0.020237 0.000000 0.000000 0.000000 0.013406 0.000000 0.000000 0.000000 0.012133 0.00000 0.00000 0.00000 Zhu, Z. Teng, M. Niu, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 49.415 74.593 82.419 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 R C N 89 S C N 90 R C N 91 S C N 92 S C N 93 N C N 94 N O N 95 N O N 96 N O N 97 N O N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C N 114 N O N 115 N C N 116 N C N 117 N C N 118 N O N 119 N N N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N O N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 N C N 152 N C N 153 N O N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C Y 165 N C Y 166 N N Y 167 N C Y 168 N C Y 169 N N N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 S C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N C N 235 N C N 236 N N N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N S N 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 R C N 274 R C N 275 R C N 276 S C N 277 R C N 278 N C N 279 N C N 280 N C N 281 N N N 282 N O N 283 N O N 284 N O N 285 N O N 286 N O N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N S N 358 N O N 359 N O N 360 N O N 361 N O N 362 N N N 363 S C N 364 N C N 365 N O N 366 R C N 367 N O N 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N N Y 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C N 417 N O N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C N 435 N C N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing Y 163 N sing Y 164 N doub Y 165 N doub N 166 N sing Y 167 N sing N 168 N sing Y 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing Y 301 N doub Y 302 N sing Y 303 N sing N 304 N sing Y 305 N doub N 306 N sing Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing US J.BIOL.CHEM. JBCHA3 0071 0021-9258 280 10524 10529 10.1074/jbc.M412900200 15632114 Crystal Structures and Amidolytic Activities of Two Glycosylated Snake Venom Serine Proteinases 2005 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 59 547 550 10.1107/S0907444902023375 12595722 Purification, N-terminal sequencing, partial characterization, crystallization and preliminary crystallographic analysis of two glycosylated serine proteinases from Agkistrodon acutus venom 2003 10.2210/pdb1op0/pdb pdb_00001op0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE 1999-07-06 MARRESEARCH GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 SEALED TUBE 25357.678 Venom serine proteinase 3.4.21.- 1 nat polymer 570.542 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 96.063 SULFATE ION 2 syn non-polymer 18.015 water 142 nat water snake venom serine proteinase, AaV-SP-I no no VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Chinese moccasin Deinagkistrodon sample 36307 Deinagkistrodon acutus venom gland 1 2.76 55.08 VAPOR DIFFUSION, HANGING DROP 6.3 lithium sulfate, sodium cacodylate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2004-05-25 1 1 2008-04-29 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-10-25 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession B NAG 301 n B NAG 1 B NAG 303 n B NAG 2 B FUC 302 n B FUC 3 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc The crystal structure of AaV-SP-II RCSB Y PDBJ 2003-03-04 REL REL oligosaccharide DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O6 FUC NAG 3 1 2 O1 HO6 sing n n n SO4 SULFATE ION HOH water 1BQY PDB ENTRY 1BQY PDB experimental model SO4 901 3 SO4 SO4 901 A SO4 501 3 SO4 SO4 501 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 608 4 HOH HOH 608 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 612 4 HOH HOH 612 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 644 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 656 4 HOH HOH 656 A HOH 657 4 HOH HOH 657 A HOH 658 4 HOH HOH 658 A HOH 659 4 HOH HOH 659 A HOH 660 4 HOH HOH 660 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 663 4 HOH HOH 663 A HOH 664 4 HOH HOH 664 A HOH 665 4 HOH HOH 665 A HOH 666 4 HOH HOH 666 A HOH 667 4 HOH HOH 667 A HOH 668 4 HOH HOH 668 A HOH 669 4 HOH HOH 669 A HOH 670 4 HOH HOH 670 A HOH 671 4 HOH HOH 671 A HOH 672 4 HOH HOH 672 A HOH 674 4 HOH HOH 674 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 678 4 HOH HOH 678 A HOH 679 4 HOH HOH 679 A HOH 680 4 HOH HOH 680 A HOH 681 4 HOH HOH 681 A HOH 682 4 HOH HOH 682 A HOH 683 4 HOH HOH 683 A HOH 684 4 HOH HOH 684 A HOH 685 4 HOH HOH 685 A HOH 686 4 HOH HOH 686 A HOH 687 4 HOH HOH 687 A HOH 688 4 HOH HOH 688 A HOH 689 4 HOH HOH 689 A HOH 690 4 HOH HOH 690 A HOH 691 4 HOH HOH 691 A HOH 692 4 HOH HOH 692 A HOH 693 4 HOH HOH 693 A HOH 694 4 HOH HOH 694 A HOH 695 4 HOH HOH 695 A HOH 696 4 HOH HOH 696 A HOH 697 4 HOH HOH 697 A HOH 698 4 HOH HOH 698 A HOH 699 4 HOH HOH 699 A HOH 700 4 HOH HOH 700 A HOH 701 4 HOH HOH 701 A HOH 702 4 HOH HOH 702 A HOH 703 4 HOH HOH 703 A HOH 704 4 HOH HOH 704 A HOH 705 4 HOH HOH 705 A HOH 706 4 HOH HOH 706 A HOH 707 4 HOH HOH 707 A HOH 708 4 HOH HOH 708 A HOH 709 4 HOH HOH 709 A HOH 710 4 HOH HOH 710 A HOH 711 4 HOH HOH 711 A HOH 712 4 HOH HOH 712 A HOH 714 4 HOH HOH 714 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 717 4 HOH HOH 717 A HOH 718 4 HOH HOH 718 A HOH 719 4 HOH HOH 719 A HOH 720 4 HOH HOH 720 A HOH 721 4 HOH HOH 721 A HOH 722 4 HOH HOH 722 A HOH 723 4 HOH HOH 723 A HOH 725 4 HOH HOH 725 A HOH 726 4 HOH HOH 726 A HOH 727 4 HOH HOH 727 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 730 4 HOH HOH 730 A HOH 732 4 HOH HOH 732 A HOH 733 4 HOH HOH 733 A HOH 734 4 HOH HOH 734 A HOH 735 4 HOH HOH 735 A HOH 736 4 HOH HOH 736 A HOH 740 4 HOH HOH 740 A HOH 741 4 HOH HOH 741 A HOH 742 4 HOH HOH 742 A HOH 744 4 HOH HOH 744 A HOH 745 4 HOH HOH 745 A HOH 746 4 HOH HOH 746 A HOH 747 4 HOH HOH 747 A HOH 748 4 HOH HOH 748 A HOH 749 4 HOH HOH 749 A HOH 750 4 HOH HOH 750 A VAL 16 n 1 VAL 16 A ILE 17 n 2 ILE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ASN 20 n 5 ASN 20 A GLU 21 n 6 GLU 21 A CYS 22 n 7 CYS 22 A ASP 23 n 8 ASP 23 A ILE 24 n 9 ILE 24 A ASN 25 n 10 ASN 25 A GLU 26 n 11 GLU 26 A HIS 27 n 12 HIS 27 A ARG 28 n 13 ARG 28 A PHE 29 n 14 PHE 29 A LEU 30 n 15 LEU 30 A VAL 31 n 16 VAL 31 A ALA 32 n 17 ALA 32 A PHE 33 n 18 PHE 33 A PHE 34 n 19 PHE 34 A ASN 35 n 20 ASN 35 A THR 36 n 21 THR 36 A THR 38 n 22 THR 38 A GLY 39 n 23 GLY 39 A PHE 40 n 24 PHE 40 A PHE 41 n 25 PHE 41 A CYS 42 n 26 CYS 42 A GLY 43 n 27 GLY 43 A GLY 44 n 28 GLY 44 A THR 45 n 29 THR 45 A LEU 46 n 30 LEU 46 A ILE 47 n 31 ILE 47 A ASN 48 n 32 ASN 48 A PRO 49 n 33 PRO 49 A GLU 50 n 34 GLU 50 A TRP 51 n 35 TRP 51 A VAL 52 n 36 VAL 52 A VAL 53 n 37 VAL 53 A THR 54 n 38 THR 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A ASP 59 n 43 ASP 59 A SER 60 n 44 SER 60 A THR 62 n 45 THR 62 A ASP 63 n 46 ASP 63 A PHE 64 n 47 PHE 64 A GLN 65 n 48 GLN 65 A MET 66 n 49 MET 66 A GLN 67 n 50 GLN 67 A LEU 68 n 51 LEU 68 A GLY 69 n 52 GLY 69 A VAL 70 n 53 VAL 70 A HIS 71 n 54 HIS 71 A SER 72 n 55 SER 72 A LYS 73 n 56 LYS 73 A LYS 74 n 57 LYS 74 A VAL 75 n 58 VAL 75 A LEU 76 n 59 LEU 76 A ASN 77 n 60 ASN 77 A GLU 78 n 61 GLU 78 A ASP 79 n 62 ASP 79 A GLU 80 n 63 GLU 80 A GLN 81 n 64 GLN 81 A THR 82 n 65 THR 82 A ARG 83 n 66 ARG 83 A ASN 84 n 67 ASN 84 A PRO 85 n 68 PRO 85 A LYS 86 n 69 LYS 86 A GLU 87 n 70 GLU 87 A LYS 88 n 71 LYS 88 A PHE 89 n 72 PHE 89 A ILE 90 n 73 ILE 90 A CYS 91 n 74 CYS 91 A PRO 92 n 75 PRO 92 A ASN 93 n 76 ASN 93 A LYS 94 n 77 LYS 94 A ASN 95 n 78 ASN 95 A ASN 95 n 79 A ASN 95 A ASN 96 n 80 ASN 96 A GLU 97 n 81 GLU 97 A VAL 98 n 82 VAL 98 A LEU 99 n 83 LEU 99 A ASP 100 n 84 ASP 100 A LYS 101 n 85 LYS 101 A ASP 102 n 86 ASP 102 A ILE 103 n 87 ILE 103 A MET 104 n 88 MET 104 A LEU 105 n 89 LEU 105 A ILE 106 n 90 ILE 106 A LYS 107 n 91 LYS 107 A LEU 108 n 92 LEU 108 A ASP 109 n 93 ASP 109 A LYS 110 n 94 LYS 110 A PRO 111 n 95 PRO 111 A ILE 112 n 96 ILE 112 A SER 113 n 97 SER 113 A ASN 114 n 98 ASN 114 A SER 115 n 99 SER 115 A LYS 116 n 100 LYS 116 A HIS 117 n 101 HIS 117 A ILE 118 n 102 ILE 118 A ALA 119 n 103 ALA 119 A PRO 120 n 104 PRO 120 A LEU 121 n 105 LEU 121 A SER 122 n 106 SER 122 A LEU 123 n 107 LEU 123 A PRO 124 n 108 PRO 124 A SER 125 n 109 SER 125 A SER 127 n 110 SER 127 A PRO 128 n 111 PRO 128 A PRO 129 n 112 PRO 129 A SER 131 n 113 SER 131 A VAL 132 n 114 VAL 132 A GLY 133 n 115 GLY 133 A SER 134 n 116 SER 134 A VAL 135 n 117 VAL 135 A CYS 136 n 118 CYS 136 A ARG 137 n 119 ARG 137 A ILE 138 n 120 ILE 138 A MET 139 n 121 MET 139 A GLY 140 n 122 GLY 140 A TRP 141 n 123 TRP 141 A GLY 142 n 124 GLY 142 A SER 143 n 125 SER 143 A ILE 144 n 126 ILE 144 A THR 145 n 127 THR 145 A PRO 146 n 128 PRO 146 A VAL 147 n 129 VAL 147 A LYS 148 n 130 LYS 148 A GLU 149 n 131 GLU 149 A THR 150 n 132 THR 150 A PHE 151 n 133 PHE 151 A PRO 152 n 134 PRO 152 A ASP 153 n 135 ASP 153 A VAL 154 n 136 VAL 154 A PRO 155 n 137 PRO 155 A TYR 156 n 138 TYR 156 A CYS 157 n 139 CYS 157 A ALA 158 n 140 ALA 158 A ASN 159 n 141 ASN 159 A ILE 160 n 142 ILE 160 A ASN 161 n 143 ASN 161 A LEU 162 n 144 LEU 162 A LEU 163 n 145 LEU 163 A ASP 164 n 146 ASP 164 A HIS 165 n 147 HIS 165 A ALA 166 n 148 ALA 166 A VAL 167 n 149 VAL 167 A CYS 168 n 150 CYS 168 A GLN 169 n 151 GLN 169 A ALA 170 n 152 ALA 170 A GLY 171 n 153 GLY 171 A TYR 172 n 154 TYR 172 A PRO 172 n 155 A PRO 172 A GLU 173 n 156 GLU 173 A LEU 174 n 157 LEU 174 A LEU 175 n 158 LEU 175 A ALA 176 n 159 ALA 176 A GLU 177 n 160 GLU 177 A TYR 178 n 161 TYR 178 A ARG 179 n 162 ARG 179 A THR 180 n 163 THR 180 A LEU 181 n 164 LEU 181 A CYS 182 n 165 CYS 182 A ALA 183 n 166 ALA 183 A GLY 184 n 167 GLY 184 A ILE 185 n 168 ILE 185 A VAL 186 n 169 VAL 186 A GLN 186 n 170 A GLN 186 A GLY 186 n 171 B GLY 186 A GLY 187 n 172 GLY 187 A LYS 188 n 173 LYS 188 A ASP 189 n 174 ASP 189 A THR 190 n 175 THR 190 A CYS 191 n 176 CYS 191 A GLY 192 n 177 GLY 192 A GLY 193 n 178 GLY 193 A ASP 194 n 179 ASP 194 A SER 195 n 180 SER 195 A GLY 196 n 181 GLY 196 A GLY 197 n 182 GLY 197 A PRO 198 n 183 PRO 198 A LEU 199 n 184 LEU 199 A ILE 200 n 185 ILE 200 A CYS 201 n 186 CYS 201 A ASN 202 n 187 ASN 202 A GLY 207 n 188 GLY 207 A GLN 208 n 189 GLN 208 A PHE 209 n 190 PHE 209 A GLN 210 n 191 GLN 210 A GLY 211 n 192 GLY 211 A ILE 212 n 193 ILE 212 A VAL 213 n 194 VAL 213 A SER 214 n 195 SER 214 A TYR 215 n 196 TYR 215 A GLY 216 n 197 GLY 216 A ALA 217 n 198 ALA 217 A HIS 218 n 199 HIS 218 A PRO 219 n 200 PRO 219 A CYS 220 n 201 CYS 220 A GLY 221 n 202 GLY 221 A GLN 221 n 203 A GLN 221 A GLY 222 n 204 GLY 222 A PRO 223 n 205 PRO 223 A LYS 224 n 206 LYS 224 A PRO 225 n 207 PRO 225 A GLY 226 n 208 GLY 226 A ILE 227 n 209 ILE 227 A TYR 228 n 210 TYR 228 A THR 229 n 211 THR 229 A ASN 230 n 212 ASN 230 A VAL 231 n 213 VAL 231 A PHE 232 n 214 PHE 232 A ASP 233 n 215 ASP 233 A TYR 234 n 216 TYR 234 A THR 235 n 217 THR 235 A ASP 236 n 218 ASP 236 A TRP 237 n 219 TRP 237 A ILE 238 n 220 ILE 238 A GLN 239 n 221 GLN 239 A ARG 240 n 222 ARG 240 A ASN 241 n 223 ASN 241 A ILE 242 n 224 ILE 242 A ALA 243 n 225 ALA 243 A GLY 244 n 226 GLY 244 A ASN 245 n 227 ASN 245 A THR 245 n 228 A THR 245 A ASP 245 n 229 B ASP 245 A ALA 245 n 230 C ALA 245 A THR 245 n 231 D THR 245 A CYS 245 n 232 E CYS 245 A PRO 245 n 233 F PRO 245 A PRO 245 n 234 G PRO 245 A author_defined_assembly 1 monomeric A ASN 35 GLYCOSYLATION SITE A ASN 20 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 20 A O ASN 5 A N CYS 157 A N CYS 139 A O ILE 160 A O ILE 142 A N CYS 136 A N CYS 118 A N ARG 137 A N ARG 119 A O ILE 200 A O ILE 185 A O CYS 201 A O CYS 186 A N GLN 208 A N GLN 189 A O TYR 215 A O TYR 196 A N ILE 227 A N ILE 209 A O TYR 228 A O TYR 210 A N LEU 181 A N LEU 164 A O GLY 184 A O GLY 167 A N ASN 161 A N ASN 143 A N ARG 83 A N ARG 66 A O MET 66 A O MET 49 A N GLN 67 A N GLN 50 A O ALA 32 A O ALA 17 A N ASN 35 A N ASN 20 A O GLY 39 A O GLY 23 A N ILE 47 A N ILE 31 A O TRP 51 A O TRP 35 A O THR 54 A O THR 38 A N MET 104 A N MET 88 A O LYS 107 A O LYS 91 A N LYS 86 A N LYS 69 1 A PHE 41 -140.08 -8.16 1 A HIS 71 -128.93 -76.89 1 A ASN 93 -95.88 39.69 1 A VAL 147 -101.97 -61.62 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP CARBOHYDRATE.PARAM CARBOHYDRATE.TOP ION.PARAM ION.TOP 25.1 2.77 0.00 0.00 -2.74 0.00 -0.03 0.208 0.005 0.181 0.184 0.181 2.00 36.07 1935 19629 9.9 92.5 RANDOM 268424.98 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1BQY Engh & Huber FLAT MODEL 43.4156 0.352518 0.25 0.21 5.00 0.23 0.25 2.00 36.07 142 1966 48 0 1776 0.005 1.3 25.0 0.83 1.34 1.50 2.12 2.00 2.15 2.00 3.29 2.50 0.266 0.017 0.28 2.13 259 2472 6 9.5 78.8 11.4 2.00 50.00 1OP0 20865 20865 0.00 0.00 0.123 1 98.1 2.00 2.05 1 85.4 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing AMoRE Crystal Structure of AaV-SP-I, a Glycosylated Snake Venom Serine Proteinase from Agkistrodon acutus 1 N N 2 N N 3 N N 3 N N 4 N N A ALA 55 A ALA 39 HELX_P A ASP 59 A ASP 43 5 1 5 A ASP 164 A ASP 146 HELX_P A TYR 172 A TYR 154 1 2 9 A TYR 234 A TYR 216 HELX_P A GLY 244 A GLY 226 1 3 11 disulf 2.033 A CYS 22 A SG CYS 7 1_555 A CYS 157 A SG CYS 139 1_555 disulf 2.031 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.030 E A CYS 91 A SG CYS 74 1_555 A CYS 245 A SG CYS 232 1_555 disulf 2.027 A CYS 136 A SG CYS 118 1_555 A CYS 201 A SG CYS 186 1_555 disulf 2.028 A CYS 168 A SG CYS 150 1_555 A CYS 182 A SG CYS 165 1_555 disulf 2.030 A CYS 191 A SG CYS 176 1_555 A CYS 220 A SG CYS 201 1_555 covale 1.450 one N-Glycosylation A ASN 35 A ND2 ASN 20 1_555 B NAG 1 B C1 NAG 1_555 covale 1.383 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.402 both B NAG 1 B O6 NAG 1_555 B FUC 3 B C1 FUC 1_555 HYDROLASE snake venom, serine proteinase, glycoprotein, Agkistrodon acutus, hydrolase A HIS 218 A HIS 199 1 A PRO 219 A PRO 200 -0.03 VSP2_AGKAC UNP 1 25 Q9I8X1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP 25 258 1OP0 16 245 Q9I8X1 G A 1 1 234 1 ASN conflict ASP 63 1OP0 A Q9I8X1 UNP 70 46 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASN 20 A ASN 5 A GLU 21 A GLU 6 A TYR 156 A TYR 138 A LEU 163 A LEU 145 A VAL 135 A VAL 117 A GLY 140 A GLY 122 A PRO 198 A PRO 183 A CYS 201 A CYS 186 A GLN 208 A GLN 189 A TYR 215 A TYR 196 A GLY 226 A GLY 208 A ASN 230 A ASN 212 A THR 180 A THR 163 A GLY 184 A GLY 167 A TYR 156 A TYR 138 A LEU 163 A LEU 145 A GLN 81 A GLN 64 A ARG 83 A ARG 66 A GLN 65 A GLN 48 A LEU 68 A LEU 51 A LEU 30 A LEU 15 A ASN 35 A ASN 20 A GLY 39 A GLY 23 A ASN 48 A ASN 32 A TRP 51 A TRP 35 A THR 54 A THR 38 A MET 104 A MET 88 A LEU 108 A LEU 92 A PRO 85 A PRO 68 A ILE 90 A ILE 73 19 P 21 21 21