0.009289
0.005363
0.000000
0.000000
0.010726
0.000000
0.000000
0.000000
0.003206
0.00000
0.00000
0.00000
Niwa, H.
Tonevitsky, A.G.
Agapov, I.I.
Saward, S.
Pfuller, U.
Palmer, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
107.650
107.650
311.920
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
R
C
N
90
S
C
N
91
R
C
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
R
C
N
275
R
C
N
276
R
C
N
277
S
C
N
278
R
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
IX
EUR.J.BIOCHEM.
EJBCAI
0262
0014-2956
270
2739
2749
10.1046/j.1432-1033.2003.03646.x
12823544
Crystal structure at 3 A of mistletoe lectin I, a dimeric type-II ribosome-inactivating protein, complexed with galactose
2003
NE
FEBS Lett.
FEBLAL
0165
0014-5793
431
367
370
10.1016/S0014-5793(98)00766-2
Mistletoe lectin I forms a double trefoil structure
1998
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
234
1279
1281
10.1006/jmbi.1993.1682
Crystallization of the ribosome inactivating protein ML1 from Viscum album (mistletoe) complexed with beta-D-galactose
1993
10.2210/pdb1oql/pdb
pdb_00001oql
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1998-06-12
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.488
1.0
PX7.2
SRS
1.488
SYNCHROTRON
SRS BEAMLINE PX7.2
27866.367
MISTLETOE LECTIN I
3.2.2.22
1
nat
polymer
28834.389
MISTLETOE LECTIN I
1
nat
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
non-polymer
180.156
beta-D-galactopyranose
2
man
non-polymer
18.015
water
47
nat
water
MLI A-chain, N-glycosidase
MLI B-chain, Galactose-specific lectin
no
no
YERLRLRVTHQTTGDEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNQGGDSITAAIDVTNLYVVAY
QAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILI
QMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASL
AIMLFVCGE
YERLRLRVTHQTTGDEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNQGGDSITAAIDVTNLYVVAY
QAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILI
QMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASL
AIMLFVCGE
A
polypeptide(L)
no
no
DDVTCSASEPTVRIVGRNGMCVDVRDDDFRDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFD
CNTAVREATLWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSV
WVETCVSSQKNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQAN
PKLRRIIIYPATGKPNQMWLPVP
DDVTCSASEPTVRIVGRNGMCVDVRDDDFRDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFD
CNTAVREATLWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSV
WVETCVSSQKNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQAN
PKLRRIIIYPATGKPNQMWLPVP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
European mistletoe
Viscum
sample
3972
Viscum album
European mistletoe
Viscum
sample
3972
Viscum album
1
4.51
72.52
VAPOR DIFFUSION, HANGING DROP
3.4
0.9M Ammonium sulphate, Glycine buffer, pH 3.4, 0.1M galactose, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2003-07-01
1
1
2008-04-29
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-10-25
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
E
NAG
290
n
C
NAG
1
E
NAG
291
n
C
NAG
2
F
NAG
300
n
D
NAG
1
F
NAG
301
n
D
NAG
2
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2003-03-10
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
GAL
beta-D-galactopyranose
HOH
water
2AAI
Ricin (PDB 2AAI)
PDB
experimental model
NAG
270
4
NAG
NAG
270
A
GAL
265
5
GAL
GAL
265
B
GAL
267
5
GAL
GAL
267
B
NAG
280
4
NAG
NAG
280
B
HOH
407
6
HOH
HOH
407
A
HOH
408
6
HOH
HOH
408
A
HOH
429
6
HOH
HOH
429
A
HOH
430
6
HOH
HOH
430
A
HOH
436
6
HOH
HOH
436
A
HOH
438
6
HOH
HOH
438
A
HOH
443
6
HOH
HOH
443
A
HOH
444
6
HOH
HOH
444
A
HOH
400
6
HOH
HOH
400
B
HOH
401
6
HOH
HOH
401
B
HOH
402
6
HOH
HOH
402
B
HOH
403
6
HOH
HOH
403
B
HOH
404
6
HOH
HOH
404
B
HOH
405
6
HOH
HOH
405
B
HOH
406
6
HOH
HOH
406
B
HOH
409
6
HOH
HOH
409
B
HOH
410
6
HOH
HOH
410
B
HOH
411
6
HOH
HOH
411
B
HOH
412
6
HOH
HOH
412
B
HOH
413
6
HOH
HOH
413
B
HOH
414
6
HOH
HOH
414
B
HOH
415
6
HOH
HOH
415
B
HOH
416
6
HOH
HOH
416
B
HOH
417
6
HOH
HOH
417
B
HOH
418
6
HOH
HOH
418
B
HOH
419
6
HOH
HOH
419
B
HOH
420
6
HOH
HOH
420
B
HOH
421
6
HOH
HOH
421
B
HOH
422
6
HOH
HOH
422
B
HOH
423
6
HOH
HOH
423
B
HOH
424
6
HOH
HOH
424
B
HOH
425
6
HOH
HOH
425
B
HOH
426
6
HOH
HOH
426
B
HOH
427
6
HOH
HOH
427
B
HOH
428
6
HOH
HOH
428
B
HOH
431
6
HOH
HOH
431
B
HOH
432
6
HOH
HOH
432
B
HOH
433
6
HOH
HOH
433
B
HOH
434
6
HOH
HOH
434
B
HOH
435
6
HOH
HOH
435
B
HOH
437
6
HOH
HOH
437
B
HOH
439
6
HOH
HOH
439
B
HOH
440
6
HOH
HOH
440
B
HOH
441
6
HOH
HOH
441
B
HOH
442
6
HOH
HOH
442
B
HOH
445
6
HOH
HOH
445
B
HOH
446
6
HOH
HOH
446
B
TYR
1
n
1
TYR
1
A
GLU
2
n
2
GLU
2
A
ARG
3
n
3
ARG
3
A
LEU
4
n
4
LEU
4
A
ARG
5
n
5
ARG
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
VAL
8
n
8
VAL
8
A
THR
9
n
9
THR
9
A
HIS
10
n
10
HIS
10
A
GLN
11
n
11
GLN
11
A
THR
12
n
12
THR
12
A
THR
13
n
13
THR
13
A
GLY
14
n
14
GLY
14
A
ASP
15
n
15
ASP
15
A
GLU
16
n
16
GLU
16
A
TYR
17
n
17
TYR
17
A
PHE
18
n
18
PHE
18
A
ARG
19
n
19
ARG
19
A
PHE
20
n
20
PHE
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
ASP
26
n
26
ASP
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
SER
29
n
29
SER
29
A
SER
30
n
30
SER
30
A
GLY
31
n
31
GLY
31
A
SER
32
n
32
SER
32
A
PHE
33
n
33
PHE
33
A
SER
34
n
34
SER
34
A
ASN
35
n
35
ASN
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
PRO
38
n
38
PRO
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
ARG
41
n
41
ARG
41
A
GLN
42
n
42
GLN
42
A
SER
43
n
43
SER
43
A
THR
44
n
44
THR
44
A
ILE
45
n
45
ILE
45
A
PRO
46
n
46
PRO
46
A
VAL
47
n
47
VAL
47
A
SER
48
n
48
SER
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
GLN
51
n
51
GLN
51
A
ARG
52
n
52
ARG
52
A
PHE
53
n
53
PHE
53
A
VAL
54
n
54
VAL
54
A
LEU
55
n
55
LEU
55
A
VAL
56
n
56
VAL
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
ASN
60
n
60
ASN
60
A
GLN
61
n
61
GLN
61
A
GLY
62
n
62
GLY
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
SER
65
n
65
SER
65
A
ILE
66
n
66
ILE
66
A
THR
67
n
67
THR
67
A
ALA
68
n
68
ALA
68
A
ALA
69
n
69
ALA
69
A
ILE
70
n
70
ILE
70
A
ASP
71
n
71
ASP
71
A
VAL
72
n
72
VAL
72
A
THR
73
n
73
THR
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
TYR
76
n
76
TYR
76
A
VAL
77
n
77
VAL
77
A
VAL
78
n
78
VAL
78
A
ALA
79
n
79
ALA
79
A
TYR
80
n
80
TYR
80
A
GLN
81
n
81
GLN
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
ASP
84
n
84
ASP
84
A
GLN
85
n
85
GLN
85
A
SER
86
n
86
SER
86
A
TYR
87
n
87
TYR
87
A
PHE
88
n
88
PHE
88
A
LEU
89
n
89
LEU
89
A
ARG
90
n
90
ARG
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
PRO
93
n
93
PRO
93
A
ARG
94
n
94
ARG
94
A
GLY
95
n
95
GLY
95
A
ALA
96
n
96
ALA
96
A
GLU
97
n
97
GLU
97
A
THR
98
n
98
THR
98
A
HIS
99
n
99
HIS
99
A
LEU
100
n
100
LEU
100
A
PHE
101
n
101
PHE
101
A
THR
102
n
102
THR
102
A
GLY
103
n
103
GLY
103
A
THR
104
n
104
THR
104
A
THR
105
n
105
THR
105
A
ARG
106
n
106
ARG
106
A
SER
107
n
107
SER
107
A
SER
108
n
108
SER
108
A
LEU
109
n
109
LEU
109
A
PRO
110
n
110
PRO
110
A
PHE
111
n
111
PHE
111
A
ASN
112
n
112
ASN
112
A
GLY
113
n
113
GLY
113
A
SER
114
n
114
SER
114
A
TYR
115
n
115
TYR
115
A
PRO
116
n
116
PRO
116
A
ASP
117
n
117
ASP
117
A
LEU
118
n
118
LEU
118
A
GLU
119
n
119
GLU
119
A
ARG
120
n
120
ARG
120
A
TYR
121
n
121
TYR
121
A
ALA
122
n
122
ALA
122
A
GLY
123
n
123
GLY
123
A
HIS
124
n
124
HIS
124
A
ARG
125
n
125
ARG
125
A
ASP
126
n
126
ASP
126
A
GLN
127
n
127
GLN
127
A
ILE
128
n
128
ILE
128
A
PRO
129
n
129
PRO
129
A
LEU
130
n
130
LEU
130
A
GLY
131
n
131
GLY
131
A
ILE
132
n
132
ILE
132
A
ASP
133
n
133
ASP
133
A
GLN
134
n
134
GLN
134
A
LEU
135
n
135
LEU
135
A
ILE
136
n
136
ILE
136
A
GLN
137
n
137
GLN
137
A
SER
138
n
138
SER
138
A
VAL
139
n
139
VAL
139
A
THR
140
n
140
THR
140
A
ALA
141
n
141
ALA
141
A
LEU
142
n
142
LEU
142
A
ARG
143
n
143
ARG
143
A
PHE
144
n
144
PHE
144
A
PRO
145
n
145
PRO
145
A
GLY
146
n
146
GLY
146
A
GLY
147
n
147
GLY
147
A
SER
148
n
148
SER
148
A
THR
149
n
149
THR
149
A
ARG
150
n
150
ARG
150
A
THR
151
n
151
THR
151
A
GLN
152
n
152
GLN
152
A
ALA
153
n
153
ALA
153
A
ARG
154
n
154
ARG
154
A
SER
155
n
155
SER
155
A
ILE
156
n
156
ILE
156
A
LEU
157
n
157
LEU
157
A
ILE
158
n
158
ILE
158
A
LEU
159
n
159
LEU
159
A
ILE
160
n
160
ILE
160
A
GLN
161
n
161
GLN
161
A
MET
162
n
162
MET
162
A
ILE
163
n
163
ILE
163
A
SER
164
n
164
SER
164
A
GLU
165
n
165
GLU
165
A
ALA
166
n
166
ALA
166
A
ALA
167
n
167
ALA
167
A
ARG
168
n
168
ARG
168
A
PHE
169
n
169
PHE
169
A
ASN
170
n
170
ASN
170
A
PRO
171
n
171
PRO
171
A
ILE
172
n
172
ILE
172
A
LEU
173
n
173
LEU
173
A
TRP
174
n
174
TRP
174
A
ARG
175
n
175
ARG
175
A
ALA
176
n
176
ALA
176
A
ARG
177
n
177
ARG
177
A
GLN
178
n
178
GLN
178
A
TYR
179
n
179
TYR
179
A
ILE
180
n
180
ILE
180
A
ASN
181
n
181
ASN
181
A
SER
182
n
182
SER
182
A
GLY
183
n
183
GLY
183
A
ALA
184
n
184
ALA
184
A
SER
185
n
185
SER
185
A
PHE
186
n
186
PHE
186
A
LEU
187
n
187
LEU
187
A
PRO
188
n
188
PRO
188
A
ASP
189
n
189
ASP
189
A
VAL
190
n
190
VAL
190
A
TYR
191
n
191
TYR
191
A
MET
192
n
192
MET
192
A
LEU
193
n
193
LEU
193
A
GLU
194
n
194
GLU
194
A
LEU
195
n
195
LEU
195
A
GLU
196
n
196
GLU
196
A
THR
197
n
197
THR
197
A
SER
198
n
198
SER
198
A
TRP
199
n
199
TRP
199
A
GLY
200
n
200
GLY
200
A
GLN
201
n
201
GLN
201
A
GLN
202
n
202
GLN
202
A
SER
203
n
203
SER
203
A
THR
204
n
204
THR
204
A
GLN
205
n
205
GLN
205
A
VAL
206
n
206
VAL
206
A
GLN
207
n
207
GLN
207
A
HIS
208
n
208
HIS
208
A
SER
209
n
209
SER
209
A
THR
210
n
210
THR
210
A
ASP
211
n
211
ASP
211
A
GLY
212
n
212
GLY
212
A
VAL
213
n
213
VAL
213
A
PHE
214
n
214
PHE
214
A
ASN
215
n
215
ASN
215
A
ASN
216
n
216
ASN
216
A
PRO
217
n
217
PRO
217
A
ILE
218
n
218
ILE
218
A
ARG
219
n
219
ARG
219
A
LEU
220
n
220
LEU
220
A
ALA
221
n
221
ALA
221
A
ILE
222
n
222
ILE
222
A
PRO
223
n
223
PRO
223
A
PRO
224
n
224
PRO
224
A
GLY
225
n
225
GLY
225
A
ASN
226
n
226
ASN
226
A
PHE
227
n
227
PHE
227
A
VAL
228
n
228
VAL
228
A
THR
229
n
229
THR
229
A
LEU
230
n
230
LEU
230
A
THR
231
n
231
THR
231
A
ASN
232
n
232
ASN
232
A
VAL
233
n
233
VAL
233
A
ARG
234
n
234
ARG
234
A
ASP
235
n
235
ASP
235
A
VAL
236
n
236
VAL
236
A
ILE
237
n
237
ILE
237
A
ALA
238
n
238
ALA
238
A
SER
239
n
239
SER
239
A
LEU
240
n
240
LEU
240
A
ALA
241
n
241
ALA
241
A
ILE
242
n
242
ILE
242
A
MET
243
n
243
MET
243
A
LEU
244
n
244
LEU
244
A
PHE
245
n
245
PHE
245
A
VAL
246
n
246
VAL
246
A
CYS
247
n
247
CYS
247
A
GLY
248
n
248
GLY
248
A
n
249
249
A
ASP
1
n
1
ASP
1
B
ASP
2
n
2
ASP
2
B
VAL
3
n
3
VAL
3
B
THR
4
n
4
THR
4
B
CYS
5
n
5
CYS
5
B
SER
6
n
6
SER
6
B
ALA
7
n
7
ALA
7
B
SER
8
n
8
SER
8
B
GLU
9
n
9
GLU
9
B
PRO
10
n
10
PRO
10
B
THR
11
n
11
THR
11
B
VAL
12
n
12
VAL
12
B
ARG
13
n
13
ARG
13
B
ILE
14
n
14
ILE
14
B
VAL
15
n
15
VAL
15
B
GLY
16
n
16
GLY
16
B
ARG
17
n
17
ARG
17
B
ASN
18
n
18
ASN
18
B
GLY
19
n
19
GLY
19
B
MET
20
n
20
MET
20
B
CYS
21
n
21
CYS
21
B
VAL
22
n
22
VAL
22
B
ASP
23
n
23
ASP
23
B
VAL
24
n
24
VAL
24
B
ARG
25
n
25
ARG
25
B
ASP
26
n
26
ASP
26
B
ASP
27
n
27
ASP
27
B
ASP
28
n
28
ASP
28
B
PHE
29
n
29
PHE
29
B
ARG
30
n
30
ARG
30
B
ASP
31
n
31
ASP
31
B
GLY
32
n
32
GLY
32
B
ASN
33
n
33
ASN
33
B
GLN
34
n
34
GLN
34
B
ILE
35
n
35
ILE
35
B
GLN
36
n
36
GLN
36
B
LEU
37
n
37
LEU
37
B
TRP
38
n
38
TRP
38
B
PRO
39
n
39
PRO
39
B
SER
40
n
40
SER
40
B
LYS
41
n
41
LYS
41
B
SER
42
n
42
SER
42
B
ASN
43
n
43
ASN
43
B
ASN
44
n
44
ASN
44
B
ASP
45
n
45
ASP
45
B
PRO
46
n
46
PRO
46
B
ASN
47
n
47
ASN
47
B
GLN
48
n
48
GLN
48
B
LEU
49
n
49
LEU
49
B
TRP
50
n
50
TRP
50
B
THR
51
n
51
THR
51
B
ILE
52
n
52
ILE
52
B
LYS
53
n
53
LYS
53
B
ARG
54
n
54
ARG
54
B
ASP
55
n
55
ASP
55
B
GLY
56
n
56
GLY
56
B
THR
57
n
57
THR
57
B
ILE
58
n
58
ILE
58
B
ARG
59
n
59
ARG
59
B
SER
60
n
60
SER
60
B
ASN
61
n
61
ASN
61
B
GLY
62
n
62
GLY
62
B
SER
63
n
63
SER
63
B
CYS
64
n
64
CYS
64
B
LEU
65
n
65
LEU
65
B
THR
66
n
66
THR
66
B
THR
67
n
67
THR
67
B
TYR
68
n
68
TYR
68
B
GLY
69
n
69
GLY
69
B
TYR
70
n
70
TYR
70
B
THR
71
n
71
THR
71
B
ALA
72
n
72
ALA
72
B
GLY
73
n
73
GLY
73
B
VAL
74
n
74
VAL
74
B
TYR
75
n
75
TYR
75
B
VAL
76
n
76
VAL
76
B
MET
77
n
77
MET
77
B
ILE
78
n
78
ILE
78
B
PHE
79
n
79
PHE
79
B
ASP
80
n
80
ASP
80
B
CYS
81
n
81
CYS
81
B
ASN
82
n
82
ASN
82
B
THR
83
n
83
THR
83
B
ALA
84
n
84
ALA
84
B
VAL
85
n
85
VAL
85
B
ARG
86
n
86
ARG
86
B
GLU
87
n
87
GLU
87
B
ALA
88
n
88
ALA
88
B
THR
89
n
89
THR
89
B
LEU
90
n
90
LEU
90
B
TRP
91
n
91
TRP
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
TRP
94
n
94
TRP
94
B
GLY
95
n
95
GLY
95
B
ASN
96
n
96
ASN
96
B
GLY
97
n
97
GLY
97
B
THR
98
n
98
THR
98
B
ILE
99
n
99
ILE
99
B
ILE
100
n
100
ILE
100
B
ASN
101
n
101
ASN
101
B
PRO
102
n
102
PRO
102
B
ARG
103
n
103
ARG
103
B
SER
104
n
104
SER
104
B
ASN
105
n
105
ASN
105
B
LEU
106
n
106
LEU
106
B
VAL
107
n
107
VAL
107
B
LEU
108
n
108
LEU
108
B
ALA
109
n
109
ALA
109
B
ALA
110
n
110
ALA
110
B
SER
111
n
111
SER
111
B
SER
112
n
112
SER
112
B
GLY
113
n
113
GLY
113
B
ILE
114
n
114
ILE
114
B
LYS
115
n
115
LYS
115
B
GLY
116
n
116
GLY
116
B
THR
117
n
117
THR
117
B
THR
118
n
118
THR
118
B
LEU
119
n
119
LEU
119
B
THR
120
n
120
THR
120
B
VAL
121
n
121
VAL
121
B
GLN
122
n
122
GLN
122
B
THR
123
n
123
THR
123
B
LEU
124
n
124
LEU
124
B
ASP
125
n
125
ASP
125
B
TYR
126
n
126
TYR
126
B
THR
127
n
127
THR
127
B
LEU
128
n
128
LEU
128
B
GLY
129
n
129
GLY
129
B
GLN
130
n
130
GLN
130
B
GLY
131
n
131
GLY
131
B
TRP
132
n
132
TRP
132
B
LEU
133
n
133
LEU
133
B
ALA
134
n
134
ALA
134
B
GLY
135
n
135
GLY
135
B
ASN
136
n
136
ASN
136
B
ASP
137
n
137
ASP
137
B
THR
138
n
138
THR
138
B
ALA
139
n
139
ALA
139
B
PRO
140
n
140
PRO
140
B
ARG
141
n
141
ARG
141
B
GLU
142
n
142
GLU
142
B
VAL
143
n
143
VAL
143
B
THR
144
n
144
THR
144
B
ILE
145
n
145
ILE
145
B
TYR
146
n
146
TYR
146
B
GLY
147
n
147
GLY
147
B
PHE
148
n
148
PHE
148
B
ARG
149
n
149
ARG
149
B
ASP
150
n
150
ASP
150
B
LEU
151
n
151
LEU
151
B
CYS
152
n
152
CYS
152
B
MET
153
n
153
MET
153
B
GLU
154
n
154
GLU
154
B
SER
155
n
155
SER
155
B
ASN
156
n
156
ASN
156
B
GLY
157
n
157
GLY
157
B
GLY
158
n
158
GLY
158
B
SER
159
n
159
SER
159
B
VAL
160
n
160
VAL
160
B
TRP
161
n
161
TRP
161
B
VAL
162
n
162
VAL
162
B
GLU
163
n
163
GLU
163
B
THR
164
n
164
THR
164
B
CYS
165
n
165
CYS
165
B
VAL
166
n
166
VAL
166
B
SER
167
n
167
SER
167
B
SER
168
n
168
SER
168
B
GLN
169
n
169
GLN
169
B
LYS
170
n
170
LYS
170
B
ASN
171
n
171
ASN
171
B
GLN
172
n
172
GLN
172
B
ARG
173
n
173
ARG
173
B
TRP
174
n
174
TRP
174
B
ALA
175
n
175
ALA
175
B
LEU
176
n
176
LEU
176
B
TYR
177
n
177
TYR
177
B
GLY
178
n
178
GLY
178
B
ASP
179
n
179
ASP
179
B
GLY
180
n
180
GLY
180
B
SER
181
n
181
SER
181
B
ILE
182
n
182
ILE
182
B
ARG
183
n
183
ARG
183
B
PRO
184
n
184
PRO
184
B
LYS
185
n
185
LYS
185
B
GLN
186
n
186
GLN
186
B
ASN
187
n
187
ASN
187
B
GLN
188
n
188
GLN
188
B
ASP
189
n
189
ASP
189
B
GLN
190
n
190
GLN
190
B
CYS
191
n
191
CYS
191
B
LEU
192
n
192
LEU
192
B
THR
193
n
193
THR
193
B
CYS
194
n
194
CYS
194
B
GLY
195
n
195
GLY
195
B
ARG
196
n
196
ARG
196
B
ASP
197
n
197
ASP
197
B
SER
198
n
198
SER
198
B
VAL
199
n
199
VAL
199
B
SER
200
n
200
SER
200
B
THR
201
n
201
THR
201
B
VAL
202
n
202
VAL
202
B
ILE
203
n
203
ILE
203
B
ASN
204
n
204
ASN
204
B
ILE
205
n
205
ILE
205
B
VAL
206
n
206
VAL
206
B
SER
207
n
207
SER
207
B
CYS
208
n
208
CYS
208
B
SER
209
n
209
SER
209
B
ALA
210
n
210
ALA
210
B
GLY
211
n
211
GLY
211
B
SER
212
n
212
SER
212
B
SER
213
n
213
SER
213
B
GLY
214
n
214
GLY
214
B
GLN
215
n
215
GLN
215
B
ARG
216
n
216
ARG
216
B
TRP
217
n
217
TRP
217
B
VAL
218
n
218
VAL
218
B
PHE
219
n
219
PHE
219
B
THR
220
n
220
THR
220
B
ASN
221
n
221
ASN
221
B
GLU
222
n
222
GLU
222
B
GLY
223
n
223
GLY
223
B
ALA
224
n
224
ALA
224
B
ILE
225
n
225
ILE
225
B
LEU
226
n
226
LEU
226
B
ASN
227
n
227
ASN
227
B
LEU
228
n
228
LEU
228
B
LYS
229
n
229
LYS
229
B
ASN
230
n
230
ASN
230
B
GLY
231
n
231
GLY
231
B
LEU
232
n
232
LEU
232
B
ALA
233
n
233
ALA
233
B
MET
234
n
234
MET
234
B
ASP
235
n
235
ASP
235
B
VAL
236
n
236
VAL
236
B
ALA
237
n
237
ALA
237
B
GLN
238
n
238
GLN
238
B
ALA
239
n
239
ALA
239
B
ASN
240
n
240
ASN
240
B
PRO
241
n
241
PRO
241
B
LYS
242
n
242
LYS
242
B
LEU
243
n
243
LEU
243
B
ARG
244
n
244
ARG
244
B
ARG
245
n
245
ARG
245
B
ILE
246
n
246
ILE
246
B
ILE
247
n
247
ILE
247
B
ILE
248
n
248
ILE
248
B
TYR
249
n
249
TYR
249
B
PRO
250
n
250
PRO
250
B
ALA
251
n
251
ALA
251
B
THR
252
n
252
THR
252
B
GLY
253
n
253
GLY
253
B
LYS
254
n
254
LYS
254
B
PRO
255
n
255
PRO
255
B
ASN
256
n
256
ASN
256
B
GLN
257
n
257
GLN
257
B
MET
258
n
258
MET
258
B
TRP
259
n
259
TRP
259
B
LEU
260
n
260
LEU
260
B
PRO
261
n
261
PRO
261
B
VAL
262
n
262
VAL
262
B
PRO
263
n
263
PRO
263
B
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA,PQS
2
dimeric
4970
8
21000
A
ASN
112
GLYCOSYLATION SITE
A
ASN
112
ASN
B
ASN
61
GLYCOSYLATION SITE
B
ASN
61
ASN
B
ASN
96
GLYCOSYLATION SITE
B
ASN
96
ASN
B
ASN
136
GLYCOSYLATION SITE
B
ASN
136
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_564
x,x-y+1,-z-1/6
crystal symmetry operation
-53.8250000000
93.2276347174
-51.9866666667
A
N
LEU
4
A
N
LEU
4
A
O
LEU
55
A
O
LEU
55
A
N
VAL
56
A
N
VAL
56
A
O
ALA
68
A
O
ALA
68
A
N
ALA
69
A
N
ALA
69
A
O
ALA
79
A
O
ALA
79
A
N
TYR
80
A
N
TYR
80
A
O
TYR
87
A
O
TYR
87
A
N
PHE
88
A
N
PHE
88
A
O
LEU
109
A
O
LEU
109
A
N
SER
34
A
N
SER
34
A
O
ILE
37
A
O
ILE
37
A
N
ILE
218
A
N
ILE
218
A
O
LEU
230
A
O
LEU
230
B
N
VAL
12
B
N
VAL
12
B
O
TRP
50
B
O
TRP
50
B
N
THR
51
B
N
THR
51
B
O
ARG
59
B
O
ARG
59
B
N
SER
60
B
N
SER
60
B
O
SER
63
B
O
SER
63
B
N
THR
66
B
N
THR
66
B
O
MET
77
B
O
MET
77
B
N
VAL
15
B
N
VAL
15
B
O
LEU
133
B
O
LEU
133
B
N
ASP
23
B
N
ASP
23
B
O
GLN
36
B
O
GLN
36
B
N
GLN
92
B
N
GLN
92
B
O
ILE
100
B
O
ILE
100
B
N
ASN
101
B
N
ASN
101
B
O
LEU
106
B
O
LEU
106
B
N
VAL
107
B
N
VAL
107
B
O
GLN
122
B
O
GLN
122
B
O
ARG
183
B
O
ARG
183
B
N
ALA
175
B
N
ALA
175
B
O
LEU
176
B
O
LEU
176
B
N
ARG
141
B
N
ARG
141
B
N
TYR
146
B
N
TYR
146
B
O
LEU
260
B
O
LEU
260
B
N
GLU
154
B
N
GLU
154
B
O
TRP
161
B
O
TRP
161
B
N
CYS
191
B
N
CYS
191
B
O
VAL
206
B
O
VAL
206
B
N
VAL
218
B
N
VAL
218
B
O
LEU
226
B
O
LEU
226
B
N
ASP
235
B
N
ASP
235
B
O
ILE
247
B
O
ILE
247
1
A
GLU
249
A
GLU
249
1
Y
1
A
GLU
36
88.98
-5.41
1
A
ASP
49
-29.45
133.04
1
A
GLN
51
-141.59
23.92
1
A
PHE
101
52.34
71.25
1
A
ILE
163
-112.12
-76.47
1
A
PRO
224
-64.98
25.56
1
B
ASP
2
21.94
95.19
1
B
CYS
5
-143.83
38.48
1
B
ALA
7
-161.28
-29.17
1
B
ARG
17
-38.17
131.93
1
B
ASN
156
-105.77
66.65
1
B
ASP
179
-67.12
4.59
1
B
ALA
237
-33.66
116.52
PROTEIN.PARAM
PROTEIN.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
WATER.PARAM
WATER.TOP
40.8
7.16
12.89
0.00
7.16
0.00
-14.31
OXT was included for the A-chain in the refinement, but removed on deposition.
0.24
0.007
0.199
0.201
0.201
3.0
40.2
1117
21899
21899
5.1
98.0
RANDOM
2326178.74
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Ricin (PDB 2AAI)
Engh & Huber
FLAT MODEL
10
0.314132
0.42
0.34
40.2
0.36
0.26
3.0
40.2
47
4131
108
0
3976
0.011
1.7
26.0
1.46
1.14
1.50
2.03
2.00
1.54
2.00
2.58
2.50
0.303
0.028
0.284
3.11
117
1937
2054
10
5.7
95.3
2.9
40.2
1OQL
24175
24175
0.0
0.0
0.069
1
8.8
2.8
98.0
refinement
CNS
1.1
data reduction
DENZO
data scaling
CCP4
(SCALA)
phasing
AMoRE
Mistletoe Lectin I from Viscum album complexed with galactose
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
4
N
N
6
N
N
6
N
N
A
THR
13
A
THR
13
HELX_P
A
VAL
28
A
VAL
28
1
1
16
A
GLY
95
A
GLY
95
HELX_P
A
LEU
100
A
LEU
100
1
2
6
A
SER
114
A
SER
114
HELX_P
A
GLY
123
A
GLY
123
1
3
10
A
HIS
124
A
HIS
124
HELX_P
A
ILE
128
A
ILE
128
5
4
5
A
GLY
131
A
GLY
131
HELX_P
A
PHE
144
A
PHE
144
1
5
14
A
SER
148
A
SER
148
HELX_P
A
ILE
163
A
ILE
163
1
6
16
A
ILE
163
A
ILE
163
HELX_P
A
PHE
169
A
PHE
169
1
7
7
A
PHE
169
A
PHE
169
HELX_P
A
GLY
183
A
GLY
183
1
8
15
A
ASP
189
A
ASP
189
HELX_P
A
SER
209
A
SER
209
1
9
21
A
ARG
234
A
ARG
234
HELX_P
A
VAL
236
A
VAL
236
5
10
3
B
GLY
16
B
GLY
16
HELX_P
B
MET
20
B
MET
20
5
11
5
B
ASP
26
B
ASP
26
HELX_P
B
ASP
28
B
ASP
28
5
12
3
B
ASP
45
B
ASP
45
HELX_P
B
LEU
49
B
LEU
49
5
13
5
B
VAL
85
B
VAL
85
HELX_P
B
LEU
90
B
LEU
90
5
14
6
B
THR
127
B
THR
127
HELX_P
B
GLY
131
B
GLY
131
5
15
5
B
GLY
147
B
GLY
147
HELX_P
B
LEU
151
B
LEU
151
5
16
5
B
GLN
169
B
GLN
169
HELX_P
B
GLN
172
B
GLN
172
5
17
4
B
SER
212
B
SER
212
HELX_P
B
GLN
215
B
GLN
215
5
18
4
B
GLN
238
B
GLN
238
HELX_P
B
ARG
244
B
ARG
244
5
19
7
B
LYS
254
B
LYS
254
HELX_P
B
MET
258
B
MET
258
5
20
5
disulf
2.045
A
CYS
247
A
SG
CYS
247
1_555
B
CYS
5
B
SG
CYS
5
1_555
disulf
2.046
B
CYS
64
B
SG
CYS
64
1_555
B
CYS
81
B
SG
CYS
81
1_555
disulf
2.051
B
CYS
152
B
SG
CYS
152
1_555
B
CYS
165
B
SG
CYS
165
1_555
disulf
2.039
B
CYS
191
B
SG
CYS
191
1_555
B
CYS
208
B
SG
CYS
208
1_555
covale
1.460
one
N-Glycosylation
A
ASN
112
A
ND2
ASN
112
1_555
A
NAG
270
E
C1
NAG
1_555
covale
1.454
one
N-Glycosylation
B
ASN
61
B
ND2
ASN
61
1_555
B
NAG
280
H
C1
NAG
1_555
covale
1.456
one
N-Glycosylation
B
ASN
96
B
ND2
ASN
96
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.449
one
N-Glycosylation
B
ASN
136
B
ND2
ASN
136
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.387
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.384
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
HYDROLASE/SUGAR BINDING PROTEIN
Type-II ribosome-inactivating protein, ricin-like, beta-trefoil, HYDROLASE-SUGAR BINDING PROTEIN COMPLEX
CAA03513
GB
1
34
3714429
YERLRLRVTHQTTGDEYFRFITLLRDYVSSGSFSNEIPLLRQSTIPVSDAQRFVLVELTNQGGDSITAAIDVTNLYVVAY
QAGDQSYFLRDAPRGAETHLFTGTTRSSLPFNGSYPDLERYAGHRDQIPLGIDQLIQSVTALRFPGGSTRTQARSILILI
QMISEAARFNPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGVFNNPIRLAIPPGNFVTLTNVRDVIASL
AIMLFVCGE
CAA03513
GB
2
302
3714429
DDVTCSASEPTVRIVGRNGMCVDVRDDDFRDGNQIQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLTTYGYTAGVYVMIFD
CNTAVREATLWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPREVTIYGFRDLCMESNGGSV
WVETCVSSQKNQRWALYGDGSIRPKQNQDQCLTCGRDSVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQAN
PKLRRIIIYPATGKPNQMWLPVP
34
282
1OQL
1
249
3714429
A
1
1
249
302
564
1OQL
1
263
3714429
B
2
1
263
6
2
2
5
2
2
4
4
2
2
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
2
A
GLU
2
A
VAL
8
A
VAL
8
A
PHE
53
A
PHE
53
A
ASN
60
A
ASN
60
A
SER
65
A
SER
65
A
ASP
71
A
ASP
71
A
VAL
77
A
VAL
77
A
ALA
82
A
ALA
82
A
GLN
85
A
GLN
85
A
ARG
90
A
ARG
90
A
SER
108
A
SER
108
A
ASN
112
A
ASN
112
A
SER
29
A
SER
29
A
SER
34
A
SER
34
A
ILE
37
A
ILE
37
A
LEU
40
A
LEU
40
A
VAL
213
A
VAL
213
A
ILE
222
A
ILE
222
A
ASN
226
A
ASN
226
A
ASN
232
A
ASN
232
B
THR
11
B
THR
11
B
VAL
12
B
VAL
12
B
TRP
50
B
TRP
50
B
ILE
52
B
ILE
52
B
ILE
58
B
ILE
58
B
SER
60
B
SER
60
B
SER
63
B
SER
63
B
THR
67
B
THR
67
B
VAL
76
B
VAL
76
B
PHE
79
B
PHE
79
B
ILE
14
B
ILE
14
B
VAL
15
B
VAL
15
B
LEU
133
B
LEU
133
B
ALA
134
B
ALA
134
B
CYS
21
B
CYS
21
B
VAL
24
B
VAL
24
B
ILE
35
B
ILE
35
B
TRP
38
B
TRP
38
B
GLN
92
B
GLN
92
B
ILE
93
B
ILE
93
B
ILE
99
B
ILE
99
B
ASN
101
B
ASN
101
B
LEU
106
B
LEU
106
B
ALA
109
B
ALA
109
B
THR
120
B
THR
120
B
GLN
122
B
GLN
122
B
ILE
182
B
ILE
182
B
PRO
184
B
PRO
184
B
TRP
174
B
TRP
174
B
LEU
176
B
LEU
176
B
ARG
141
B
ARG
141
B
TYR
146
B
TYR
146
B
LEU
260
B
LEU
260
B
VAL
262
B
VAL
262
B
CYS
152
B
CYS
152
B
ASN
156
B
ASN
156
B
SER
159
B
SER
159
B
GLU
163
B
GLU
163
B
GLN
190
B
GLN
190
B
THR
193
B
THR
193
B
ASN
204
B
ASN
204
B
SER
207
B
SER
207
B
TRP
217
B
TRP
217
B
PHE
219
B
PHE
219
B
ILE
225
B
ILE
225
B
ASN
227
B
ASN
227
B
ALA
233
B
ALA
233
B
VAL
236
B
VAL
236
B
ILE
246
B
ILE
246
B
TYR
249
B
TYR
249
179
P 65 2 2