1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Koch, A.W.
Farooq, A.
Shan, W.
Zeng, L.
Colman, D.R.
Zhou, M.-M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
12
793
805
10.1016/j.str.2004.02.034
15130472
Structure of the Neural (N-) Cadherin Prodomain Reveals a Cadherin Extracellular Domain-like Fold without Adhesive Characteristics
2004
10.2210/pdb1op4/pdb
pdb_00001op4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
18336.389
Neural-cadherin
1
man
polymer
N-cadherin, Cadherin-2
no
no
GHHHHHHHHHHSSGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK
VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR
GHHHHHHHHHHSSGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK
VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
CDH2
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
Bl21 (DE3)
plasmid
pET-19b
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-03-16
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2003-03-04
REL
The structure was determined using triple-resonance NMR spectroscopy
structures with the lowest energy
200
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
6.0
1
atm
303
K
distance geometry, simulated annealing, molecular dynamics
1
lowest energy
1mM N-cadherin prodomain (15N,13C), 50mM phosphate buffer
90% H2O/10% D2O
processing
NMRPipe
structure solution
X-PLOR
collection
XwinNMR
refinement
ARIA
500
Bruker
DRX
600
Bruker
DRX
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
GLU
24
n
24
GLU
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
ILE
29
n
29
ILE
29
A
ALA
30
n
30
ALA
30
A
LEU
31
n
31
LEU
31
A
CYS
32
n
32
CYS
32
A
LYS
33
n
33
LYS
33
A
THR
34
n
34
THR
34
A
GLY
35
n
35
GLY
35
A
PHE
36
n
36
PHE
36
A
PRO
37
n
37
PRO
37
A
GLU
38
n
38
GLU
38
A
ASP
39
n
39
ASP
39
A
VAL
40
n
40
VAL
40
A
TYR
41
n
41
TYR
41
A
SER
42
n
42
SER
42
A
ALA
43
n
43
ALA
43
A
VAL
44
n
44
VAL
44
A
LEU
45
n
45
LEU
45
A
PRO
46
n
46
PRO
46
A
LYS
47
n
47
LYS
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
HIS
50
n
50
HIS
50
A
GLU
51
n
51
GLU
51
A
GLY
52
n
52
GLY
52
A
GLN
53
n
53
GLN
53
A
PRO
54
n
54
PRO
54
A
LEU
55
n
55
LEU
55
A
LEU
56
n
56
LEU
56
A
ASN
57
n
57
ASN
57
A
VAL
58
n
58
VAL
58
A
LYS
59
n
59
LYS
59
A
PHE
60
n
60
PHE
60
A
SER
61
n
61
SER
61
A
ASN
62
n
62
ASN
62
A
CYS
63
n
63
CYS
63
A
ASN
64
n
64
ASN
64
A
ARG
65
n
65
ARG
65
A
LYS
66
n
66
LYS
66
A
ARG
67
n
67
ARG
67
A
LYS
68
n
68
LYS
68
A
VAL
69
n
69
VAL
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
GLU
72
n
72
GLU
72
A
SER
73
n
73
SER
73
A
SER
74
n
74
SER
74
A
GLU
75
n
75
GLU
75
A
PRO
76
n
76
PRO
76
A
ALA
77
n
77
ALA
77
A
ASP
78
n
78
ASP
78
A
PHE
79
n
79
PHE
79
A
LYS
80
n
80
LYS
80
A
VAL
81
n
81
VAL
81
A
ASP
82
n
82
ASP
82
A
GLU
83
n
83
GLU
83
A
ASP
84
n
84
ASP
84
A
GLY
85
n
85
GLY
85
A
THR
86
n
86
THR
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ALA
89
n
89
ALA
89
A
VAL
90
n
90
VAL
90
A
ARG
91
n
91
ARG
91
A
SER
92
n
92
SER
92
A
PHE
93
n
93
PHE
93
A
PRO
94
n
94
PRO
94
A
LEU
95
n
95
LEU
95
A
THR
96
n
96
THR
96
A
ALA
97
n
97
ALA
97
A
GLU
98
n
98
GLU
98
A
GLN
99
n
99
GLN
99
A
ALA
100
n
100
ALA
100
A
LYS
101
n
101
LYS
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
TYR
105
n
105
TYR
105
A
ALA
106
n
106
ALA
106
A
GLN
107
n
107
GLN
107
A
ASP
108
n
108
ASP
108
A
LYS
109
n
109
LYS
109
A
GLU
110
n
110
GLU
110
A
THR
111
n
111
THR
111
A
GLN
112
n
112
GLN
112
A
GLU
113
n
113
GLU
113
A
LYS
114
n
114
LYS
114
A
TRP
115
n
115
TRP
115
A
GLN
116
n
116
GLN
116
A
VAL
117
n
117
VAL
117
A
ALA
118
n
118
ALA
118
A
VAL
119
n
119
VAL
119
A
ASN
120
n
120
ASN
120
A
LEU
121
n
121
LEU
121
A
SER
122
n
122
SER
122
A
ARG
123
n
123
ARG
123
A
GLU
124
n
124
GLU
124
A
PRO
125
n
125
PRO
125
A
THR
126
n
126
THR
126
A
LEU
127
n
127
LEU
127
A
THR
128
n
128
THR
128
A
GLU
129
n
129
GLU
129
A
GLU
130
n
130
GLU
130
A
PRO
131
n
131
PRO
131
A
MET
132
n
132
MET
132
A
LYS
133
n
133
LYS
133
A
GLU
134
n
134
GLU
134
A
PRO
135
n
135
PRO
135
A
HIS
136
n
136
HIS
136
A
GLU
137
n
137
GLU
137
A
ILE
138
n
138
ILE
138
A
GLU
139
n
139
GLU
139
A
GLU
140
n
140
GLU
140
A
ILE
141
n
141
ILE
141
A
VAL
142
n
142
VAL
142
A
PHE
143
n
143
PHE
143
A
PRO
144
n
144
PRO
144
A
ARG
145
n
145
ARG
145
A
GLN
146
n
146
GLN
146
A
LEU
147
n
147
LEU
147
A
ALA
148
n
148
ALA
148
A
LYS
149
n
149
LYS
149
A
HIS
150
n
150
HIS
150
A
SER
151
n
151
SER
151
A
GLY
152
n
152
GLY
152
A
ALA
153
n
153
ALA
153
A
LEU
154
n
154
LEU
154
A
GLN
155
n
155
GLN
155
A
ARG
156
n
156
ARG
156
A
GLN
157
n
157
GLN
157
A
LYS
158
n
158
LYS
158
A
ARG
159
n
159
ARG
159
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
41
A
N
TYR
41
A
O
ASN
120
A
O
ASN
120
A
O
LEU
121
A
O
LEU
121
A
N
ALA
100
A
N
ALA
100
A
O
GLN
107
A
O
GLN
107
A
N
GLN
70
A
N
GLN
70
A
N
LEU
56
A
N
LEU
56
A
O
VAL
87
A
O
VAL
87
A
O
THR
86
A
O
THR
86
A
N
ASP
82
A
N
ASP
82
1
A
GLY
1
A
GLY
1
1
Y
1
A
HIS
2
A
HIS
2
1
Y
1
A
HIS
3
A
HIS
3
1
Y
1
A
HIS
4
A
HIS
4
1
Y
1
A
HIS
5
A
HIS
5
1
Y
1
A
HIS
6
A
HIS
6
1
Y
1
A
HIS
7
A
HIS
7
1
Y
1
A
HIS
8
A
HIS
8
1
Y
1
A
HIS
9
A
HIS
9
1
Y
1
A
HIS
10
A
HIS
10
1
Y
1
A
HIS
11
A
HIS
11
1
Y
1
A
SER
12
A
SER
12
1
Y
1
A
SER
13
A
SER
13
1
Y
1
A
GLY
14
A
GLY
14
1
Y
1
A
HIS
15
A
HIS
15
1
Y
1
A
ILE
16
A
ILE
16
1
Y
1
A
ASP
17
A
ASP
17
1
Y
1
A
ASP
18
A
ASP
18
1
Y
1
A
ASP
19
A
ASP
19
1
Y
1
A
ASP
20
A
ASP
20
1
Y
1
A
LYS
21
A
LYS
21
1
Y
1
A
HIS
22
A
HIS
22
1
Y
1
A
MET
23
A
MET
23
1
Y
1
A
A
O
H
ASP
GLY
82
85
1.59
1
A
ALA
25
-170.28
31.52
1
A
GLU
28
-133.08
-78.77
1
A
ALA
30
-150.75
19.00
1
A
PRO
37
-86.81
33.70
1
A
ASP
39
-132.22
-159.21
1
A
PRO
54
-54.18
175.84
1
A
CYS
63
-174.11
-178.09
1
A
ASN
64
53.12
-144.50
1
A
LYS
66
57.79
115.25
1
A
ARG
67
-156.91
70.43
1
A
SER
74
-159.35
35.73
1
A
ALA
77
-61.32
-156.23
1
A
ARG
91
61.52
135.38
1
A
SER
92
-108.59
64.70
1
A
LEU
95
51.60
71.91
1
A
THR
96
-161.22
-80.59
1
A
GLU
124
-117.53
66.08
1
A
MET
132
-94.07
-67.42
1
A
GLU
134
-161.87
62.79
1
A
GLU
137
-154.30
34.16
1
A
ILE
141
-95.64
-67.69
1
A
PHE
143
52.58
85.16
1
A
PRO
144
-57.04
175.94
1
A
ARG
145
-141.75
54.53
1
A
LEU
147
-154.02
57.86
1
A
ARG
156
-150.82
20.78
Solution Structure of Neural Cadherin Prodomain
1
N
N
disulf
2.021
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
63
A
SG
CYS
63
1_555
CELL ADHESION
beta sandwich, cadherin-like domain, CELL ADHESION
A
PHE
93
A
PHE
93
1
A
PRO
94
A
PRO
94
-0.35
CADH2_MOUSE
UNP
1
24
P15116
EASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVRSFPLTAEQAKFL
IYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR
24
159
1OP4
24
159
P15116
A
1
24
159
1
expression tag
GLY
1
1OP4
A
P15116
UNP
1
1
expression tag
HIS
2
1OP4
A
P15116
UNP
2
1
expression tag
HIS
3
1OP4
A
P15116
UNP
3
1
expression tag
HIS
4
1OP4
A
P15116
UNP
4
1
expression tag
HIS
5
1OP4
A
P15116
UNP
5
1
expression tag
HIS
6
1OP4
A
P15116
UNP
6
1
expression tag
HIS
7
1OP4
A
P15116
UNP
7
1
expression tag
HIS
8
1OP4
A
P15116
UNP
8
1
expression tag
HIS
9
1OP4
A
P15116
UNP
9
1
expression tag
HIS
10
1OP4
A
P15116
UNP
10
1
expression tag
HIS
11
1OP4
A
P15116
UNP
11
1
expression tag
SER
12
1OP4
A
P15116
UNP
12
1
expression tag
SER
13
1OP4
A
P15116
UNP
13
1
expression tag
GLY
14
1OP4
A
P15116
UNP
14
1
expression tag
HIS
15
1OP4
A
P15116
UNP
15
1
expression tag
ILE
16
1OP4
A
P15116
UNP
16
1
expression tag
ASP
17
1OP4
A
P15116
UNP
17
1
expression tag
ASP
18
1OP4
A
P15116
UNP
18
1
expression tag
ASP
19
1OP4
A
P15116
UNP
19
1
expression tag
ASP
20
1OP4
A
P15116
UNP
20
1
expression tag
LYS
21
1OP4
A
P15116
UNP
21
1
expression tag
HIS
22
1OP4
A
P15116
UNP
22
1
expression tag
MET
23
1OP4
A
P15116
UNP
23
4
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
40
A
VAL
40
A
ALA
43
A
ALA
43
A
GLU
113
A
GLU
113
A
LEU
121
A
LEU
121
A
ALA
100
A
ALA
100
A
ASP
108
A
ASP
108
A
VAL
69
A
VAL
69
A
GLU
72
A
GLU
72
A
LEU
55
A
LEU
55
A
ASN
57
A
ASN
57
A
THR
86
A
THR
86
A
VAL
90
A
VAL
90
A
ASP
78
A
ASP
78
A
ASP
82
A
ASP
82