1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Banci, L.
Bertini, I.
Ciofi-Baffoni, S.
Gonnelli, L.
Su, X.C.
Structural Proteomics in Europe (SPINE)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
331
473
484
10.1016/S0022-2836(03)00769-1
12888353
A core mutation affecting the folding properties of a soluble domain of the ATPase protein CopA from Bacillus subtilis
2003
10.2210/pdb1oq3/pdb
pdb_00001oq3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
8174.431
Potential copper-transporting ATPase
3.6.3.4
N-terminal water soluble domain of CopA
S46V
1
man
polymer
no
no
MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIEGR
MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIEGR
A
CIRMMP05
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
YVGX
1423
Bacillus subtilis
562
Escherichia coli
pLysS
PLASMID
PET21a
Structural Proteomics in Europe
SPINE
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-16
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
the average structure
Y
RCSB
Y
RCSB
2003-03-07
REL
REL
3132 NOE cross peaks were assigned and integrated, providing 1960 unique upper distance limits, of which 1440 are meaningful. A total of 41 proton pairs were stereospecifically assigned.
The submitted conformer models are the 30 structures with the lowest violations
300
30
2D NOESY
2D TOCSY
3D_15N-separated_NOESY
HNHA
HNHB
20mM phosphate + 2mM DTT
7.0
1
atm
298
K
distance geometry,
simulated annealing,
molecular dynamics,
torsion angle dynamics
1.5 mM apoD1S46V, 20mM phosphate, 90%H2O, 10%D2O,2.0mDTT
90% H2O/10% D2O
Bruker
processing
XwinNMR
2.6
Xia, Bartels
structure solution
XEASY
1.3
Gunter, Mumenthaler, Wuthrich
structure solution
DYANA
1.5
Pearlman, Case, Caldwell, Ross, Cheatham, Ferguson, Seibel, Singh, Weiner, Kollman
refinement
Amber
5.0
800
Bruker
AVANCE
600
Bruker
AVANCE
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
SER
3
n
3
SER
3
A
GLU
4
n
4
GLU
4
A
GLN
5
n
5
GLN
5
A
LYS
6
n
6
LYS
6
A
GLU
7
n
7
GLU
7
A
ILE
8
n
8
ILE
8
A
ALA
9
n
9
ALA
9
A
MET
10
n
10
MET
10
A
GLN
11
n
11
GLN
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
MET
15
n
15
MET
15
A
THR
16
n
16
THR
16
A
CYS
17
n
17
CYS
17
A
ALA
18
n
18
ALA
18
A
ALA
19
n
19
ALA
19
A
CYS
20
n
20
CYS
20
A
ALA
21
n
21
ALA
21
A
ALA
22
n
22
ALA
22
A
ARG
23
n
23
ARG
23
A
ILE
24
n
24
ILE
24
A
GLU
25
n
25
GLU
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
ARG
30
n
30
ARG
30
A
MET
31
n
31
MET
31
A
PRO
32
n
32
PRO
32
A
GLY
33
n
33
GLY
33
A
VAL
34
n
34
VAL
34
A
THR
35
n
35
THR
35
A
ASP
36
n
36
ASP
36
A
ALA
37
n
37
ALA
37
A
ASN
38
n
38
ASN
38
A
VAL
39
n
39
VAL
39
A
ASN
40
n
40
ASN
40
A
LEU
41
n
41
LEU
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
GLU
44
n
44
GLU
44
A
THR
45
n
45
THR
45
A
VAL
46
n
46
VAL
46
A
ASN
47
n
47
ASN
47
A
VAL
48
n
48
VAL
48
A
ILE
49
n
49
ILE
49
A
TYR
50
n
50
TYR
50
A
ASP
51
n
51
ASP
51
A
PRO
52
n
52
PRO
52
A
ALA
53
n
53
ALA
53
A
GLU
54
n
54
GLU
54
A
THR
55
n
55
THR
55
A
GLY
56
n
56
GLY
56
A
THR
57
n
57
THR
57
A
ALA
58
n
58
ALA
58
A
ALA
59
n
59
ALA
59
A
ILE
60
n
60
ILE
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
LYS
63
n
63
LYS
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
LYS
66
n
66
LYS
66
A
LEU
67
n
67
LEU
67
A
GLY
68
n
68
GLY
68
A
TYR
69
n
69
TYR
69
A
HIS
70
n
70
HIS
70
A
VAL
71
n
71
VAL
71
A
VAL
72
n
72
VAL
72
A
ILE
73
n
73
ILE
73
A
GLU
74
n
74
GLU
74
A
GLY
75
n
75
GLY
75
A
ARG
76
n
76
ARG
76
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
38
A
N
ASN
38
A
O
ASN
47
A
O
ASN
47
A
O
TYR
50
A
O
TYR
50
A
N
LYS
6
A
N
LYS
6
A
N
SER
13
A
N
SER
13
A
O
HIS
70
A
O
HIS
70
1
A
A
GLU
THR
54
55
-148.11
3
A
A
GLU
THR
54
55
-143.51
5
A
A
GLU
THR
54
55
-146.49
11
A
A
GLU
THR
54
55
-143.29
12
A
A
GLU
THR
54
55
-143.29
14
A
A
GLU
THR
54
55
-145.75
1
A
TYR
50
0.082
SIDE CHAIN
2
A
TYR
69
0.166
SIDE CHAIN
2
A
HIS
70
0.087
SIDE CHAIN
3
A
TYR
50
0.093
SIDE CHAIN
4
A
TYR
50
0.084
SIDE CHAIN
5
A
TYR
50
0.108
SIDE CHAIN
6
A
TYR
50
0.097
SIDE CHAIN
6
A
TYR
69
0.098
SIDE CHAIN
6
A
HIS
70
0.075
SIDE CHAIN
7
A
TYR
50
0.130
SIDE CHAIN
8
A
TYR
50
0.077
SIDE CHAIN
9
A
TYR
50
0.109
SIDE CHAIN
9
A
HIS
70
0.100
SIDE CHAIN
10
A
TYR
50
0.138
SIDE CHAIN
11
A
TYR
50
0.095
SIDE CHAIN
12
A
TYR
50
0.095
SIDE CHAIN
13
A
TYR
50
0.072
SIDE CHAIN
14
A
TYR
50
0.131
SIDE CHAIN
15
A
TYR
50
0.083
SIDE CHAIN
16
A
TYR
50
0.089
SIDE CHAIN
17
A
TYR
50
0.097
SIDE CHAIN
17
A
ARG
76
0.087
SIDE CHAIN
18
A
TYR
50
0.108
SIDE CHAIN
19
A
TYR
50
0.105
SIDE CHAIN
19
A
HIS
70
0.112
SIDE CHAIN
19
A
ARG
76
0.082
SIDE CHAIN
20
A
ARG
30
0.080
SIDE CHAIN
20
A
TYR
50
0.100
SIDE CHAIN
21
A
TYR
50
0.079
SIDE CHAIN
21
A
HIS
70
0.098
SIDE CHAIN
22
A
TYR
50
0.138
SIDE CHAIN
22
A
TYR
69
0.080
SIDE CHAIN
22
A
HIS
70
0.110
SIDE CHAIN
23
A
TYR
50
0.066
SIDE CHAIN
23
A
HIS
70
0.117
SIDE CHAIN
24
A
TYR
50
0.073
SIDE CHAIN
25
A
TYR
50
0.068
SIDE CHAIN
26
A
TYR
50
0.092
SIDE CHAIN
26
A
TYR
69
0.081
SIDE CHAIN
27
A
TYR
50
0.093
SIDE CHAIN
28
A
TYR
50
0.111
SIDE CHAIN
29
A
TYR
50
0.140
SIDE CHAIN
30
A
TYR
50
0.103
SIDE CHAIN
22
-9.70
1.60
129.70
120.00
A
A
A
CB
CG
CD2
HIS
HIS
HIS
70
70
70
N
1
A
LEU
2
-71.43
-76.75
1
A
CYS
17
60.54
-142.09
1
A
ALA
18
34.03
53.60
1
A
PRO
32
-68.17
98.25
1
A
PRO
52
-74.74
30.12
1
A
GLU
74
-52.99
99.43
2
A
SER
3
60.21
171.95
2
A
GLU
4
-179.12
117.26
2
A
MET
15
-68.97
77.66
2
A
CYS
17
78.08
175.54
2
A
ALA
18
65.77
63.97
3
A
LEU
2
-169.61
89.44
3
A
SER
3
-170.42
81.52
3
A
CYS
17
69.91
-49.39
3
A
ALA
18
-60.40
86.14
3
A
THR
57
-29.43
-48.73
4
A
ALA
18
63.31
82.24
4
A
PRO
32
-69.64
90.39
4
A
THR
35
-120.21
-53.61
5
A
CYS
17
53.74
-146.10
5
A
ALA
18
37.41
51.72
5
A
THR
35
-120.65
-53.78
5
A
THR
57
-28.76
-48.78
6
A
THR
16
49.12
29.55
6
A
ALA
18
84.14
79.52
6
A
GLU
44
35.23
55.85
6
A
PRO
52
-69.26
10.24
6
A
THR
57
-29.21
-51.40
7
A
LEU
2
-164.56
-49.03
7
A
CYS
17
49.89
-137.63
7
A
ALA
18
37.31
55.13
8
A
LEU
2
-108.58
-79.55
8
A
GLU
4
-170.20
139.00
8
A
CYS
17
58.47
-130.57
8
A
ALA
18
29.21
59.16
8
A
PRO
52
-67.27
9.73
8
A
THR
57
-29.17
-45.20
9
A
LEU
2
168.37
163.84
9
A
SER
3
63.65
92.20
9
A
CYS
17
71.20
-49.13
9
A
ALA
18
-57.83
81.32
9
A
PRO
52
-67.58
5.12
10
A
MET
15
38.71
70.09
10
A
CYS
17
54.86
-138.98
10
A
ALA
18
56.07
-83.13
10
A
ALA
19
-151.19
16.61
11
A
CYS
17
-138.98
-154.25
11
A
ALA
19
-154.79
38.47
11
A
PRO
52
-69.79
5.05
11
A
GLU
74
-60.12
71.16
12
A
CYS
17
-138.98
-154.25
12
A
ALA
19
-154.79
38.47
12
A
PRO
52
-69.79
5.05
12
A
GLU
74
-60.12
71.16
13
A
CYS
17
74.10
178.77
13
A
THR
35
-120.38
-63.05
13
A
PRO
52
-66.18
2.69
13
A
ILE
73
-112.53
79.52
14
A
CYS
17
52.16
-141.93
14
A
ALA
18
38.55
56.01
14
A
THR
57
-29.47
-50.04
15
A
LEU
2
-176.98
147.64
15
A
CYS
17
50.58
-137.62
15
A
ALA
18
54.95
-80.18
15
A
ALA
19
-151.01
13.57
15
A
PRO
32
-68.60
95.38
15
A
THR
35
-102.12
-61.79
15
A
PRO
52
-69.48
9.87
15
A
THR
57
-39.88
-38.31
16
A
THR
16
-142.52
39.39
16
A
CYS
17
56.03
-147.56
16
A
PRO
32
-69.48
94.48
16
A
THR
35
-121.77
-55.44
16
A
PRO
52
-67.95
7.72
16
A
THR
57
-29.29
-47.91
16
A
ILE
73
-106.21
72.69
17
A
LEU
2
29.86
76.19
17
A
MET
15
-46.11
104.05
17
A
CYS
17
55.68
-145.52
17
A
ALA
18
54.66
-80.83
17
A
ALA
19
-152.74
18.48
17
A
THR
35
-124.22
-56.39
17
A
PRO
52
-69.92
8.86
18
A
SER
3
75.64
130.89
18
A
CYS
17
58.46
-136.42
18
A
ALA
18
52.91
-81.19
18
A
ALA
19
-148.61
13.78
18
A
PRO
32
-68.06
91.88
18
A
THR
35
-105.07
-67.79
18
A
PRO
52
-70.79
20.98
19
A
LEU
2
45.29
73.65
19
A
CYS
17
148.17
-40.76
19
A
ALA
18
-67.40
-160.74
19
A
ALA
19
-73.62
39.26
19
A
PRO
32
-64.71
99.32
19
A
PRO
52
-68.80
10.35
20
A
CYS
17
58.68
-140.05
20
A
ALA
18
37.89
48.06
20
A
PRO
52
-76.83
30.13
21
A
LEU
2
75.25
70.81
21
A
ALA
18
77.79
74.02
21
A
PRO
52
-69.33
7.28
22
A
THR
16
-96.58
30.47
22
A
CYS
17
70.73
-159.99
22
A
ALA
18
47.02
-136.93
22
A
PRO
52
-68.63
7.60
22
A
THR
57
-29.61
-46.68
22
A
ILE
73
-118.71
74.66
23
A
THR
16
-79.53
45.37
23
A
CYS
17
47.27
-130.01
23
A
ALA
18
39.40
46.81
23
A
THR
57
-29.31
-43.09
23
A
GLU
74
-47.64
102.84
24
A
CYS
17
50.28
-140.80
24
A
ALA
18
36.17
57.77
24
A
ALA
19
59.66
16.72
24
A
PRO
32
-68.78
92.78
24
A
PRO
52
-69.93
8.40
25
A
SER
3
179.20
116.65
25
A
CYS
17
63.25
-150.15
25
A
PRO
52
-66.45
3.54
25
A
ILE
73
-110.34
66.39
26
A
MET
15
-108.31
-160.94
26
A
ALA
18
-159.37
-98.98
26
A
PRO
32
-67.95
99.43
26
A
PRO
52
-68.37
8.55
27
A
CYS
17
-121.43
-65.28
27
A
ALA
18
-158.97
80.04
27
A
THR
35
-122.33
-58.15
27
A
THR
43
-144.17
27.25
27
A
GLU
44
36.93
59.64
27
A
PRO
52
-73.93
23.00
28
A
SER
3
-171.97
78.24
28
A
CYS
17
57.92
-140.01
28
A
ALA
18
54.99
-82.25
28
A
ALA
19
-151.00
16.09
28
A
PRO
52
-68.46
6.73
28
A
THR
57
-29.28
-44.55
29
A
LEU
2
65.84
-174.86
29
A
SER
3
65.24
-165.22
29
A
GLU
4
68.93
133.70
29
A
CYS
17
79.10
-175.92
29
A
ALA
18
53.80
-146.18
29
A
PRO
32
-69.68
94.26
29
A
THR
35
-122.25
-56.37
30
A
LEU
2
176.77
-85.44
30
A
MET
15
28.08
82.52
30
A
CYS
17
62.15
-154.49
30
A
ALA
19
59.48
19.46
30
A
THR
35
-125.54
-57.36
30
A
ASN
40
-113.91
69.51
A core mutation affecting the folding properties of a soluble domain of the ATPase protein CopA from Bacillus subtilis
1
N
N
A
ALA
19
A
ALA
19
HELX_P
A
ARG
30
A
ARG
30
1
1
12
A
LEU
41
A
LEU
41
HELX_P
A
THR
43
A
THR
43
5
2
3
A
GLY
56
A
GLY
56
HELX_P
A
GLY
68
A
GLY
68
1
3
13
HYDROLASE
CopA;NMR;folding;P-type ATPase;mutation, Structural Proteomics in Europe, SPINE, Structural Genomics, HYDROLASE
COPA_BACSU
UNP
1
1
O32220
MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHVVTEKA
1
76
1OQ3
1
76
O32220
A
1
1
76
1
SER
engineered mutation
VAL
46
1OQ3
A
O32220
UNP
46
46
1
THR
cloning artifact
ILE
73
1OQ3
A
O32220
UNP
73
73
1
LYS
cloning artifact
GLY
75
1OQ3
A
O32220
UNP
75
75
1
ALA
cloning artifact
ARG
76
1OQ3
A
O32220
UNP
76
76
4
anti-parallel
anti-parallel
anti-parallel
A
VAL
34
A
VAL
34
A
ASN
40
A
ASN
40
A
THR
45
A
THR
45
A
TYR
50
A
TYR
50
A
LYS
6
A
LYS
6
A
SER
13
A
SER
13
A
HIS
70
A
HIS
70
A
VAL
71
A
VAL
71