1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Koch, A.W. Farooq, A. Shan, W. Zeng, L. Colman, D.R. Zhou, M.-M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 12 793 805 10.1016/j.str.2004.02.034 15130472 Structure of the Neural (N-) Cadherin Prodomain Reveals a Cadherin Extracellular Domain-like Fold without Adhesive Characteristics 2004 10.2210/pdb1op4/pdb pdb_00001op4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 18336.389 Neural-cadherin 1 man polymer N-cadherin, Cadherin-2 no no GHHHHHHHHHHSSGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR GHHHHHHHHHHSSGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample CDH2 10090 Mus musculus 469008 Escherichia coli BL21(DE3) Bl21 (DE3) plasmid pET-19b database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-03-16 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y RCSB 2003-03-04 REL The structure was determined using triple-resonance NMR spectroscopy structures with the lowest energy 200 1 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 6.0 1 atm 303 K distance geometry, simulated annealing, molecular dynamics 1 lowest energy 1mM N-cadherin prodomain (15N,13C), 50mM phosphate buffer 90% H2O/10% D2O processing NMRPipe structure solution X-PLOR collection XwinNMR refinement ARIA 500 Bruker DRX 600 Bruker DRX n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A n 20 20 A n 21 21 A n 22 22 A n 23 23 A GLU 24 n 24 GLU 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A ILE 29 n 29 ILE 29 A ALA 30 n 30 ALA 30 A LEU 31 n 31 LEU 31 A CYS 32 n 32 CYS 32 A LYS 33 n 33 LYS 33 A THR 34 n 34 THR 34 A GLY 35 n 35 GLY 35 A PHE 36 n 36 PHE 36 A PRO 37 n 37 PRO 37 A GLU 38 n 38 GLU 38 A ASP 39 n 39 ASP 39 A VAL 40 n 40 VAL 40 A TYR 41 n 41 TYR 41 A SER 42 n 42 SER 42 A ALA 43 n 43 ALA 43 A VAL 44 n 44 VAL 44 A LEU 45 n 45 LEU 45 A PRO 46 n 46 PRO 46 A LYS 47 n 47 LYS 47 A ASP 48 n 48 ASP 48 A VAL 49 n 49 VAL 49 A HIS 50 n 50 HIS 50 A GLU 51 n 51 GLU 51 A GLY 52 n 52 GLY 52 A GLN 53 n 53 GLN 53 A PRO 54 n 54 PRO 54 A LEU 55 n 55 LEU 55 A LEU 56 n 56 LEU 56 A ASN 57 n 57 ASN 57 A VAL 58 n 58 VAL 58 A LYS 59 n 59 LYS 59 A PHE 60 n 60 PHE 60 A SER 61 n 61 SER 61 A ASN 62 n 62 ASN 62 A CYS 63 n 63 CYS 63 A ASN 64 n 64 ASN 64 A ARG 65 n 65 ARG 65 A LYS 66 n 66 LYS 66 A ARG 67 n 67 ARG 67 A LYS 68 n 68 LYS 68 A VAL 69 n 69 VAL 69 A GLN 70 n 70 GLN 70 A TYR 71 n 71 TYR 71 A GLU 72 n 72 GLU 72 A SER 73 n 73 SER 73 A SER 74 n 74 SER 74 A GLU 75 n 75 GLU 75 A PRO 76 n 76 PRO 76 A ALA 77 n 77 ALA 77 A ASP 78 n 78 ASP 78 A PHE 79 n 79 PHE 79 A LYS 80 n 80 LYS 80 A VAL 81 n 81 VAL 81 A ASP 82 n 82 ASP 82 A GLU 83 n 83 GLU 83 A ASP 84 n 84 ASP 84 A GLY 85 n 85 GLY 85 A THR 86 n 86 THR 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ALA 89 n 89 ALA 89 A VAL 90 n 90 VAL 90 A ARG 91 n 91 ARG 91 A SER 92 n 92 SER 92 A PHE 93 n 93 PHE 93 A PRO 94 n 94 PRO 94 A LEU 95 n 95 LEU 95 A THR 96 n 96 THR 96 A ALA 97 n 97 ALA 97 A GLU 98 n 98 GLU 98 A GLN 99 n 99 GLN 99 A ALA 100 n 100 ALA 100 A LYS 101 n 101 LYS 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ILE 104 n 104 ILE 104 A TYR 105 n 105 TYR 105 A ALA 106 n 106 ALA 106 A GLN 107 n 107 GLN 107 A ASP 108 n 108 ASP 108 A LYS 109 n 109 LYS 109 A GLU 110 n 110 GLU 110 A THR 111 n 111 THR 111 A GLN 112 n 112 GLN 112 A GLU 113 n 113 GLU 113 A LYS 114 n 114 LYS 114 A TRP 115 n 115 TRP 115 A GLN 116 n 116 GLN 116 A VAL 117 n 117 VAL 117 A ALA 118 n 118 ALA 118 A VAL 119 n 119 VAL 119 A ASN 120 n 120 ASN 120 A LEU 121 n 121 LEU 121 A SER 122 n 122 SER 122 A ARG 123 n 123 ARG 123 A GLU 124 n 124 GLU 124 A PRO 125 n 125 PRO 125 A THR 126 n 126 THR 126 A LEU 127 n 127 LEU 127 A THR 128 n 128 THR 128 A GLU 129 n 129 GLU 129 A GLU 130 n 130 GLU 130 A PRO 131 n 131 PRO 131 A MET 132 n 132 MET 132 A LYS 133 n 133 LYS 133 A GLU 134 n 134 GLU 134 A PRO 135 n 135 PRO 135 A HIS 136 n 136 HIS 136 A GLU 137 n 137 GLU 137 A ILE 138 n 138 ILE 138 A GLU 139 n 139 GLU 139 A GLU 140 n 140 GLU 140 A ILE 141 n 141 ILE 141 A VAL 142 n 142 VAL 142 A PHE 143 n 143 PHE 143 A PRO 144 n 144 PRO 144 A ARG 145 n 145 ARG 145 A GLN 146 n 146 GLN 146 A LEU 147 n 147 LEU 147 A ALA 148 n 148 ALA 148 A LYS 149 n 149 LYS 149 A HIS 150 n 150 HIS 150 A SER 151 n 151 SER 151 A GLY 152 n 152 GLY 152 A ALA 153 n 153 ALA 153 A LEU 154 n 154 LEU 154 A GLN 155 n 155 GLN 155 A ARG 156 n 156 ARG 156 A GLN 157 n 157 GLN 157 A LYS 158 n 158 LYS 158 A ARG 159 n 159 ARG 159 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 41 A N TYR 41 A O ASN 120 A O ASN 120 A O LEU 121 A O LEU 121 A N ALA 100 A N ALA 100 A O GLN 107 A O GLN 107 A N GLN 70 A N GLN 70 A N LEU 56 A N LEU 56 A O VAL 87 A O VAL 87 A O THR 86 A O THR 86 A N ASP 82 A N ASP 82 1 A GLY 1 A GLY 1 1 Y 1 A HIS 2 A HIS 2 1 Y 1 A HIS 3 A HIS 3 1 Y 1 A HIS 4 A HIS 4 1 Y 1 A HIS 5 A HIS 5 1 Y 1 A HIS 6 A HIS 6 1 Y 1 A HIS 7 A HIS 7 1 Y 1 A HIS 8 A HIS 8 1 Y 1 A HIS 9 A HIS 9 1 Y 1 A HIS 10 A HIS 10 1 Y 1 A HIS 11 A HIS 11 1 Y 1 A SER 12 A SER 12 1 Y 1 A SER 13 A SER 13 1 Y 1 A GLY 14 A GLY 14 1 Y 1 A HIS 15 A HIS 15 1 Y 1 A ILE 16 A ILE 16 1 Y 1 A ASP 17 A ASP 17 1 Y 1 A ASP 18 A ASP 18 1 Y 1 A ASP 19 A ASP 19 1 Y 1 A ASP 20 A ASP 20 1 Y 1 A LYS 21 A LYS 21 1 Y 1 A HIS 22 A HIS 22 1 Y 1 A MET 23 A MET 23 1 Y 1 A A O H ASP GLY 82 85 1.59 1 A ALA 25 -170.28 31.52 1 A GLU 28 -133.08 -78.77 1 A ALA 30 -150.75 19.00 1 A PRO 37 -86.81 33.70 1 A ASP 39 -132.22 -159.21 1 A PRO 54 -54.18 175.84 1 A CYS 63 -174.11 -178.09 1 A ASN 64 53.12 -144.50 1 A LYS 66 57.79 115.25 1 A ARG 67 -156.91 70.43 1 A SER 74 -159.35 35.73 1 A ALA 77 -61.32 -156.23 1 A ARG 91 61.52 135.38 1 A SER 92 -108.59 64.70 1 A LEU 95 51.60 71.91 1 A THR 96 -161.22 -80.59 1 A GLU 124 -117.53 66.08 1 A MET 132 -94.07 -67.42 1 A GLU 134 -161.87 62.79 1 A GLU 137 -154.30 34.16 1 A ILE 141 -95.64 -67.69 1 A PHE 143 52.58 85.16 1 A PRO 144 -57.04 175.94 1 A ARG 145 -141.75 54.53 1 A LEU 147 -154.02 57.86 1 A ARG 156 -150.82 20.78 Solution Structure of Neural Cadherin Prodomain 1 N N disulf 2.021 A CYS 32 A SG CYS 32 1_555 A CYS 63 A SG CYS 63 1_555 CELL ADHESION beta sandwich, cadherin-like domain, CELL ADHESION A PHE 93 A PHE 93 1 A PRO 94 A PRO 94 -0.35 CADH2_MOUSE UNP 1 24 P15116 EASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVRSFPLTAEQAKFL IYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQRQKR 24 159 1OP4 24 159 P15116 A 1 24 159 1 expression tag GLY 1 1OP4 A P15116 UNP 1 1 expression tag HIS 2 1OP4 A P15116 UNP 2 1 expression tag HIS 3 1OP4 A P15116 UNP 3 1 expression tag HIS 4 1OP4 A P15116 UNP 4 1 expression tag HIS 5 1OP4 A P15116 UNP 5 1 expression tag HIS 6 1OP4 A P15116 UNP 6 1 expression tag HIS 7 1OP4 A P15116 UNP 7 1 expression tag HIS 8 1OP4 A P15116 UNP 8 1 expression tag HIS 9 1OP4 A P15116 UNP 9 1 expression tag HIS 10 1OP4 A P15116 UNP 10 1 expression tag HIS 11 1OP4 A P15116 UNP 11 1 expression tag SER 12 1OP4 A P15116 UNP 12 1 expression tag SER 13 1OP4 A P15116 UNP 13 1 expression tag GLY 14 1OP4 A P15116 UNP 14 1 expression tag HIS 15 1OP4 A P15116 UNP 15 1 expression tag ILE 16 1OP4 A P15116 UNP 16 1 expression tag ASP 17 1OP4 A P15116 UNP 17 1 expression tag ASP 18 1OP4 A P15116 UNP 18 1 expression tag ASP 19 1OP4 A P15116 UNP 19 1 expression tag ASP 20 1OP4 A P15116 UNP 20 1 expression tag LYS 21 1OP4 A P15116 UNP 21 1 expression tag HIS 22 1OP4 A P15116 UNP 22 1 expression tag MET 23 1OP4 A P15116 UNP 23 4 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 40 A VAL 40 A ALA 43 A ALA 43 A GLU 113 A GLU 113 A LEU 121 A LEU 121 A ALA 100 A ALA 100 A ASP 108 A ASP 108 A VAL 69 A VAL 69 A GLU 72 A GLU 72 A LEU 55 A LEU 55 A ASN 57 A ASN 57 A THR 86 A THR 86 A VAL 90 A VAL 90 A ASP 78 A ASP 78 A ASP 82 A ASP 82