0.008693 0.000000 0.000000 0.000000 0.006896 0.000000 0.000000 0.000000 0.025281 0.00000 0.00000 0.00000 Bell, J.K. Goetz, D.H. Mahrus, S. Harris, J.L. Fletterick, R.J. Craik, C.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 115.034 145.022 39.555 C21 H34 Cl N6 O3 1 453.986 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide PPACK peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 R C N 3 N C N 4 N O N 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C N 12 N N N 13 S C N 14 N C N 15 N O N 16 N C N 17 N C N 18 N C N 19 N N N 20 S C N 21 S C N 22 N O N 23 N C N 24 N C N 25 N C N 26 N N N 27 N C N 28 N N N 29 N N N 30 N C N 31 N CL N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N N N 67 S C N 68 N C N 69 N O N 70 N C N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N C N 86 N N N 87 N C N 88 N N N 89 N N N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N O N 113 N N N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N O N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N N N 140 R C N 141 N C N 142 N O N 143 N C N 144 N S N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N O N 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N O N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 N C N 194 N C N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C Y 207 N C Y 208 N N Y 209 N C Y 210 N C Y 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N O N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 S C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N C N 278 N N N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N S N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N S N 370 N O N 371 N O N 372 N O N 373 N O N 374 N N N 375 S C N 376 N C N 377 N O N 378 R C N 379 N O N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N N Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N N N 443 S C N 444 N C N 445 N O N 446 N C N 447 N C N 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing Y 12 N doub Y 13 N sing Y 14 N sing N 15 N sing Y 16 N doub N 17 N sing Y 18 N doub N 19 N sing Y 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing Y 206 N sing Y 207 N doub Y 208 N doub N 209 N sing Y 210 N sing N 211 N sing Y 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N doub Y 315 N sing Y 316 N sing N 317 N sing Y 318 N doub N 319 N sing Y 320 N doub N 321 N sing Y 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing Y 387 N doub Y 388 N sing Y 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N sing Y 396 N doub N 397 N sing Y 398 N doub N 399 N sing Y 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N doub N 411 N sing N 412 N sing N 413 N sing N 414 N sing Y 415 N doub Y 416 N sing Y 417 N sing N 418 N sing Y 419 N doub N 420 N sing Y 421 N doub N 422 N sing Y 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 10 527 534 10.1038/nsb944 12819769 The oligomeric structure of human granzyme A is a determinant of its extended substrate specificity. 2003 10.2210/pdb1orf/pdb pdb_00001orf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-06-02 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1 1.0 5.0.3 ALS 1 SYNCHROTRON ALS BEAMLINE 5.0.3 25870.066 Granzyme A 3.4.21.78 N170E 1 man polymer solid phase peptide synthesis 453.986 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 128 nat water Cytotoxic T-lymphocyte proteinase 1, Hanukkah factor, H factor, HF, Granzyme 1, CTL tryptase, Fragmentin 1 no no IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFN PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFN PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample GZMA 9606 Homo sapiens 4922 Pichia pastoris X33 plasmid pPicZalphaA 1 3.14 60.78 VAPOR DIFFUSION, HANGING DROP 8.5 Tris pH 8.5, PEG 4000, lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model entity pdbx_entity_src_syn repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Data collection Refinement description Source and taxonomy Structure summary 1 0 2003-07-01 1 1 2008-04-29 1 2 2011-07-13 1 3 2013-02-27 1 4 2021-10-27 1 5 2023-08-16 1 6 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _entity.details RCSB Y RCSB 2003-03-12 REL 0G6 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide SO4 SULFATE ION HOH water THE INHIBITOR IS COVALENTLY CONNECTED TO ACTIVE_SITE RESIDUES: 1) VIA A HEMIKETAL GROUP TO OG SER A 195, 2) VIA A METHYLENE GROUP TO NE2 HIS A 57. 1DST PDB experimental model Inhibitor D-Phe-Pro-Arg-CH2Cl Peptide-like DPN 1 2 0G6 0G6 1 A SO4 1 3 SO4 SO4 247 A HOH 3 4 HOH HOH 248 A HOH 4 4 HOH HOH 249 A HOH 5 4 HOH HOH 250 A HOH 6 4 HOH HOH 251 A HOH 7 4 HOH HOH 252 A HOH 8 4 HOH HOH 253 A HOH 9 4 HOH HOH 254 A HOH 10 4 HOH HOH 255 A HOH 11 4 HOH HOH 256 A HOH 12 4 HOH HOH 257 A HOH 13 4 HOH HOH 258 A HOH 14 4 HOH HOH 259 A HOH 15 4 HOH HOH 260 A HOH 16 4 HOH HOH 261 A HOH 17 4 HOH HOH 262 A HOH 18 4 HOH HOH 263 A HOH 19 4 HOH HOH 264 A HOH 20 4 HOH HOH 265 A HOH 21 4 HOH HOH 266 A HOH 22 4 HOH HOH 267 A HOH 23 4 HOH HOH 268 A HOH 25 4 HOH HOH 269 A HOH 26 4 HOH HOH 270 A HOH 27 4 HOH HOH 271 A HOH 28 4 HOH HOH 272 A HOH 29 4 HOH HOH 273 A HOH 30 4 HOH HOH 274 A HOH 31 4 HOH HOH 275 A HOH 32 4 HOH HOH 276 A HOH 33 4 HOH HOH 277 A HOH 34 4 HOH HOH 278 A HOH 35 4 HOH HOH 279 A HOH 36 4 HOH HOH 280 A HOH 37 4 HOH HOH 281 A HOH 38 4 HOH HOH 282 A HOH 39 4 HOH HOH 283 A HOH 40 4 HOH HOH 284 A HOH 41 4 HOH HOH 285 A HOH 42 4 HOH HOH 286 A HOH 43 4 HOH HOH 287 A HOH 44 4 HOH HOH 288 A HOH 45 4 HOH HOH 289 A HOH 46 4 HOH HOH 290 A HOH 47 4 HOH HOH 291 A HOH 48 4 HOH HOH 292 A HOH 49 4 HOH HOH 293 A HOH 50 4 HOH HOH 294 A HOH 51 4 HOH HOH 295 A HOH 52 4 HOH HOH 296 A HOH 54 4 HOH HOH 297 A HOH 55 4 HOH HOH 298 A HOH 56 4 HOH HOH 299 A HOH 57 4 HOH HOH 300 A HOH 58 4 HOH HOH 301 A HOH 59 4 HOH HOH 302 A HOH 60 4 HOH HOH 303 A HOH 61 4 HOH HOH 304 A HOH 62 4 HOH HOH 305 A HOH 64 4 HOH HOH 306 A HOH 65 4 HOH HOH 307 A HOH 66 4 HOH HOH 308 A HOH 67 4 HOH HOH 309 A HOH 68 4 HOH HOH 310 A HOH 69 4 HOH HOH 311 A HOH 70 4 HOH HOH 312 A HOH 71 4 HOH HOH 313 A HOH 72 4 HOH HOH 314 A HOH 73 4 HOH HOH 315 A HOH 74 4 HOH HOH 316 A HOH 75 4 HOH HOH 317 A HOH 76 4 HOH HOH 318 A HOH 77 4 HOH HOH 319 A HOH 78 4 HOH HOH 320 A HOH 79 4 HOH HOH 321 A HOH 80 4 HOH HOH 322 A HOH 81 4 HOH HOH 323 A HOH 82 4 HOH HOH 324 A HOH 83 4 HOH HOH 325 A HOH 84 4 HOH HOH 326 A HOH 85 4 HOH HOH 327 A HOH 86 4 HOH HOH 328 A HOH 87 4 HOH HOH 329 A HOH 88 4 HOH HOH 330 A HOH 89 4 HOH HOH 331 A HOH 90 4 HOH HOH 332 A HOH 91 4 HOH HOH 333 A HOH 92 4 HOH HOH 334 A HOH 93 4 HOH HOH 335 A HOH 94 4 HOH HOH 336 A HOH 95 4 HOH HOH 337 A HOH 96 4 HOH HOH 338 A HOH 97 4 HOH HOH 339 A HOH 98 4 HOH HOH 340 A HOH 99 4 HOH HOH 341 A HOH 100 4 HOH HOH 342 A HOH 101 4 HOH HOH 343 A HOH 102 4 HOH HOH 344 A HOH 103 4 HOH HOH 345 A HOH 104 4 HOH HOH 346 A HOH 105 4 HOH HOH 347 A HOH 106 4 HOH HOH 348 A HOH 107 4 HOH HOH 349 A HOH 108 4 HOH HOH 350 A HOH 109 4 HOH HOH 351 A HOH 110 4 HOH HOH 352 A HOH 111 4 HOH HOH 353 A HOH 112 4 HOH HOH 354 A HOH 113 4 HOH HOH 355 A HOH 114 4 HOH HOH 356 A HOH 115 4 HOH HOH 357 A HOH 116 4 HOH HOH 358 A HOH 117 4 HOH HOH 359 A HOH 118 4 HOH HOH 360 A HOH 119 4 HOH HOH 361 A HOH 120 4 HOH HOH 362 A HOH 121 4 HOH HOH 363 A HOH 122 4 HOH HOH 364 A HOH 124 4 HOH HOH 365 A HOH 125 4 HOH HOH 366 A HOH 126 4 HOH HOH 367 A HOH 127 4 HOH HOH 368 A HOH 128 4 HOH HOH 369 A HOH 129 4 HOH HOH 370 A HOH 2 4 HOH HOH 371 A HOH 24 4 HOH HOH 372 A HOH 53 4 HOH HOH 373 A HOH 63 4 HOH HOH 374 A HOH 123 4 HOH HOH 375 A ILE 16 n 1 ILE 16 A ILE 17 n 2 ILE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ASN 20 n 5 ASN 20 A GLU 21 n 6 GLU 21 A VAL 22 n 7 VAL 22 A THR 23 n 8 THR 23 A PRO 24 n 9 PRO 24 A HIS 25 n 10 HIS 25 A SER 26 n 11 SER 26 A ARG 27 n 12 ARG 27 A PRO 28 n 13 PRO 28 A TYR 29 n 14 TYR 29 A MET 30 n 15 MET 30 A VAL 31 n 16 VAL 31 A LEU 32 n 17 LEU 32 A LEU 33 n 18 LEU 33 A SER 34 n 19 SER 34 A LEU 35 n 20 LEU 35 A ASP 36 n 21 ASP 36 A ARG 37 n 22 ARG 37 A LYS 38 n 23 LYS 38 A THR 39 n 24 THR 39 A ILE 40 n 25 ILE 40 A CYS 42 n 26 CYS 42 A ALA 43 n 27 ALA 43 A GLY 44 n 28 GLY 44 A ALA 45 n 29 ALA 45 A LEU 46 n 30 LEU 46 A ILE 47 n 31 ILE 47 A ALA 48 n 32 ALA 48 A LYS 49 n 33 LYS 49 A ASP 50 n 34 ASP 50 A TRP 51 n 35 TRP 51 A VAL 52 n 36 VAL 52 A LEU 53 n 37 LEU 53 A THR 54 n 38 THR 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A ASN 59 n 43 ASN 59 A LEU 60 n 44 LEU 60 A ASN 61 n 45 ASN 61 A LYS 62 n 46 A LYS 62 A ARG 62 n 47 B ARG 62 A SER 63 n 48 SER 63 A GLN 64 n 49 GLN 64 A VAL 66 n 50 VAL 66 A ILE 67 n 51 ILE 67 A LEU 68 n 52 LEU 68 A GLY 69 n 53 GLY 69 A ALA 70 n 54 ALA 70 A HIS 71 n 55 HIS 71 A SER 72 n 56 SER 72 A ILE 73 n 57 ILE 73 A THR 74 n 58 THR 74 A ARG 75 n 59 ARG 75 A GLU 76 n 60 GLU 76 A GLU 77 n 61 GLU 77 A PRO 78 n 62 PRO 78 A THR 79 n 63 THR 79 A LYS 80 n 64 LYS 80 A GLN 81 n 65 GLN 81 A ILE 82 n 66 ILE 82 A MET 83 n 67 MET 83 A LEU 84 n 68 LEU 84 A VAL 85 n 69 VAL 85 A LYS 86 n 70 LYS 86 A LYS 87 n 71 LYS 87 A GLU 88 n 72 GLU 88 A PHE 89 n 73 PHE 89 A PRO 90 n 74 PRO 90 A TYR 91 n 75 TYR 91 A PRO 92 n 76 PRO 92 A CYS 93 n 77 CYS 93 A TYR 94 n 78 TYR 94 A ASP 95 n 79 ASP 95 A PRO 96 n 80 PRO 96 A ALA 97 n 81 ALA 97 A THR 98 n 82 THR 98 A ARG 99 n 83 ARG 99 A GLU 100 n 84 GLU 100 A GLY 101 n 85 GLY 101 A ASP 102 n 86 ASP 102 A LEU 103 n 87 LEU 103 A LYS 104 n 88 LYS 104 A LEU 105 n 89 LEU 105 A LEU 106 n 90 LEU 106 A GLN 107 n 91 GLN 107 A LEU 108 n 92 LEU 108 A THR 109 n 93 THR 109 A GLU 110 n 94 GLU 110 A LYS 111 n 95 LYS 111 A ALA 112 n 96 ALA 112 A LYS 113 n 97 LYS 113 A ILE 114 n 98 ILE 114 A ASN 115 n 99 ASN 115 A LYS 116 n 100 LYS 116 A TYR 117 n 101 TYR 117 A VAL 118 n 102 VAL 118 A THR 119 n 103 THR 119 A ILE 120 n 104 ILE 120 A LEU 121 n 105 LEU 121 A HIS 122 n 106 HIS 122 A LEU 123 n 107 LEU 123 A PRO 124 n 108 PRO 124 A LYS 125 n 109 LYS 125 A LYS 126 n 110 LYS 126 A GLY 127 n 111 GLY 127 A ASP 128 n 112 ASP 128 A ASP 129 n 113 ASP 129 A VAL 130 n 114 VAL 130 A LYS 131 n 115 LYS 131 A PRO 132 n 116 PRO 132 A GLY 133 n 117 GLY 133 A THR 134 n 118 THR 134 A MET 135 n 119 MET 135 A CYS 136 n 120 CYS 136 A GLN 137 n 121 GLN 137 A VAL 138 n 122 VAL 138 A ALA 139 n 123 ALA 139 A GLY 140 n 124 GLY 140 A TRP 141 n 125 TRP 141 A GLY 142 n 126 GLY 142 A ARG 143 n 127 ARG 143 A THR 144 n 128 THR 144 A HIS 145 n 129 HIS 145 A ASN 146 n 130 ASN 146 A SER 148 n 131 SER 148 A ALA 149 n 132 ALA 149 A SER 150 n 133 SER 150 A TRP 151 n 134 TRP 151 A SER 152 n 135 SER 152 A ASP 153 n 136 ASP 153 A THR 154 n 137 THR 154 A LEU 155 n 138 LEU 155 A ARG 156 n 139 ARG 156 A GLU 157 n 140 GLU 157 A VAL 158 n 141 VAL 158 A GLU 159 n 142 GLU 159 A ILE 160 n 143 ILE 160 A THR 161 n 144 THR 161 A ILE 162 n 145 ILE 162 A ILE 163 n 146 ILE 163 A ASP 164 n 147 ASP 164 A ARG 165 n 148 ARG 165 A LYS 166 n 149 LYS 166 A VAL 167 n 150 VAL 167 A CYS 168 n 151 CYS 168 A ASN 169 n 152 ASN 169 A ASP 170 n 153 A ASP 170 A ARG 170 n 154 B ARG 170 A ASN 170 n 155 C ASN 170 A HIS 171 n 156 HIS 171 A TYR 172 n 157 TYR 172 A ASN 173 n 158 ASN 173 A PHE 174 n 159 PHE 174 A ASN 175 n 160 A ASN 175 A PRO 175 n 161 B PRO 175 A VAL 175 n 162 C VAL 175 A ILE 176 n 163 ILE 176 A GLY 177 n 164 GLY 177 A MET 178 n 165 MET 178 A ASN 179 n 166 ASN 179 A MET 180 n 167 MET 180 A VAL 181 n 168 VAL 181 A CYS 182 n 169 CYS 182 A ALA 183 n 170 ALA 183 A GLY 184 n 171 A GLY 184 A SER 184 n 172 B SER 184 A LEU 185 n 173 LEU 185 A ARG 186 n 174 ARG 186 A GLY 187 n 175 GLY 187 A GLY 188 n 176 A GLY 188 A ARG 188 n 177 B ARG 188 A ASP 189 n 178 ASP 189 A SER 190 n 179 SER 190 A CYS 191 n 180 CYS 191 A ASN 192 n 181 ASN 192 A GLY 193 n 182 GLY 193 A ASP 194 n 183 ASP 194 A SER 195 n 184 SER 195 A GLY 196 n 185 GLY 196 A SER 197 n 186 SER 197 A PRO 198 n 187 PRO 198 A LEU 199 n 188 LEU 199 A LEU 200 n 189 LEU 200 A CYS 201 n 190 CYS 201 A GLU 202 n 191 GLU 202 A GLY 207 n 192 GLY 207 A VAL 208 n 193 VAL 208 A PHE 209 n 194 PHE 209 A ARG 210 n 195 ARG 210 A GLY 211 n 196 GLY 211 A VAL 212 n 197 VAL 212 A THR 213 n 198 THR 213 A SER 214 n 199 SER 214 A PHE 215 n 200 PHE 215 A GLY 216 n 201 GLY 216 A LEU 217 n 202 LEU 217 A GLU 218 n 203 GLU 218 A ASN 219 n 204 A ASN 219 A LYS 219 n 205 B LYS 219 A CYS 220 n 206 CYS 220 A GLY 221 n 207 A GLY 221 A ASP 221 n 208 B ASP 221 A PRO 222 n 209 PRO 222 A ARG 223 n 210 ARG 223 A GLY 224 n 211 GLY 224 A PRO 225 n 212 PRO 225 A GLY 226 n 213 GLY 226 A VAL 227 n 214 VAL 227 A TYR 228 n 215 TYR 228 A ILE 229 n 216 ILE 229 A LEU 230 n 217 LEU 230 A LEU 231 n 218 LEU 231 A SER 232 n 219 SER 232 A LYS 233 n 220 A LYS 233 A LYS 233 n 221 B LYS 233 A HIS 234 n 222 HIS 234 A LEU 235 n 223 LEU 235 A ASN 236 n 224 ASN 236 A TRP 237 n 225 TRP 237 A ILE 238 n 226 ILE 238 A ILE 239 n 227 ILE 239 A MET 240 n 228 MET 240 A THR 241 n 229 THR 241 A ILE 242 n 230 ILE 242 A LYS 243 n 231 LYS 243 A GLY 244 n 232 GLY 244 A n 233 245 A n 234 246 A author_and_software_defined_assembly PISA 2 dimeric 1600 -40 20550 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 19.7775000000 A N ASN 20 A N ASN 5 A O GLU 157 A O GLU 140 A N THR 161 A N THR 144 A A O GLY 184 A O GLY 171 A N VAL 181 A N VAL 168 A O TYR 228 A O TYR 215 A O VAL 227 A O VAL 214 A N PHE 215 A N PHE 200 A O ARG 210 A O ARG 195 A N LEU 199 A N LEU 188 A O LEU 200 A O LEU 189 A N GLN 137 A N GLN 121 A N CYS 136 A N CYS 120 A O ILE 160 A O ILE 143 A O MET 83 A O MET 67 A N VAL 66 A N VAL 50 A O ILE 67 A O ILE 51 A N LEU 32 A N LEU 17 A N LEU 33 A N LEU 18 A O CYS 42 A O CYS 26 A N ALA 45 A N ALA 29 A O LEU 53 A O LEU 37 A N VAL 52 A N VAL 36 A O LEU 106 A O LEU 90 A O GLN 107 A O GLN 91 A N LYS 87 A N LYS 71 1 A CD ARG 37 A CD ARG 22 1 Y 1 A NE ARG 37 A NE ARG 22 1 Y 1 A CZ ARG 37 A CZ ARG 22 1 Y 1 A NH1 ARG 37 A NH1 ARG 22 1 Y 1 A NH2 ARG 37 A NH2 ARG 22 1 Y 1 A CD LYS 38 A CD LYS 23 1 Y 1 A CE LYS 38 A CE LYS 23 1 Y 1 A NZ LYS 38 A NZ LYS 23 1 Y B 1 A CG ARG 170 A CG ARG 154 1 Y B 1 A CD ARG 170 A CD ARG 154 1 Y B 1 A NE ARG 170 A NE ARG 154 1 Y B 1 A CZ ARG 170 A CZ ARG 154 1 Y B 1 A NH1 ARG 170 A NH1 ARG 154 1 Y B 1 A NH2 ARG 170 A NH2 ARG 154 1 Y A 1 A CD LYS 233 A CD LYS 220 1 Y A 1 A CE LYS 233 A CE LYS 220 1 Y A 1 A NZ LYS 233 A NZ LYS 220 1 Y 1 A CG LYS 243 A CG LYS 231 1 Y 1 A CD LYS 243 A CD LYS 231 1 Y 1 A CE LYS 243 A CE LYS 231 1 Y 1 A NZ LYS 243 A NZ LYS 231 1 Y 1 A ALA 245 A ALA 233 1 Y 1 A VAL 246 A VAL 234 1 Y 1 A A OG O2 SER 0G6 195 1 2.19 1 A HIS 171 10.03 1 5.70 0.90 118.30 124.00 A A A CB CG OD2 ASP ASP ASP 50 50 50 N 1 16.15 2.30 115.30 131.45 A A A CA CB CG LEU LEU LEU 60 60 60 N 1 5.62 0.90 118.30 123.92 A A A CB CG OD2 ASP ASP ASP 129 129 129 N A A A 1 5.65 0.90 118.30 123.95 A A A CB CG OD2 ASP ASP ASP 170 170 170 N 1 21.16 2.30 115.30 136.46 A A A CA CB CG LEU LEU LEU 185 185 185 N B B B 1 6.32 0.90 118.30 124.62 A A A CB CG OD2 ASP ASP ASP 221 221 221 N 1 A ASP 36 -153.83 -151.48 1 A ASN 61 -114.82 -168.77 1 A HIS 71 -120.11 -59.57 1 A ASN 115 -156.37 -151.23 1 A ARG 143 -39.93 133.75 1 A SER 148 -173.53 -172.39 1 A ALA 149 53.83 -158.38 1 A SER 150 -128.40 -159.94 A 1 A ASP 170 -37.19 159.37 1 A HIS 171 -127.58 -120.90 1 A ILE 242 -64.78 -77.11 35.985 -1.98 0.00 0.00 2.91 0.00 -0.93 0.943 0.922 0.23245 0.19137 0.19339 0.19137 2.40 20.00 660 13319 12664 5.0 99.46 6.903 0.158 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.295 0.223 0.80 0.80 1.40 1DST MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0.223 0.295 2.40 20.00 128 1937 35 0 1774 0.013 0.021 1856 1.543 1.971 2514 6.345 5.000 234 0.105 0.200 282 0.006 0.020 1372 0.207 0.200 832 0.137 0.200 142 0.400 0.200 21 0.141 0.200 7 0.713 1.500 1164 1.390 2.000 1882 2.039 3.000 691 3.433 4.500 629 0.331 0.242 2.461 46 873 20 2.4 20 1ORF 13319 12664 0 0 1 99.5 2.4 2.49 1 94.3 refinement REFMAC 5.1.24 data reduction DENZO data scaling SCALEPACK phasing EPMR The Oligomeric Structure of Human Granzyme A Reveals the Molecular Determinants of Substrate Specificity 1 N N 2 N N 3 N N 4 N N The biological assembly is a dimer generated by the two fold axis: -x, y, 1/2-z A ASP 164 A ASP 147 HELX_P A ASN 169 A ASN 152 1 1 6 A SER 232 A SER 219 HELX_P A LYS 243 A LYS 231 1 2 13 disulf 2.053 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.209 A CYS 93 A SG CYS 77 1_555 A CYS 93 A SG CYS 77 3_555 disulf 2.054 A CYS 136 A SG CYS 120 1_555 A CYS 201 A SG CYS 190 1_555 disulf 2.019 A CYS 168 A SG CYS 151 1_555 A CYS 182 A SG CYS 169 1_555 disulf 2.042 A CYS 191 A SG CYS 180 1_555 A CYS 220 A SG CYS 206 1_555 covale 1.539 one A 0G6 1 B C3 0G6 1_555 A HIS 57 A NE2 HIS 41 1_555 covale 1.381 none A 0G6 1 B C2 0G6 1_555 A SER 195 A OG SER 184 1_555 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE-HYDROLASE INHIBITOR complex A ASN 175 A ASN 160 A B 1 A PRO 175 A PRO 161 -10.40 GRAA_HUMAN UNP 1 29 P12544 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFN PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 29 262 1ORF 16 246 P12544 A 1 1 234 1 ASN engineered mutation GLU 157 1ORF A P12544 UNP 170 140 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASN 20 A ASN 5 A GLU 21 A GLU 6 A ARG 156 A ARG 139 A ILE 163 A ILE 146 A MET 180 A MET 167 A GLY 184 A GLY 171 A A GLY 226 A GLY 213 A LEU 230 A LEU 217 A VAL 208 A VAL 193 A PHE 215 A PHE 200 A PRO 198 A PRO 187 A CYS 201 A CYS 190 A MET 135 A MET 119 A GLY 140 A GLY 124 A ARG 156 A ARG 139 A ILE 163 A ILE 146 A GLN 81 A GLN 65 A MET 83 A MET 67 A GLN 64 A GLN 49 A LEU 68 A LEU 52 A MET 30 A MET 15 A SER 34 A SER 19 A ILE 40 A ILE 25 A ALA 48 A ALA 32 A TRP 51 A TRP 35 A THR 54 A THR 38 A LYS 104 A LYS 88 A LEU 108 A LEU 92 A VAL 85 A VAL 69 A PRO 90 A PRO 74 BINDING SITE FOR RESIDUE 0G6 A 1 A 0G6 1 Software 16 BINDING SITE FOR RESIDUE SO4 A 247 A SO4 247 Software 5 A HIS 57 A HIS 41 16 1_555 A ASP 189 A ASP 178 16 1_555 A SER 190 A SER 179 16 1_555 A CYS 191 A CYS 180 16 1_555 A GLY 193 A GLY 182 16 1_555 A SER 195 A SER 184 16 1_555 A SER 214 A SER 199 16 1_555 A PHE 215 A PHE 200 16 1_555 A GLY 216 A GLY 201 16 1_555 A GLU 218 A GLU 203 16 1_555 A GLY 226 A GLY 213 16 1_555 A HOH 272 D HOH 16 1_555 A HOH 372 D HOH 16 1_555 A HOH 373 D HOH 16 1_555 A HOH 374 D HOH 16 1_555 A HOH 375 D HOH 16 1_555 A SER 184 A SER 172 B 5 1_555 A LEU 185 A LEU 173 5 1_555 A ARG 186 A ARG 174 5 1_555 A ARG 188 A ARG 177 B 5 1_555 A HOH 306 D HOH 5 1_555 20 C 2 2 21