1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lindberg, M.
Biverstahl, H.
Graslund, A.
Maler, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
270
3055
3063
10.1046/j.1432-1033.2003.03685.x
12846839
Structure and positioning comparison of two variants of penetratin in two different membrane mimicking systems by NMR
2003
10.2210/pdb1omq/pdb
pdb_00001omq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2253.781
Homeotic antennapedia protein
C-terminal fragment
1
syn
polymer
penetratin
no
no
RQIKIWFQNRRMKWKK
RQIKIWFQNRRMKWKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-07-29
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2003-02-26
REL
REL
THE Peptide WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE Peptide IS NATURALLY FOUND IN DROSOPHILA MELANOGASTER (fruit fly). The peptide was obtained from Neosystem Inc. and used without further purification.
sample
Structure was determined by standard 2D homonuclear techniques
structures with the lowest energy
60
20
2D NOESY
2D TOCSY
50mM KCl
5.5
1
atm
310
K
A total of 129 distance constraints where identified, mostly sequential and medium range NOEs (40 intra-residue, 54 sequential and 35 medium range NOEs)
distance geometry
1
closest to the average,lowest energy
3mM penetratin, 50 mM KCl; 15% w/v (DMPC+DMPG)/DHPC bicellar solution with q=0.5 and 5% D2O
15% w/v (DMPC+DMPG)/DHPC bicellar solution with q=0.5 and 5% D2O
collection
VNMR
6.1c
data analysis
Felix
2000.1
Guntert, Mumenthaler, Herrmann
structure solution
DYANA
1.5
Guntert, Mumenthaler, Herrmann
refinement
DYANA
1.5
600
Varian
UNITY
ARG
43
n
1
ARG
43
A
GLN
44
n
2
GLN
44
A
ILE
45
n
3
ILE
45
A
LYS
46
n
4
LYS
46
A
ILE
47
n
5
ILE
47
A
TRP
48
n
6
TRP
48
A
PHE
49
n
7
PHE
49
A
GLN
50
n
8
GLN
50
A
ASN
51
n
9
ASN
51
A
ARG
52
n
10
ARG
52
A
ARG
53
n
11
ARG
53
A
MET
54
n
12
MET
54
A
LYS
55
n
13
LYS
55
A
TRP
56
n
14
TRP
56
A
LYS
57
n
15
LYS
57
A
LYS
58
n
16
LYS
58
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
HD21
ILE
ASN
47
51
1.59
1
A
LYS
57
-40.69
107.81
2
A
GLN
44
-149.94
24.42
3
A
TRP
56
-104.31
71.74
4
A
ARG
53
-115.00
68.36
4
A
MET
54
161.05
-26.36
4
A
TRP
56
-114.59
66.43
5
A
GLN
44
39.26
37.27
5
A
MET
54
38.71
58.23
8
A
ARG
53
-92.11
57.63
8
A
MET
54
161.00
-26.27
9
A
GLN
44
-96.74
34.01
10
A
LYS
57
-46.37
109.95
11
A
GLN
44
174.59
-34.05
11
A
LYS
55
-119.54
56.12
11
A
TRP
56
-162.43
-47.13
12
A
GLN
44
-148.22
19.28
12
A
MET
54
-144.09
-44.59
12
A
LYS
57
47.61
-162.39
13
A
GLN
44
-150.45
20.78
13
A
LYS
55
-157.05
-45.84
14
A
GLN
44
-147.06
19.77
14
A
TRP
56
-133.00
-49.01
15
A
GLN
44
-156.40
28.40
15
A
ARG
53
-105.84
63.92
15
A
MET
54
165.47
-28.82
15
A
LYS
57
179.54
-179.83
16
A
LYS
57
70.60
-75.79
17
A
GLN
44
39.90
29.30
17
A
LYS
57
64.37
119.29
18
A
LYS
57
64.98
170.20
19
A
GLN
44
-147.62
-149.65
19
A
ILE
45
39.95
31.38
19
A
LYS
46
-164.04
-39.10
20
A
GLN
44
86.42
-13.66
Structure of penetratin in bicellar solution
1
N
N
A
TRP
48
A
TRP
6
HELX_P
A
LYS
57
A
LYS
15
1
1
10
DNA BINDING PROTEIN
unstructured at the terminals, alpha helical in the middle, DNA BINDING PROTEIN
ANTP_DROME
UNP
1
50
P02833
RQIKIWFQNRRMKWKK
339
354
1OMQ
43
58
P02833
A
1
1
16