14
B
G
15
n
15
DG
15
B
C
16
n
16
DC
16
B
G
17
n
17
DG
17
B
T
18
n
18
DT
18
B
A
19
n
19
DA
19
B
T
20
n
20
DT
20
B
T
21
n
21
DT
21
B
G
22
n
22
DG
22
B
T
23
n
23
DT
23
B
C
24
n
24
DC
24
B
T
25
n
25
DT
25
B
MSE
1
n
1
MSE
1
A
LEU
2
n
2
LEU
2
A
SER
3
n
3
SER
3
A
HIS
4
n
4
HIS
4
A
MSE
5
n
5
MSE
5
A
VAL
6
n
6
VAL
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
ARG
9
n
9
ARG
9
A
GLN
10
n
10
GLN
10
A
ASP
11
n
11
ASP
11
A
ILE
12
n
12
ILE
12
A
GLY
13
n
13
GLY
13
A
ARG
14
n
14
ARG
14
A
ALA
15
n
15
ALA
15
A
ALA
16
n
16
ALA
16
A
SER
17
n
17
SER
17
A
TYR
18
n
18
TYR
18
A
TYR
19
n
19
TYR
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
GLY
31
n
31
GLY
31
A
ASP
32
n
32
ASP
32
A
ALA
33
n
33
ALA
33
A
SER
34
n
34
SER
34
A
GLU
35
n
35
GLU
35
A
TRP
36
n
36
TRP
36
A
GLN
37
n
37
GLN
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
GLY
40
n
40
GLY
40
A
ALA
41
n
41
ALA
41
A
GLU
42
n
42
GLU
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
SER
47
n
47
SER
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
ASP
51
n
51
ASP
51
A
SER
52
n
52
SER
52
A
LYS
53
n
53
LYS
53
A
ARG
54
n
54
ARG
54
A
PHE
55
n
55
PHE
55
A
ARG
56
n
56
ARG
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
LEU
59
n
59
LEU
59
A
ALA
60
n
60
ALA
60
A
GLY
61
n
61
GLY
61
A
ASN
62
n
62
ASN
62
A
ILE
63
n
63
ILE
63
A
GLY
64
n
64
GLY
64
A
GLU
65
n
65
GLU
65
A
GLY
66
n
66
GLY
66
A
HIS
67
n
67
HIS
67
A
ARG
68
n
68
ARG
68
A
ILE
69
n
69
ILE
69
A
MSE
70
n
70
MSE
70
A
ARG
71
n
71
ARG
71
A
SER
72
n
72
SER
72
A
ALA
73
n
73
ALA
73
A
THR
74
n
74
THR
74
A
ARG
75
n
75
ARG
75
A
GLN
76
n
76
GLN
76
A
ASP
77
n
77
ASP
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
GLU
80
n
80
GLU
80
A
ARG
81
n
81
ARG
81
A
ILE
82
n
82
ILE
82
A
GLY
83
n
83
GLY
83
A
LEU
84
n
84
LEU
84
A
ASP
85
n
85
ASP
85
A
LEU
86
n
86
LEU
86
A
THR
87
n
87
THR
87
A
PHE
88
n
88
PHE
88
A
SER
89
n
89
SER
89
A
ALA
90
n
90
ALA
90
A
PRO
91
n
91
PRO
91
A
LYS
92
n
92
LYS
92
A
SER
93
n
93
SER
93
A
VAL
94
n
94
VAL
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
GLN
97
n
97
GLN
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
ASP
103
n
103
ASP
103
A
ALA
104
n
104
ALA
104
A
GLU
105
n
105
GLU
105
A
ILE
106
n
106
ILE
106
A
ILE
107
n
107
ILE
107
A
LYS
108
n
108
LYS
108
A
ALA
109
n
109
ALA
109
A
HIS
110
n
110
HIS
110
A
ASP
111
n
111
ASP
111
A
ARG
112
n
112
ARG
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
ALA
115
n
115
ALA
115
A
ARG
116
n
116
ARG
116
A
THR
117
n
117
THR
117
A
LEU
118
n
118
LEU
118
A
GLU
119
n
119
GLU
119
A
GLN
120
n
120
GLN
120
A
ALA
121
n
121
ALA
121
A
GLU
122
n
122
GLU
122
A
ALA
123
n
123
ALA
123
A
ARG
124
n
124
ARG
124
A
ALA
125
n
125
ALA
125
A
GLN
126
n
126
GLN
126
A
ALA
127
n
127
ALA
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
LYS
130
n
130
LYS
130
A
ILE
131
n
131
ILE
131
A
GLN
132
n
132
GLN
132
A
GLY
133
n
133
GLY
133
A
LYS
134
n
134
LYS
134
A
THR
135
n
135
THR
135
A
ARG
136
n
136
ARG
136
A
ILE
137
n
137
ILE
137
A
GLU
138
n
138
GLU
138
A
THR
139
n
139
THR
139
A
THR
140
n
140
THR
140
A
GLY
141
n
141
GLY
141
A
ASN
142
n
142
ASN
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
ILE
145
n
145
ILE
145
A
GLY
146
n
146
GLY
146
A
LYS
147
n
147
LYS
147
A
PHE
148
n
148
PHE
148
A
ARG
149
n
149
ARG
149
A
HIS
150
n
150
HIS
150
A
GLU
151
n
151
GLU
151
A
THR
152
n
152
THR
152
A
SER
153
n
153
SER
153
A
ARG
154
n
154
ARG
154
A
GLU
155
n
155
GLU
155
A
ARG
156
n
156
ARG
156
A
ASP
157
n
157
ASP
157
A
PRO
158
n
158
PRO
158
A
GLN
159
n
159
GLN
159
A
LEU
160
n
160
LEU
160
A
HIS
161
n
161
HIS
161
A
THR
162
n
162
THR
162
A
HIS
163
n
163
HIS
163
A
ALA
164
n
164
ALA
164
A
VAL
165
n
165
VAL
165
A
ILE
166
n
166
ILE
166
A
LEU
167
n
167
LEU
167
A
ASN
168
n
168
ASN
168
A
MSE
169
n
169
MSE
169
A
THR
170
n
170
THR
170
A
LYS
171
n
171
LYS
171
A
ARG
172
n
172
ARG
172
A
SER
173
n
173
SER
173
A
ASP
174
n
174
ASP
174
A
GLY
175
n
175
GLY
175
A
GLN
176
n
176
GLN
176
A
TRP
177
n
177
TRP
177
A
ARG
178
n
178
ARG
178
A
ALA
179
n
179
ALA
179
A
LEU
180
n
180
LEU
180
A
LYS
181
n
181
LYS
181
A
ASN
182
n
182
ASN
182
A
ASP
183
n
183
ASP
183
A
GLU
184
n
184
GLU
184
A
ILE
185
n
185
ILE
185
A
VAL
186
n
186
VAL
186
A
LYS
187
n
187
LYS
187
A
ARG
188
n
188
ALA
188
A
THR
189
n
189
THR
189
A
ARG
190
n
190
ARG
190
A
TYR
191
n
191
TYR
191
A
LEU
192
n
192
LEU
192
A
GLY
193
n
193
GLY
193
A
ALA
194
n
194
ALA
194
A
VAL
195
n
195
VAL
195
A
TYR
196
n
196
TYR
196
A
ASN
197
n
197
ASN
197
A
ALA
198
n
198
ALA
198
A
GLU
199
n
199
GLU
199
A
LEU
200
n
200
LEU
200
A
ALA
201
n
201
ALA
201
A
HIS
202
n
202
HIS
202
A
GLU
203
n
203
GLU
203
A
LEU
204
n
204
LEU
204
A
GLN
205
n
205
GLN
205
A
LYS
206
n
206
LYS
206
A
LEU
207
n
207
LEU
207
A
GLY
208
n
208
GLY
208
A
TYR
209
n
209
TYR
209
A
GLN
210
n
210
GLN
210
A
LEU
211
n
211
LEU
211
A
ARG
212
n
212
ARG
212
A
TYR
213
n
213
TYR
213
A
GLY
214
n
214
GLY
214
A
LYS
215
n
215
LYS
215
A
ASP
216
n
216
ASP
216
A
GLY
217
n
217
GLY
217
A
ASN
218
n
218
ASN
218
A
PHE
219
n
219
PHE
219
A
ASP
220
n
220
ASP
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
HIS
223
n
223
HIS
223
A
ILE
224
n
224
ILE
224
A
ASP
225
n
225
ASP
225
A
ARG
226
n
226
ARG
226
A
GLN
227
n
227
GLN
227
A
GLN
228
n
228
GLN
228
A
ILE
229
n
229
ILE
229
A
GLU
230
n
230
GLU
230
A
GLY
231
n
231
GLY
231
A
PHE
232
n
232
PHE
232
A
SER
233
n
233
SER
233
A
LYS
234
n
234
LYS
234
A
ARG
235
n
235
ARG
235
A
THR
236
n
236
THR
236
A
GLU
237
n
237
GLU
237
A
GLN
238
n
238
GLN
238
A
ILE
239
n
239
ILE
239
A
ALA
240
n
240
ALA
240
A
GLU
241
n
241
GLU
241
A
TRP
242
n
242
TRP
242
A
TYR
243
n
243
TYR
243
A
ALA
244
n
244
ALA
244
A
ALA
245
n
245
ALA
245
A
ARG
246
n
246
ARG
246
A
GLY
247
n
247
GLY
247
A
LEU
248
n
248
LEU
248
A
ASP
249
n
249
ASP
249
A
PRO
250
n
250
PRO
250
A
ASN
251
n
251
ASN
251
A
SER
252
n
252
SER
252
A
VAL
253
n
253
VAL
253
A
SER
254
n
254
SER
254
A
LEU
255
n
255
LEU
255
A
GLU
256
n
256
GLU
256
A
GLN
257
n
257
GLN
257
A
LYS
258
n
258
LYS
258
A
GLN
259
n
259
GLN
259
A
ALA
260
n
260
ALA
260
A
ALA
261
n
261
ALA
261
A
LYS
262
n
262
LYS
262
A
VAL
263
n
263
VAL
263
A
LEU
264
n
264
LEU
264
A
SER
265
n
265
SER
265
A
ARG
266
n
266
ARG
266
A
ALA
267
n
267
ALA
267
A
LYS
268
n
268
LYS
268
A
LYS
269
n
269
LYS
269
A
THR
270
n
270
THR
270
A
SER
271
n
271
SER
271
A
VAL
272
n
272
VAL
272
A
ASP
273
n
273
ASP
273
A
ARG
274
n
274
ARG
274
A
GLU
275
n
275
GLU
275
A
ALA
276
n
276
ALA
276
A
LEU
277
n
277
LEU
277
A
ARG
278
n
278
ARG
278
A
ALA
279
n
279
ALA
279
A
GLU
280
n
280
GLU
280
A
TRP
281
n
281
TRP
281
A
GLN
282
n
282
GLN
282
A
ALA
283
n
283
ALA
283
A
THR
284
n
284
THR
284
A
ALA
285
n
285
ALA
285
A
LYS
286
n
286
LYS
286
A
GLU
287
n
287
GLU
287
A
LEU
288
n
288
LEU
288
A
GLY
289
n
289
GLY
289
A
ILE
290
n
290
ILE
290
A
ASP
291
n
291
ASP
291
A
PHE
292
n
292
PHE
292
A
SER
293
n
293
SER
293
A
author_defined_assembly
2
dimeric
A
MSE
1
SELENOMETHIONINE
B
MSE
1
MET
A
MSE
5
SELENOMETHIONINE
B
MSE
5
MET
A
MSE
70
SELENOMETHIONINE
B
MSE
70
MET
A
MSE
169
SELENOMETHIONINE
B
MSE
169
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MSE
5
B
N
MSE
5
A
O
ASP
85
B
O
ASP
85
A
N
LEU
84
B
N
LEU
84
A
O
ILE
166
B
O
ILE
166
A
O
HIS
161
B
O
HIS
161
A
N
HIS
150
B
N
HIS
150
A
O
LYS
147
B
O
LYS
147
A
N
GLU
35
B
N
GLU
35
A
N
ALA
127
B
N
ALA
127
A
O
GLU
138
B
O
GLU
138
A
N
THR
170
B
N
THR
170
A
O
ARG
178
B
O
ARG
178
A
N
ARG
212
B
N
ARG
212
A
O
ASP
220
B
O
ASP
220
1
A
GLU
20
B
GLU
20
1
Y
1
A
ASP
21
B
ASP
21
1
Y
1
A
GLY
22
B
GLY
22
1
Y
1
A
ALA
23
B
ALA
23
1
Y
1
A
ASP
24
B
ASP
24
1
Y
1
A
ASP
25
B
ASP
25
1
Y
1
A
TYR
26
B
TYR
26
1
Y
1
A
TYR
27
B
TYR
27
1
Y
1
A
ALA
28
B
ALA
28
1
Y
1
A
LYS
29
B
LYS
29
1
Y
1
A
ASP
30
B
ASP
30
1
Y
1
B
DC
2
0.062
SIDE CHAIN
1
B
DG
13
0.056
SIDE CHAIN
1
B
DG
15
0.073
SIDE CHAIN
1
B
DG
22
0.049
SIDE CHAIN
1
B
DT
23
0.072
SIDE CHAIN
1
2.43
0.30
108.30
110.73
B
B
B
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
-22.44
2.50
109.40
86.96
B
B
B
C2'
C3'
O3'
DC
DC
DC
2
2
2
N
1
8.59
1.40
114.30
122.89
B
B
B
N9
C1'
C2'
DG
DG
DG
3
3
3
N
1
8.96
1.40
114.30
123.26
B
B
B
N1
C1'
C2'
DC
DC
DC
6
6
6
N
1
3.58
0.30
108.30
111.88
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.26
0.30
108.30
110.56
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
9.45
1.40
114.30
123.75
B
B
B
N1
C1'
C2'
DC
DC
DC
16
16
16
N
1
3.83
0.30
108.30
112.13
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
3.44
0.50
106.80
110.24
B
B
B
O4'
C1'
C2'
DT
DT
DT
18
18
18
N
1
9.86
1.40
114.30
124.16
B
B
B
N1
C1'
C2'
DT
DT
DT
18
18
18
N
1
4.42
0.30
108.30
112.72
B
B
B
O4'
C1'
N1
DT
DT
DT
18
18
18
N
1
-15.30
2.50
109.40
94.10
B
B
B
C2'
C3'
O3'
DA
DA
DA
19
19
19
N
1
-19.44
2.50
109.40
89.96
B
B
B
C2'
C3'
O3'
DT
DT
DT
20
20
20
N
1
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DT
DT
DT
20
20
20
N
1
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
1
-18.67
2.50
109.40
90.73
B
B
B
C2'
C3'
O3'
DT
DT
DT
23
23
23
N
1
A
A
O
O
HOH
HOH
455
455
1.24
1_555
7_555
1
A
ASP
32
68.45
87.84
1
A
GLU
65
-66.53
29.98
1
A
GLN
159
-158.49
88.80
1
A
LYS
215
61.54
67.18
1
A
ASP
216
-167.47
-14.84
1
A
THR
270
-114.02
-154.22
1
A
VAL
272
176.22
151.95
0.2797
0.2465
0.2487
0.2487
1.95
50.0
1851
37090
37051
random
1
1.0
MAD
Engh & Huber
1.95
50.0
256
3009
15
512
2226
1.69249
0.005652
29.69
2.05
50.00
1OMH
64999
1.0
1.0
0.146
1
100.0
1.95
50.0
100.0
data reduction
MOSFLM
data scaling
SCALA
phasing
MLPHARE
refinement
CNS
data scaling
CCP4
(SCALA)
phasing
SnB
TrwC protein/DNA Complex
Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
ASP
11
B
ASP
11
HELX_P
A
TYR
18
B
TYR
18
1
1
8
A
GLY
38
B
GLY
38
HELX_P
A
LEU
44
B
LEU
44
1
2
7
A
ASP
51
B
ASP
51
HELX_P
A
GLY
61
B
GLY
61
1
3
11
A
PRO
91
B
PRO
91
HELX_P
A
VAL
100
B
VAL
100
1
4
10
A
ASP
103
B
ASP
103
HELX_P
A
ALA
123
B
ALA
123
1
5
21
A
ASN
182
B
ASN
182
HELX_P
A
ALA
188
B
ALA
188
1
6
7
A
ALA
188
B
ALA
188
HELX_P
A
LEU
207
B
LEU
207
1
7
20
A
ASP
225
B
ASP
225
HELX_P
A
GLY
231
B
GLY
231
1
8
7
A
SER
233
B
SER
233
HELX_P
A
GLY
247
B
GLY
247
1
9
15
A
SER
254
B
SER
254
HELX_P
A
SER
265
B
SER
265
1
10
12
A
ASP
273
B
ASP
273
HELX_P
A
LEU
288
B
LEU
288
1
11
16
covale
1.329
A
MSE
1
B
C
MSE
1
1_555
A
LEU
2
B
N
LEU
2
1_555
covale
1.321
A
HIS
4
B
C
HIS
4
1_555
A
MSE
5
B
N
MSE
5
1_555
covale
1.325
A
MSE
5
B
C
MSE
5
1_555
A
VAL
6
B
N
VAL
6
1_555
covale
1.329
A
ILE
69
B
C
ILE
69
1_555
A
MSE
70
B
N
MSE
70
1_555
covale
1.330
A
MSE
70
B
C
MSE
70
1_555
A
ARG
71
B
N
ARG
71
1_555
covale
1.327
A
ASN
168
B
C
ASN
168
1_555
A
MSE
169
B
N
MSE
169
1_555
covale
1.327
A
MSE
169
B
C
MSE
169
1_555
A
THR
170
B
N
THR
170
1_555
hydrog
WATSON-CRICK
B
DG
3
A
N1
DG
3
1_555
B
DC
16
A
N3
DC
16
1_555
hydrog
WATSON-CRICK
B
DG
3
A
N2
DG
3
1_555
B
DC
16
A
O2
DC
16
1_555
hydrog
WATSON-CRICK
B
DG
3
A
O6
DG
3
1_555
B
DC
16
A
N4
DC
16
1_555
hydrog
WATSON-CRICK
B
DC
4
A
N3
DC
4
1_555
B
DG
15
A
N1
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
4
A
N4
DC
4
1_555
B
DG
15
A
O6
DG
15
1_555
hydrog
WATSON-CRICK
B
DC
4
A
O2
DC
4
1_555
B
DG
15
A
N2
DG
15
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N1
DA
5
1_555
B
DT
14
A
N3
DT
14
1_555
hydrog
WATSON-CRICK
B
DA
5
A
N6
DA
5
1_555
B
DT
14
A
O4
DT
14
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
6
1_555
B
DG
13
A
N1
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
6
1_555
B
DG
13
A
O6
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
6
1_555
B
DG
13
A
N2
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
7
A
N3
DC
7
1_555
B
DG
12
A
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
7
A
N4
DC
7
1_555
B
DG
12
A
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
7
A
O2
DC
7
1_555
B
DG
12
A
N2
DG
12
1_555
hydrog
DG-DA MISPAIR
B
DG
8
A
N2
DG
8
1_555
B
DA
10
A
N1
DA
10
1_555
TRANSFERASE/DNA
PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE, DNA REPLICATION, TRANSFERASE-DNA COMPLEX
Q47673_ECOLI
UNP
2
1
Q47673
MLSHMVLTRQDIGRAASYYEDGADDYYAKDGDASEWQGKGAEELGLSGEVDSKRFRELLAGNIGEGHRIMRSATRQDSKE
RIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRERDPQL
HTHAVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQKLGYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIA
EWYAARGLDPNSVSLEQKQAAKVLSRAKKTSVDREALRAEWQATAKELGIDFS
1OMH
PDB
1
1OMH
1
293
1OMH
1
293
Q47673
A
1
1
293
1
25
1OMH
1
25
1OMH
B
2
1
25
1
MET
MODIFIED RESIDUE
MSE
1
1OMH
A
Q47673
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
5
1OMH
A
Q47673
UNP
5
5
1
MET
MODIFIED RESIDUE
MSE
70
1OMH
A
Q47673
UNP
70
70
1
MET
MODIFIED RESIDUE
MSE
169
1OMH
A
Q47673
UNP
169
169
5
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
2
B
LEU
2
A
THR
8
B
THR
8
A
ARG
81
B
ARG
81
A
SER
89
B
SER
89
A
PRO
158
B
PRO
158
A
LEU
167
B
LEU
167
A
ILE
145
B
ILE
145
A
THR
152
B
THR
152
A
SER
34
B
SER
34
A
GLN
37
B
GLN
37
A
GLN
126
B
GLN
126
A
ILE
131
B
ILE
131
A
LYS
134
B
LYS
134
A
THR
139
B
THR
139
A
THR
170
B
THR
170
A
LYS
171
B
LYS
171
A
TRP
177
B
TRP
177
A
ARG
178
B
ARG
178
A
LEU
211
B
LEU
211
A
TYR
213
B
TYR
213
A
PHE
219
B
PHE
219
A
LEU
221
B
LEU
221
BINDING SITE FOR RESIDUE SO4 A 301
Software
6
BINDING SITE FOR RESIDUE SO4 A 302
Software
4
BINDING SITE FOR RESIDUE SO4 A 303
Software
3
A
ARG
154
B
ARG
154
6
1_555
A
HIS
161
B
HIS
161
6
1_555
A
HIS
163
B
HIS
163
6
1_555
A
LYS
269
B
LYS
269
6
1_555
A
HOH
410
G
HOH
6
1_555
B
DT
25
A
DT
25
6
1_555
A
HIS
150
B
HIS
150
4
1_555
A
GLU
151
B
GLU
151
4
1_555
A
THR
152
B
THR
152
4
1_555
A
HOH
410
G
HOH
4
1_555
A
ARG
14
B
ARG
14
3
1_555
A
ARG
154
B
ARG
154
3
1_555
A
ARG
266
B
ARG
266
3
1_555
178
P 61 2 2