1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Leeper, T.
Leulliot, N.
Varani, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
NUCLEIC ACIDS RES.
NARHAD
0389
0305-1048
31
2614
2621
10.1093/nar/gkg351
12736311
The solution structure of an essential stem-loop of human telomerase RNA
2003
10.2210/pdb1oq0/pdb
pdb_00001oq0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4824.897
P6.1 RNA hairpin from hTR
1
syn
polymer
no
no
GAGAGUUGGGCUCUC
GAGAGUUGGGCUCUC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
2.900
1
19
A
1
A
15
5.757
A_G1:C15_A
1
-13.687
-0.116
0.050
-0.091
6.637
1
20
A
2
A
14
-4.261
A_A2:U14_A
2
-5.875
0.199
0.726
-0.478
-4.015
1
19
A
3
A
13
0.801
A_G3:C13_A
3
-5.646
0.189
-0.101
-0.188
-10.285
1
20
A
4
A
12
-8.241
A_A4:U12_A
4
-5.585
0.322
0.176
-0.302
5.617
1
19
A
5
A
11
-2.299
A_G5:C11_A
5
-11.388
0.132
0.382
-0.342
9.242
28
A
6
A
10
-12.963
A_U6:G10_A
6
25.336
1.409
-0.673
-0.447
0.783
29.716
A
A
1
2
53.622
A
A
15
14
2.960
23.461
0.967
-0.834
AA_G1A2:U14C15_AA
1
-7.534
17.220
16.739
-5.275
-3.058
2.478
47.315
A
A
2
3
41.965
A
A
14
13
3.865
31.007
0.111
-0.755
AA_A2G3:C13U14_AA
2
6.746
-9.130
35.559
-3.786
0.480
0.923
26.848
A
A
3
4
48.091
A
A
13
12
3.452
19.865
1.098
-1.783
AA_G3A4:U12C13_AA
3
-2.339
5.663
18.001
-7.970
-2.851
2.785
34.149
A
A
4
5
6.828
A
A
12
11
2.890
4.001
0.268
-0.747
AA_A4G5:C11U12_AA
4
-0.102
0.174
33.920
-1.824
-0.470
1.636
40.321
A
A
5
6
45.253
A
A
11
10
3.057
27.444
1.526
-1.340
AA_G5U6:G10C11_AA
5
15.397
-25.388
25.536
-4.720
-0.656
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-05-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2003-03-06
REL
In vitro transcribed RNA from T7 RNA polymerase and 13C and 15N NTPs or unlabeled NTPs
sample
structures with the lowest energy
100
20
2D NOESY
2D TOCSY
3D_13C-separated_NOESY
DQF-COSY
HCCH-COSY
2D NOESY
10 mM Na
6
300
K
10 mM Na
6
277
K
Torsion angle molecular dynamics with
simulated anealing in CNS version 5
1
lowest energy
0.8 mM RNA, 10 mM Sodium Phosphate, D20
D20
0.8 mM RNA, 10 mM Sodium Phosphate, 95% H20, 5% D20
95% H20, 5% D20
structure solution
CNS
5
collection
XwinNMR
3.X
processing
NMRPipe
data analysis
Sparky
3.91
refinement
CNS
5
500
Bruker
DRX
750
Bruker
DMX
800
Bruker
DRX
GUA
1
n
1
G
1
A
ADE
2
n
2
A
2
A
GUA
3
n
3
G
3
A
ADE
4
n
4
A
4
A
GUA
5
n
5
G
5
A
URI
6
n
6
U
6
A
URI
7
n
7
U
7
A
GUA
8
n
8
G
8
A
GUA
9
n
9
G
9
A
GUA
10
n
10
G
10
A
CYT
11
n
11
C
11
A
URI
12
n
12
U
12
A
CYT
13
n
13
C
13
A
URI
14
n
14
U
14
A
CYT
15
n
15
C
15
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
H61
O4
A
U
4
12
1.52
1
A
A
H61
O4
A
U
2
14
1.58
2
A
A
H61
O4
A
U
4
12
1.47
2
A
A
H61
O4
A
U
2
14
1.59
3
A
A
H61
O4
A
U
4
12
1.51
4
A
A
H61
O4
A
U
4
12
1.43
5
A
A
H61
O4
A
U
4
12
1.48
6
A
A
H61
O4
A
U
2
14
1.54
6
A
A
H61
O4
A
U
4
12
1.58
7
A
A
H61
O4
A
U
4
12
1.55
8
A
A
H61
O4
A
U
4
12
1.47
9
A
A
H61
O4
A
U
4
12
1.49
10
A
A
H61
O4
A
U
4
12
1.46
11
A
A
H61
O4
A
U
2
14
1.54
12
A
A
H61
O4
A
U
4
12
1.55
13
A
A
H61
O4
A
U
4
12
1.44
13
A
A
H61
O4
A
U
2
14
1.55
14
A
A
H61
O4
A
U
2
14
1.59
15
A
A
H61
O4
A
U
4
12
1.53
15
A
A
H1
N3
G
C
5
11
1.59
16
A
A
H61
O4
A
U
4
12
1.50
17
A
A
H61
O4
A
U
4
12
1.45
18
A
A
H61
O4
A
U
4
12
1.48
19
A
A
H61
O4
A
U
2
14
1.57
20
A
A
H61
O4
A
U
4
12
1.57
20
A
A
H61
O4
A
U
2
14
1.58
P6.1 stem loop from the activation domain of hTR
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
15
A
N3
C
15
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
15
A
O2
C
15
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
15
A
N4
C
15
1_555
hydrog
WATSON-CRICK
A
A
2
A
N1
A
2
1_555
A
U
14
A
N3
U
14
1_555
hydrog
WATSON-CRICK
A
A
2
A
N6
A
2
1_555
A
U
14
A
O4
U
14
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
12
A
N3
U
12
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
12
A
O4
U
12
1_555
hydrog
WATSON-CRICK
A
G
5
A
N1
G
5
1_555
A
C
11
A
N3
C
11
1_555
hydrog
WATSON-CRICK
A
G
5
A
N2
G
5
1_555
A
C
11
A
O2
C
11
1_555
hydrog
WATSON-CRICK
A
G
5
A
O6
G
5
1_555
A
C
11
A
N4
C
11
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
N3
U
6
1_555
A
G
10
A
O6
G
10
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
O2
U
6
1_555
A
G
10
A
N1
G
10
1_555
RNA
ribonucleoprotein, RNA structure, telomerase, telomeres, RNA
1OQ0
PDB
1
1OQ0
1
15
1OQ0
1
15
1OQ0
A
1
1
15