0.008373
0.000000
0.001418
0.000000
0.023348
0.000000
0.000000
0.000000
0.022569
0.00000
0.00000
0.00000
Zhu, Z.
Teng, M.
Niu, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
99.61
90.00
119.430
42.830
44.940
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.BIOL.CHEM.
JBCHA3
0071
0021-9258
280
10524
10529
10.1074/jbc.M412900200
15632114
Crystal Structures and Amidolytic Activities of Two Glycosylated Snake Venom Serine Proteinases
2005
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
547
550
10.1107/S0907444902023375
12595722
Purification, N-terminal sequencing, partial characterization, crystallization and preliminary crystallographic analysis of two glycosylated serine proteinases from Agkistrodon acutus venom
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
MARRESEARCH
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
SEALED TUBE
25356.693
Venom serine proteinase
3.4.21.-
1
nat
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
143
nat
water
snake venom serine proteinase, AaV-SP-I
no
no
VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN
EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE
YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN
EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE
YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chinese moccasin
Deinagkistrodon
sample
36307
Deinagkistrodon acutus
venom gland
1
2.09
40.64
VAPOR DIFFUSION, HANGING DROP
ammonium sulfate, PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Data collection
Derived calculations
Structure summary
1
0
2004-05-25
1
1
2008-04-29
1
2
2011-07-13
1
3
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
The Crystal Structure of AaV-SP-I
RCSB
Y
PDBJ
2003-03-04
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
SO4
SULFATE ION
HOH
water
NAG
301
2
NAG
NAG
301
A
SO4
401
3
SO4
SO4
401
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
700
4
HOH
HOH
700
A
HOH
701
4
HOH
HOH
701
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
709
4
HOH
HOH
709
A
HOH
710
4
HOH
HOH
710
A
HOH
711
4
HOH
HOH
711
A
HOH
712
4
HOH
HOH
712
A
HOH
713
4
HOH
HOH
713
A
HOH
715
4
HOH
HOH
715
A
HOH
716
4
HOH
HOH
716
A
HOH
717
4
HOH
HOH
717
A
HOH
718
4
HOH
HOH
718
A
HOH
720
4
HOH
HOH
720
A
HOH
721
4
HOH
HOH
721
A
HOH
722
4
HOH
HOH
722
A
HOH
723
4
HOH
HOH
723
A
HOH
724
4
HOH
HOH
724
A
HOH
725
4
HOH
HOH
725
A
HOH
726
4
HOH
HOH
726
A
HOH
727
4
HOH
HOH
727
A
HOH
728
4
HOH
HOH
728
A
HOH
730
4
HOH
HOH
730
A
HOH
731
4
HOH
HOH
731
A
HOH
732
4
HOH
HOH
732
A
HOH
733
4
HOH
HOH
733
A
HOH
734
4
HOH
HOH
734
A
HOH
735
4
HOH
HOH
735
A
HOH
737
4
HOH
HOH
737
A
HOH
740
4
HOH
HOH
740
A
HOH
742
4
HOH
HOH
742
A
HOH
743
4
HOH
HOH
743
A
HOH
744
4
HOH
HOH
744
A
HOH
745
4
HOH
HOH
745
A
HOH
749
4
HOH
HOH
749
A
HOH
750
4
HOH
HOH
750
A
HOH
751
4
HOH
HOH
751
A
HOH
752
4
HOH
HOH
752
A
HOH
753
4
HOH
HOH
753
A
HOH
754
4
HOH
HOH
754
A
HOH
757
4
HOH
HOH
757
A
HOH
758
4
HOH
HOH
758
A
HOH
759
4
HOH
HOH
759
A
HOH
762
4
HOH
HOH
762
A
HOH
763
4
HOH
HOH
763
A
HOH
765
4
HOH
HOH
765
A
VAL
16
n
1
VAL
16
A
ILE
17
n
2
ILE
17
A
GLY
18
n
3
GLY
18
A
GLY
19
n
4
GLY
19
A
ASN
20
n
5
ASN
20
A
GLU
21
n
6
GLU
21
A
CYS
22
n
7
CYS
22
A
ASP
23
n
8
ASP
23
A
ILE
24
n
9
ILE
24
A
ASN
25
n
10
ASN
25
A
GLU
26
n
11
GLU
26
A
HIS
27
n
12
HIS
27
A
ARG
28
n
13
ARG
28
A
PHE
29
n
14
PHE
29
A
LEU
30
n
15
LEU
30
A
VAL
31
n
16
VAL
31
A
ALA
32
n
17
ALA
32
A
PHE
33
n
18
PHE
33
A
PHE
34
n
19
PHE
34
A
ASN
35
n
20
ASN
35
A
THR
36
n
21
THR
36
A
THR
38
n
22
THR
38
A
GLY
39
n
23
GLY
39
A
PHE
40
n
24
PHE
40
A
PHE
41
n
25
PHE
41
A
CYS
42
n
26
CYS
42
A
GLY
43
n
27
GLY
43
A
GLY
44
n
28
GLY
44
A
THR
45
n
29
THR
45
A
LEU
46
n
30
LEU
46
A
ILE
47
n
31
ILE
47
A
ASN
48
n
32
ASN
48
A
PRO
49
n
33
PRO
49
A
GLU
50
n
34
GLU
50
A
TRP
51
n
35
TRP
51
A
VAL
52
n
36
VAL
52
A
VAL
53
n
37
VAL
53
A
THR
54
n
38
THR
54
A
ALA
55
n
39
ALA
55
A
ALA
56
n
40
ALA
56
A
HIS
57
n
41
HIS
57
A
CYS
58
n
42
CYS
58
A
ASP
59
n
43
ASP
59
A
SER
60
n
44
SER
60
A
THR
62
n
45
THR
62
A
ASN
63
n
46
ASN
63
A
PHE
64
n
47
PHE
64
A
GLN
65
n
48
GLN
65
A
MET
66
n
49
MET
66
A
GLN
67
n
50
GLN
67
A
LEU
68
n
51
LEU
68
A
GLY
69
n
52
GLY
69
A
VAL
70
n
53
VAL
70
A
HIS
71
n
54
HIS
71
A
SER
72
n
55
SER
72
A
LYS
73
n
56
LYS
73
A
LYS
74
n
57
LYS
74
A
VAL
75
n
58
VAL
75
A
LEU
76
n
59
LEU
76
A
ASN
77
n
60
ASN
77
A
GLU
78
n
61
GLU
78
A
ASP
79
n
62
ASP
79
A
GLU
80
n
63
GLU
80
A
GLN
81
n
64
GLN
81
A
THR
82
n
65
THR
82
A
ARG
83
n
66
ARG
83
A
ASN
84
n
67
ASN
84
A
PRO
85
n
68
PRO
85
A
LYS
86
n
69
LYS
86
A
GLU
87
n
70
GLU
87
A
LYS
88
n
71
LYS
88
A
PHE
89
n
72
PHE
89
A
ILE
90
n
73
ILE
90
A
CYS
91
n
74
CYS
91
A
PRO
92
n
75
PRO
92
A
ASN
93
n
76
ASN
93
A
LYS
94
n
77
LYS
94
A
ASN
95
n
78
ASN
95
A
ASN
95
n
79
A
ASN
95
A
ASN
96
n
80
ASN
96
A
GLU
97
n
81
GLU
97
A
VAL
98
n
82
VAL
98
A
LEU
99
n
83
LEU
99
A
ASP
100
n
84
ASP
100
A
LYS
101
n
85
LYS
101
A
ASP
102
n
86
ASP
102
A
ILE
103
n
87
ILE
103
A
MET
104
n
88
MET
104
A
LEU
105
n
89
LEU
105
A
ILE
106
n
90
ILE
106
A
LYS
107
n
91
LYS
107
A
LEU
108
n
92
LEU
108
A
ASP
109
n
93
ASP
109
A
LYS
110
n
94
LYS
110
A
PRO
111
n
95
PRO
111
A
ILE
112
n
96
ILE
112
A
SER
113
n
97
SER
113
A
ASN
114
n
98
ASN
114
A
SER
115
n
99
SER
115
A
LYS
116
n
100
LYS
116
A
HIS
117
n
101
HIS
117
A
ILE
118
n
102
ILE
118
A
ALA
119
n
103
ALA
119
A
PRO
120
n
104
PRO
120
A
LEU
121
n
105
LEU
121
A
SER
122
n
106
SER
122
A
LEU
123
n
107
LEU
123
A
PRO
124
n
108
PRO
124
A
SER
125
n
109
SER
125
A
SER
127
n
110
SER
127
A
PRO
128
n
111
PRO
128
A
PRO
129
n
112
PRO
129
A
SER
131
n
113
SER
131
A
VAL
132
n
114
VAL
132
A
GLY
133
n
115
GLY
133
A
SER
134
n
116
SER
134
A
VAL
135
n
117
VAL
135
A
CYS
136
n
118
CYS
136
A
ARG
137
n
119
ARG
137
A
ILE
138
n
120
ILE
138
A
MET
139
n
121
MET
139
A
GLY
140
n
122
GLY
140
A
TRP
141
n
123
TRP
141
A
GLY
142
n
124
GLY
142
A
SER
143
n
125
SER
143
A
ILE
144
n
126
ILE
144
A
THR
145
n
127
THR
145
A
PRO
146
n
128
PRO
146
A
VAL
147
n
129
VAL
147
A
LYS
148
n
130
LYS
148
A
GLU
149
n
131
GLU
149
A
THR
150
n
132
THR
150
A
PHE
151
n
133
PHE
151
A
PRO
152
n
134
PRO
152
A
ASP
153
n
135
ASP
153
A
VAL
154
n
136
VAL
154
A
PRO
155
n
137
PRO
155
A
TYR
156
n
138
TYR
156
A
CYS
157
n
139
CYS
157
A
ALA
158
n
140
ALA
158
A
ASN
159
n
141
ASN
159
A
ILE
160
n
142
ILE
160
A
ASN
161
n
143
ASN
161
A
LEU
162
n
144
LEU
162
A
LEU
163
n
145
LEU
163
A
ASP
164
n
146
ASP
164
A
HIS
165
n
147
HIS
165
A
ALA
166
n
148
ALA
166
A
VAL
167
n
149
VAL
167
A
CYS
168
n
150
CYS
168
A
GLN
169
n
151
GLN
169
A
ALA
170
n
152
ALA
170
A
GLY
171
n
153
GLY
171
A
TYR
172
n
154
TYR
172
A
PRO
172
n
155
A
PRO
172
A
GLU
173
n
156
GLU
173
A
LEU
174
n
157
LEU
174
A
LEU
175
n
158
LEU
175
A
ALA
176
n
159
ALA
176
A
GLU
177
n
160
GLU
177
A
TYR
178
n
161
TYR
178
A
ARG
179
n
162
ARG
179
A
THR
180
n
163
THR
180
A
LEU
181
n
164
LEU
181
A
CYS
182
n
165
CYS
182
A
ALA
183
n
166
ALA
183
A
GLY
184
n
167
GLY
184
A
ILE
185
n
168
ILE
185
A
VAL
186
n
169
VAL
186
A
GLN
186
n
170
A
GLN
186
A
GLY
186
n
171
B
GLY
186
A
GLY
187
n
172
GLY
187
A
LYS
188
n
173
LYS
188
A
ASP
189
n
174
ASP
189
A
THR
190
n
175
THR
190
A
CYS
191
n
176
CYS
191
A
GLY
192
n
177
GLY
192
A
GLY
193
n
178
GLY
193
A
ASP
194
n
179
ASP
194
A
SER
195
n
180
SER
195
A
GLY
196
n
181
GLY
196
A
GLY
197
n
182
GLY
197
A
PRO
198
n
183
PRO
198
A
LEU
199
n
184
LEU
199
A
ILE
200
n
185
ILE
200
A
CYS
201
n
186
CYS
201
A
ASN
202
n
187
ASN
202
A
GLY
207
n
188
GLY
207
A
GLN
208
n
189
GLN
208
A
PHE
209
n
190
PHE
209
A
GLN
210
n
191
GLN
210
A
GLY
211
n
192
GLY
211
A
ILE
212
n
193
ILE
212
A
VAL
213
n
194
VAL
213
A
SER
214
n
195
SER
214
A
TYR
215
n
196
TYR
215
A
GLY
216
n
197
GLY
216
A
ALA
217
n
198
ALA
217
A
HIS
218
n
199
HIS
218
A
PRO
219
n
200
PRO
219
A
CYS
220
n
201
CYS
220
A
GLY
221
n
202
GLY
221
A
GLN
221
n
203
A
GLN
221
A
GLY
222
n
204
GLY
222
A
PRO
223
n
205
PRO
223
A
LYS
224
n
206
LYS
224
A
PRO
225
n
207
PRO
225
A
GLY
226
n
208
GLY
226
A
ILE
227
n
209
ILE
227
A
TYR
228
n
210
TYR
228
A
THR
229
n
211
THR
229
A
ASN
230
n
212
ASN
230
A
VAL
231
n
213
VAL
231
A
PHE
232
n
214
PHE
232
A
ASP
233
n
215
ASP
233
A
TYR
234
n
216
TYR
234
A
THR
235
n
217
THR
235
A
ASP
236
n
218
ASP
236
A
TRP
237
n
219
TRP
237
A
ILE
238
n
220
ILE
238
A
GLN
239
n
221
GLN
239
A
ARG
240
n
222
ARG
240
A
ASN
241
n
223
ASN
241
A
ILE
242
n
224
ILE
242
A
ALA
243
n
225
ALA
243
A
GLY
244
n
226
GLY
244
A
ASN
245
n
227
ASN
245
A
THR
245
n
228
A
THR
245
A
ASP
245
n
229
B
ASP
245
A
ALA
245
n
230
C
ALA
245
A
THR
245
n
231
D
THR
245
A
CYS
245
n
232
E
CYS
245
A
PRO
245
n
233
F
PRO
245
A
PRO
245
n
234
G
PRO
245
A
author_defined_assembly
1
monomeric
A
ASN
35
GLYCOSYLATION SITE
A
ASN
20
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
20
A
O
ASN
5
A
N
CYS
157
A
N
CYS
139
A
O
ILE
160
A
O
ILE
142
A
N
CYS
136
A
N
CYS
118
A
N
MET
139
A
N
MET
121
A
O
PRO
198
A
O
PRO
183
A
O
CYS
201
A
O
CYS
186
A
N
GLN
208
A
N
GLN
189
A
O
TYR
215
A
O
TYR
196
A
N
ILE
227
A
N
ILE
209
A
O
TYR
228
A
O
TYR
210
A
N
LEU
181
A
N
LEU
164
A
N
GLY
184
A
N
GLY
167
A
O
ASN
161
A
O
ASN
143
A
N
ARG
83
A
N
ARG
66
A
O
MET
66
A
O
MET
49
A
N
GLN
67
A
N
GLN
50
A
O
ALA
32
A
O
ALA
17
A
O
ASN
35
A
O
ASN
20
A
N
GLY
39
A
N
GLY
23
A
N
ILE
47
A
N
ILE
31
A
O
TRP
51
A
O
TRP
35
A
O
THR
54
A
O
THR
38
A
N
MET
104
A
N
MET
88
A
O
LYS
107
A
O
LYS
91
A
N
LYS
86
A
N
LYS
69
1
A
PHE
41
-140.08
-12.65
1
A
HIS
71
-125.43
-79.02
1
A
ASN
93
-96.22
46.81
A
1
A
ASN
95
-69.45
6.43
1
A
ALA
119
-170.70
138.46
1
A
VAL
147
-103.56
-72.27
A
1
A
THR
245
46.64
16.21
C
1
A
ALA
245
-44.48
150.72
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
ION.PARAM
ION.TOP
20.3
-2.15
0.00
-0.88
6.62
0.00
-4.47
0.211
0.006
0.165
0.169
0.165
2.10
19.90
1222
11866
10.3
89.3
RANDOM
3881980.15
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
45.9892
0.325442
0.26
0.20
5.00
0.25
0.17
2.10
19.90
143
1938
19
0
1776
0.005
1.3
25.2
0.79
1.33
1.50
2.07
2.00
2.05
2.00
3.03
2.50
0.254
0.019
0.205
2.23
179
1578
6
10.2
79.6
8.3
2.10
20.00
1OP2
12259
12259
0.00
1
92.3
2.10
2.15
1
79.1
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Venom serine proteinase(E.C.3.4.21.-)
Crystal Structure of AaV-SP-II, a Glycosylated Snake Venom Serine Proteinase from Agkistrodon acutus
1
N
N
2
N
N
3
N
N
4
N
N
A
ALA
55
A
ALA
39
HELX_P
A
ASP
59
A
ASP
43
5
1
5
A
ASP
164
A
ASP
146
HELX_P
A
TYR
172
A
TYR
154
1
2
9
A
TYR
234
A
TYR
216
HELX_P
A
GLY
244
A
GLY
226
1
3
11
disulf
2.028
A
CYS
22
A
SG
CYS
7
1_555
A
CYS
157
A
SG
CYS
139
1_555
disulf
2.029
A
CYS
42
A
SG
CYS
26
1_555
A
CYS
58
A
SG
CYS
42
1_555
disulf
2.025
E
A
CYS
91
A
SG
CYS
74
1_555
A
CYS
245
A
SG
CYS
232
1_555
disulf
2.029
A
CYS
136
A
SG
CYS
118
1_555
A
CYS
201
A
SG
CYS
186
1_555
disulf
2.031
A
CYS
168
A
SG
CYS
150
1_555
A
CYS
182
A
SG
CYS
165
1_555
disulf
2.033
A
CYS
191
A
SG
CYS
176
1_555
A
CYS
220
A
SG
CYS
201
1_555
covale
1.451
one
N-Glycosylation
A
ASN
35
A
ND2
ASN
20
1_555
A
NAG
301
B
C1
NAG
1_555
HYDROLASE
snake venom, serine proteinase, glycoprotein, Agkistrodon acutus, hydrolase
A
HIS
218
A
HIS
199
1
A
PRO
219
A
PRO
200
-0.14
VSP2_AGKAC
UNP
1
25
Q9I8X1
VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN
EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE
YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
25
258
1OP2
16
245
Q9I8X1
G
A
1
1
234
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASN
20
A
ASN
5
A
GLU
21
A
GLU
6
A
TYR
156
A
TYR
138
A
LEU
163
A
LEU
145
A
VAL
135
A
VAL
117
A
GLY
140
A
GLY
122
A
PRO
198
A
PRO
183
A
CYS
201
A
CYS
186
A
GLN
208
A
GLN
189
A
TYR
215
A
TYR
196
A
GLY
226
A
GLY
208
A
ASN
230
A
ASN
212
A
THR
180
A
THR
163
A
GLY
184
A
GLY
167
A
TYR
156
A
TYR
138
A
LEU
163
A
LEU
145
A
GLN
81
A
GLN
64
A
ARG
83
A
ARG
66
A
GLN
65
A
GLN
48
A
LEU
68
A
LEU
51
A
LEU
30
A
LEU
15
A
ASN
35
A
ASN
20
A
GLY
39
A
GLY
23
A
ASN
48
A
ASN
32
A
TRP
51
A
TRP
35
A
THR
54
A
THR
38
A
MET
104
A
MET
88
A
LEU
108
A
LEU
92
A
PRO
85
A
PRO
68
A
ILE
90
A
ILE
73
5
C 1 2 1