1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lee, K.H. Lee, D.G. Park, Y. Hahm, K.-S. Kim, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy 10.2210/pdb1ot0/pdb pdb_00001ot0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2396.958 50S ribosomal protein L1 N-terminal residues 2-20 1 nat polymer no yes AKKVFKRLEKLFSKIQNWK(NH2) AKKVFKRLEKLFSKIQNWKX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n Helicobacter sample 210 Helicobacter pylori database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-09-07 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-03-21 REL structures with acceptable covalent geometry 80 20 2D TOCSY, NOESY, DQF-COSY, PECOSY 6.0 ambient 318 K DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING 8 lowest energy 1.5MM PEPTIDE; 150MM SDS MICELLES; 90% H2O/10% D2O BRUNGER structure solution CNS 1.1 data analysis XwinNMR 2.5 processing Felix 95.0 BRUNGER refinement CNS 1.1 400 Bruker AVANCE 500 Bruker AVANCE ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A PHE 5 n 5 PHE 5 A LYS 6 n 6 LYS 6 A ARG 7 n 7 ARG 7 A LEU 8 n 8 LEU 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A LEU 11 n 11 LEU 11 A PHE 12 n 12 PHE 12 A SER 13 n 13 SER 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLN 16 n 16 GLN 16 A ASN 17 n 17 ASN 17 A TRP 18 n 18 TRP 18 A LYS 19 n 19 LYS 19 A NH2 20 n 20 NH2 20 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A LYS 3 -176.37 38.99 3 A LYS 2 -98.58 33.24 3 A LYS 3 -140.34 38.56 5 A LYS 2 -98.67 30.58 6 A LYS 2 -99.60 33.48 8 A LYS 3 -172.00 38.70 9 A LYS 2 -97.90 38.79 9 A LYS 3 -99.06 37.84 10 A LYS 3 -167.16 35.91 12 A LYS 2 -98.56 30.63 13 A LYS 2 -98.45 31.80 13 A LYS 3 -104.35 40.77 14 A LYS 2 -98.46 37.83 15 A LYS 2 -98.16 36.62 17 A LYS 2 -99.90 31.34 17 A LYS 3 -156.00 37.25 18 A LYS 2 -98.75 36.14 18 A LYS 3 -99.84 38.77 19 A LYS 2 -98.94 31.27 19 A LYS 3 -166.10 37.91 Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy 1 N N A VAL 4 A VAL 4 HELX_P A LYS 19 A LYS 19 1 1 16 covale 1.328 both A LYS 19 A C LYS 19 1_555 A NH2 20 A N NH2 20 1_555 ANTIBIOTIC coil-helix-coil, Ribosomal protein, rRNA-binding, Antibiotic RL1_HELPY UNP 1 2 P56029 AKKVFKRLEKLFSKIQNDK 2 20 1OT0 1 19 P56029 A 1 1 19 1 ASP conflict TRP 18 1OT0 A P56029 UNP 19 18 BINDING SITE FOR RESIDUE NH2 A 20 A NH2 20 Software 2 A GLN 16 A GLN 16 2 1_555 A LYS 19 A LYS 19 2 1_555