0.022077
0.000000
0.000000
0.000000
0.017478
0.000000
0.000000
0.000000
0.011787
0.00000
0.00000
0.00000
Marino, M.
Copp, J.
Dramsi, S.
Chapman, T.
van der Geer, P.
Cossart, P.
Ghosh, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
45.296
57.215
84.840
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
316
379
386
10.1016/j.bbrc.2004.02.064
15020228
Characterization of the calcium-binding sites of Listeria monocytogenes InlB
2004
10.2210/pdb1otm/pdb
pdb_00001otm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
Osmic
IMAGE PLATE
2000-02-11
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
26128.980
internalin B
LRR domain
D51A, D59A
1
man
polymer
18.015
water
123
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMASETITVSTPIKQIFPDAAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ
GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG
NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN
MGSSHHHHHHSSGLVPRGSHMASETITVSTPIKQIFPDAAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ
GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG
NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Listeria
Escherichia
Escherichia coli
sample
1639
Listeria monocytogenes
469008
Escherichia coli BL21(DE3)
BL21(DE3)
T7 promoter
plasmid
pet28b (Novagen)
1
2.26
45.09
VAPOR DIFFUSION, HANGING DROP
6.5
Peg 8000, Mes, Calcium acetate, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
pdbx_unobs_or_zero_occ_atoms
software
database_2
pdbx_unobs_or_zero_occ_atoms
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Advisory
Refinement description
Advisory
Database references
Data collection
Refinement description
1
0
2004-03-30
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-27
1
5
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Internalin B LRR domain
RCSB
Y
RCSB
2003-03-21
REL
REL
HOH
water
1D0B
PDB ENTRY 1d0b
PDB
experimental model
HOH
1
2
HOH
HOH
249
A
HOH
2
2
HOH
HOH
250
A
HOH
3
2
HOH
HOH
251
A
HOH
4
2
HOH
HOH
252
A
HOH
5
2
HOH
HOH
253
A
HOH
6
2
HOH
HOH
254
A
HOH
7
2
HOH
HOH
255
A
HOH
8
2
HOH
HOH
256
A
HOH
9
2
HOH
HOH
257
A
HOH
10
2
HOH
HOH
258
A
HOH
11
2
HOH
HOH
259
A
HOH
12
2
HOH
HOH
260
A
HOH
13
2
HOH
HOH
261
A
HOH
14
2
HOH
HOH
262
A
HOH
15
2
HOH
HOH
263
A
HOH
16
2
HOH
HOH
264
A
HOH
17
2
HOH
HOH
265
A
HOH
18
2
HOH
HOH
266
A
HOH
19
2
HOH
HOH
267
A
HOH
20
2
HOH
HOH
268
A
HOH
21
2
HOH
HOH
269
A
HOH
22
2
HOH
HOH
270
A
HOH
23
2
HOH
HOH
271
A
HOH
24
2
HOH
HOH
272
A
HOH
25
2
HOH
HOH
273
A
HOH
26
2
HOH
HOH
274
A
HOH
27
2
HOH
HOH
275
A
HOH
28
2
HOH
HOH
276
A
HOH
29
2
HOH
HOH
277
A
HOH
30
2
HOH
HOH
278
A
HOH
31
2
HOH
HOH
279
A
HOH
32
2
HOH
HOH
280
A
HOH
33
2
HOH
HOH
281
A
HOH
34
2
HOH
HOH
282
A
HOH
35
2
HOH
HOH
283
A
HOH
36
2
HOH
HOH
284
A
HOH
37
2
HOH
HOH
285
A
HOH
38
2
HOH
HOH
286
A
HOH
39
2
HOH
HOH
287
A
HOH
40
2
HOH
HOH
288
A
HOH
41
2
HOH
HOH
289
A
HOH
42
2
HOH
HOH
290
A
HOH
43
2
HOH
HOH
291
A
HOH
44
2
HOH
HOH
292
A
HOH
45
2
HOH
HOH
293
A
HOH
46
2
HOH
HOH
294
A
HOH
47
2
HOH
HOH
295
A
HOH
48
2
HOH
HOH
296
A
HOH
49
2
HOH
HOH
297
A
HOH
50
2
HOH
HOH
298
A
HOH
51
2
HOH
HOH
299
A
HOH
52
2
HOH
HOH
300
A
HOH
53
2
HOH
HOH
301
A
HOH
54
2
HOH
HOH
302
A
HOH
55
2
HOH
HOH
303
A
HOH
56
2
HOH
HOH
304
A
HOH
57
2
HOH
HOH
305
A
HOH
58
2
HOH
HOH
306
A
HOH
59
2
HOH
HOH
307
A
HOH
60
2
HOH
HOH
308
A
HOH
61
2
HOH
HOH
309
A
HOH
62
2
HOH
HOH
310
A
HOH
63
2
HOH
HOH
311
A
HOH
64
2
HOH
HOH
312
A
HOH
65
2
HOH
HOH
313
A
HOH
66
2
HOH
HOH
314
A
HOH
67
2
HOH
HOH
315
A
HOH
68
2
HOH
HOH
316
A
HOH
69
2
HOH
HOH
317
A
HOH
70
2
HOH
HOH
318
A
HOH
71
2
HOH
HOH
319
A
HOH
72
2
HOH
HOH
320
A
HOH
73
2
HOH
HOH
321
A
HOH
74
2
HOH
HOH
322
A
HOH
75
2
HOH
HOH
323
A
HOH
76
2
HOH
HOH
324
A
HOH
77
2
HOH
HOH
325
A
HOH
78
2
HOH
HOH
326
A
HOH
79
2
HOH
HOH
327
A
HOH
80
2
HOH
HOH
328
A
HOH
81
2
HOH
HOH
329
A
HOH
82
2
HOH
HOH
330
A
HOH
83
2
HOH
HOH
331
A
HOH
84
2
HOH
HOH
332
A
HOH
85
2
HOH
HOH
333
A
HOH
86
2
HOH
HOH
334
A
HOH
87
2
HOH
HOH
335
A
HOH
88
2
HOH
HOH
336
A
HOH
89
2
HOH
HOH
337
A
HOH
90
2
HOH
HOH
338
A
HOH
91
2
HOH
HOH
339
A
HOH
92
2
HOH
HOH
340
A
HOH
93
2
HOH
HOH
341
A
HOH
94
2
HOH
HOH
342
A
HOH
95
2
HOH
HOH
343
A
HOH
96
2
HOH
HOH
344
A
HOH
97
2
HOH
HOH
345
A
HOH
98
2
HOH
HOH
346
A
HOH
99
2
HOH
HOH
347
A
HOH
100
2
HOH
HOH
348
A
HOH
101
2
HOH
HOH
349
A
HOH
102
2
HOH
HOH
350
A
HOH
103
2
HOH
HOH
351
A
HOH
104
2
HOH
HOH
352
A
HOH
105
2
HOH
HOH
353
A
HOH
106
2
HOH
HOH
354
A
HOH
107
2
HOH
HOH
355
A
HOH
108
2
HOH
HOH
356
A
HOH
109
2
HOH
HOH
357
A
HOH
110
2
HOH
HOH
358
A
HOH
111
2
HOH
HOH
359
A
HOH
112
2
HOH
HOH
360
A
HOH
113
2
HOH
HOH
361
A
HOH
114
2
HOH
HOH
362
A
HOH
115
2
HOH
HOH
363
A
HOH
116
2
HOH
HOH
364
A
HOH
117
2
HOH
HOH
365
A
HOH
118
2
HOH
HOH
366
A
HOH
119
2
HOH
HOH
367
A
HOH
120
2
HOH
HOH
368
A
HOH
121
2
HOH
HOH
369
A
HOH
122
2
HOH
HOH
370
A
HOH
123
2
HOH
HOH
371
A
n
1
13
A
n
2
14
A
n
3
15
A
n
4
16
A
n
5
17
A
n
6
18
A
n
7
19
A
n
8
20
A
n
9
21
A
n
10
22
A
n
11
23
A
n
12
24
A
n
13
25
A
n
14
26
A
n
15
27
A
n
16
28
A
n
17
29
A
n
18
30
A
n
19
31
A
n
20
32
A
n
21
33
A
n
22
34
A
n
23
35
A
GLU
36
n
24
GLU
36
A
THR
37
n
25
THR
37
A
ILE
38
n
26
ILE
38
A
THR
39
n
27
THR
39
A
VAL
40
n
28
VAL
40
A
SER
41
n
29
SER
41
A
THR
42
n
30
THR
42
A
PRO
43
n
31
PRO
43
A
ILE
44
n
32
ILE
44
A
LYS
45
n
33
LYS
45
A
GLN
46
n
34
GLN
46
A
ILE
47
n
35
ILE
47
A
PHE
48
n
36
PHE
48
A
PRO
49
n
37
PRO
49
A
ASP
50
n
38
ASP
50
A
ALA
51
n
39
ALA
51
A
ALA
52
n
40
ALA
52
A
PHE
53
n
41
PHE
53
A
ALA
54
n
42
ALA
54
A
GLU
55
n
43
GLU
55
A
THR
56
n
44
THR
56
A
ILE
57
n
45
ILE
57
A
LYS
58
n
46
LYS
58
A
ALA
59
n
47
ALA
59
A
ASN
60
n
48
ASN
60
A
LEU
61
n
49
LEU
61
A
LYS
62
n
50
LYS
62
A
LYS
63
n
51
LYS
63
A
LYS
64
n
52
LYS
64
A
SER
65
n
53
SER
65
A
VAL
66
n
54
VAL
66
A
THR
67
n
55
THR
67
A
ASP
68
n
56
ASP
68
A
ALA
69
n
57
ALA
69
A
VAL
70
n
58
VAL
70
A
THR
71
n
59
THR
71
A
GLN
72
n
60
GLN
72
A
ASN
73
n
61
ASN
73
A
GLU
74
n
62
GLU
74
A
LEU
75
n
63
LEU
75
A
ASN
76
n
64
ASN
76
A
SER
77
n
65
SER
77
A
ILE
78
n
66
ILE
78
A
ASP
79
n
67
ASP
79
A
GLN
80
n
68
GLN
80
A
ILE
81
n
69
ILE
81
A
ILE
82
n
70
ILE
82
A
ALA
83
n
71
ALA
83
A
ASN
84
n
72
ASN
84
A
ASN
85
n
73
ASN
85
A
SER
86
n
74
SER
86
A
ASP
87
n
75
ASP
87
A
ILE
88
n
76
ILE
88
A
LYS
89
n
77
LYS
89
A
SER
90
n
78
SER
90
A
VAL
91
n
79
VAL
91
A
GLN
92
n
80
GLN
92
A
GLY
93
n
81
GLY
93
A
ILE
94
n
82
ILE
94
A
GLN
95
n
83
GLN
95
A
TYR
96
n
84
TYR
96
A
LEU
97
n
85
LEU
97
A
PRO
98
n
86
PRO
98
A
ASN
99
n
87
ASN
99
A
VAL
100
n
88
VAL
100
A
THR
101
n
89
THR
101
A
LYS
102
n
90
LYS
102
A
LEU
103
n
91
LEU
103
A
PHE
104
n
92
PHE
104
A
LEU
105
n
93
LEU
105
A
ASN
106
n
94
ASN
106
A
GLY
107
n
95
GLY
107
A
ASN
108
n
96
ASN
108
A
LYS
109
n
97
LYS
109
A
LEU
110
n
98
LEU
110
A
THR
111
n
99
THR
111
A
ASP
112
n
100
ASP
112
A
ILE
113
n
101
ILE
113
A
LYS
114
n
102
LYS
114
A
PRO
115
n
103
PRO
115
A
LEU
116
n
104
LEU
116
A
THR
117
n
105
THR
117
A
ASN
118
n
106
ASN
118
A
LEU
119
n
107
LEU
119
A
LYS
120
n
108
LYS
120
A
ASN
121
n
109
ASN
121
A
LEU
122
n
110
LEU
122
A
GLY
123
n
111
GLY
123
A
TRP
124
n
112
TRP
124
A
LEU
125
n
113
LEU
125
A
PHE
126
n
114
PHE
126
A
LEU
127
n
115
LEU
127
A
ASP
128
n
116
ASP
128
A
GLU
129
n
117
GLU
129
A
ASN
130
n
118
ASN
130
A
LYS
131
n
119
LYS
131
A
ILE
132
n
120
ILE
132
A
LYS
133
n
121
LYS
133
A
ASP
134
n
122
ASP
134
A
LEU
135
n
123
LEU
135
A
SER
136
n
124
SER
136
A
SER
137
n
125
SER
137
A
LEU
138
n
126
LEU
138
A
LYS
139
n
127
LYS
139
A
ASP
140
n
128
ASP
140
A
LEU
141
n
129
LEU
141
A
LYS
142
n
130
LYS
142
A
LYS
143
n
131
LYS
143
A
LEU
144
n
132
LEU
144
A
LYS
145
n
133
LYS
145
A
SER
146
n
134
SER
146
A
LEU
147
n
135
LEU
147
A
SER
148
n
136
SER
148
A
LEU
149
n
137
LEU
149
A
GLU
150
n
138
GLU
150
A
HIS
151
n
139
HIS
151
A
ASN
152
n
140
ASN
152
A
GLY
153
n
141
GLY
153
A
ILE
154
n
142
ILE
154
A
SER
155
n
143
SER
155
A
ASP
156
n
144
ASP
156
A
ILE
157
n
145
ILE
157
A
ASN
158
n
146
ASN
158
A
GLY
159
n
147
GLY
159
A
LEU
160
n
148
LEU
160
A
VAL
161
n
149
VAL
161
A
HIS
162
n
150
HIS
162
A
LEU
163
n
151
LEU
163
A
PRO
164
n
152
PRO
164
A
GLN
165
n
153
GLN
165
A
LEU
166
n
154
LEU
166
A
GLU
167
n
155
GLU
167
A
SER
168
n
156
SER
168
A
LEU
169
n
157
LEU
169
A
TYR
170
n
158
TYR
170
A
LEU
171
n
159
LEU
171
A
GLY
172
n
160
GLY
172
A
ASN
173
n
161
ASN
173
A
ASN
174
n
162
ASN
174
A
LYS
175
n
163
LYS
175
A
ILE
176
n
164
ILE
176
A
THR
177
n
165
THR
177
A
ASP
178
n
166
ASP
178
A
ILE
179
n
167
ILE
179
A
THR
180
n
168
THR
180
A
VAL
181
n
169
VAL
181
A
LEU
182
n
170
LEU
182
A
SER
183
n
171
SER
183
A
ARG
184
n
172
ARG
184
A
LEU
185
n
173
LEU
185
A
THR
186
n
174
THR
186
A
LYS
187
n
175
LYS
187
A
LEU
188
n
176
LEU
188
A
ASP
189
n
177
ASP
189
A
THR
190
n
178
THR
190
A
LEU
191
n
179
LEU
191
A
SER
192
n
180
SER
192
A
LEU
193
n
181
LEU
193
A
GLU
194
n
182
GLU
194
A
ASP
195
n
183
ASP
195
A
ASN
196
n
184
ASN
196
A
GLN
197
n
185
GLN
197
A
ILE
198
n
186
ILE
198
A
SER
199
n
187
SER
199
A
ASP
200
n
188
ASP
200
A
ILE
201
n
189
ILE
201
A
VAL
202
n
190
VAL
202
A
PRO
203
n
191
PRO
203
A
LEU
204
n
192
LEU
204
A
ALA
205
n
193
ALA
205
A
GLY
206
n
194
GLY
206
A
LEU
207
n
195
LEU
207
A
THR
208
n
196
THR
208
A
LYS
209
n
197
LYS
209
A
LEU
210
n
198
LEU
210
A
GLN
211
n
199
GLN
211
A
ASN
212
n
200
ASN
212
A
LEU
213
n
201
LEU
213
A
TYR
214
n
202
TYR
214
A
LEU
215
n
203
LEU
215
A
SER
216
n
204
SER
216
A
LYS
217
n
205
LYS
217
A
ASN
218
n
206
ASN
218
A
HIS
219
n
207
HIS
219
A
ILE
220
n
208
ILE
220
A
SER
221
n
209
SER
221
A
ASP
222
n
210
ASP
222
A
LEU
223
n
211
LEU
223
A
ARG
224
n
212
ARG
224
A
ALA
225
n
213
ALA
225
A
LEU
226
n
214
LEU
226
A
ALA
227
n
215
ALA
227
A
GLY
228
n
216
GLY
228
A
LEU
229
n
217
LEU
229
A
LYS
230
n
218
LYS
230
A
ASN
231
n
219
ASN
231
A
LEU
232
n
220
LEU
232
A
ASP
233
n
221
ASP
233
A
VAL
234
n
222
VAL
234
A
LEU
235
n
223
LEU
235
A
GLU
236
n
224
GLU
236
A
LEU
237
n
225
LEU
237
A
PHE
238
n
226
PHE
238
A
SER
239
n
227
SER
239
A
GLN
240
n
228
GLN
240
A
GLU
241
n
229
GLU
241
A
CYS
242
n
230
CYS
242
A
n
231
243
A
n
232
244
A
n
233
245
A
n
234
246
A
n
235
247
A
n
236
248
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
42
A
N
THR
30
A
O
VAL
70
A
O
VAL
58
A
N
ILE
81
A
N
ILE
69
A
O
PHE
104
A
O
PHE
92
A
N
LEU
103
A
N
LEU
91
A
O
PHE
126
A
O
PHE
114
A
N
LEU
125
A
N
LEU
113
A
O
SER
146
A
O
SER
134
A
N
LEU
147
A
N
LEU
135
A
O
TYR
170
A
O
TYR
158
A
N
LEU
169
A
N
LEU
157
A
O
SER
192
A
O
SER
180
A
N
LEU
191
A
N
LEU
179
A
O
ASN
212
A
O
ASN
200
A
N
LEU
213
A
N
LEU
201
A
O
VAL
234
A
O
VAL
222
1
A
CE
LYS
62
A
CE
LYS
50
0
Y
1
A
NZ
LYS
62
A
NZ
LYS
50
0
Y
1
A
CD
LYS
64
A
CD
LYS
52
0
Y
1
A
CE
LYS
64
A
CE
LYS
52
0
Y
1
A
NZ
LYS
64
A
NZ
LYS
52
0
Y
1
A
CE
LYS
120
A
CE
LYS
108
0
Y
1
A
NZ
LYS
120
A
NZ
LYS
108
0
Y
1
A
CE
LYS
217
A
CE
LYS
205
0
Y
1
A
NZ
LYS
217
A
NZ
LYS
205
0
Y
1
A
CD
GLU
241
A
CD
GLU
229
0
Y
1
A
OE1
GLU
241
A
OE1
GLU
229
0
Y
1
A
OE2
GLU
241
A
OE2
GLU
229
0
Y
1
A
MET
13
A
MET
1
1
Y
1
A
GLY
14
A
GLY
2
1
Y
1
A
SER
15
A
SER
3
1
Y
1
A
SER
16
A
SER
4
1
Y
1
A
HIS
17
A
HIS
5
1
Y
1
A
HIS
18
A
HIS
6
1
Y
1
A
HIS
19
A
HIS
7
1
Y
1
A
HIS
20
A
HIS
8
1
Y
1
A
HIS
21
A
HIS
9
1
Y
1
A
HIS
22
A
HIS
10
1
Y
1
A
SER
23
A
SER
11
1
Y
1
A
SER
24
A
SER
12
1
Y
1
A
GLY
25
A
GLY
13
1
Y
1
A
LEU
26
A
LEU
14
1
Y
1
A
VAL
27
A
VAL
15
1
Y
1
A
PRO
28
A
PRO
16
1
Y
1
A
ARG
29
A
ARG
17
1
Y
1
A
GLY
30
A
GLY
18
1
Y
1
A
SER
31
A
SER
19
1
Y
1
A
HIS
32
A
HIS
20
1
Y
1
A
MET
33
A
MET
21
1
Y
1
A
ALA
34
A
ALA
22
1
Y
1
A
SER
35
A
SER
23
1
Y
1
A
LEU
243
A
LEU
231
1
Y
1
A
ASN
244
A
ASN
232
1
Y
1
A
LYS
245
A
LYS
233
1
Y
1
A
PRO
246
A
PRO
234
1
Y
1
A
ILE
247
A
ILE
235
1
Y
1
A
ASN
248
A
ASN
236
1
Y
1
A
ALA
83
-140.91
52.75
1
A
LEU
97
-118.28
75.81
1
A
ASN
108
-123.38
-158.67
1
A
THR
111
-136.24
-35.20
1
A
ASN
174
-135.63
-157.18
1
A
ASP
195
60.64
61.38
1
A
ASN
196
-138.63
-149.08
0.2401
0.201
0.206
0.206
1.93
15
1631
17134
16483
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB ENTRY 1d0b
Engh & Huber
1.93
15
123
1739
0
0
1616
.004235
1.18043
1.93
15.0
1OTM
17061
16502
0
0
0.051
1
18.0
2.93
96.7
1.93
2.00
1.56
0.55
95.5
data collection
MAR345
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Calcium-binding mutant of the internalin B LRR domain
1
N
N
2
N
N
A
ILE
44
A
ILE
32
HELX_P
A
PHE
48
A
PHE
36
1
1
5
A
ASP
50
A
ASP
38
HELX_P
A
LEU
61
A
LEU
49
1
2
12
A
THR
71
A
THR
59
HELX_P
A
SER
77
A
SER
65
1
3
7
A
GLY
93
A
GLY
81
HELX_P
A
LEU
97
A
LEU
85
5
4
5
A
ILE
113
A
ILE
101
HELX_P
A
THR
117
A
THR
105
5
5
5
A
LEU
135
A
LEU
123
HELX_P
A
LYS
139
A
LYS
127
5
6
5
A
ILE
157
A
ILE
145
HELX_P
A
LEU
163
A
LEU
151
5
7
7
A
ILE
179
A
ILE
167
HELX_P
A
LEU
185
A
LEU
173
5
8
7
A
ILE
201
A
ILE
189
HELX_P
A
ALA
205
A
ALA
193
5
9
5
A
LEU
223
A
LEU
211
HELX_P
A
ALA
227
A
ALA
215
5
10
5
CELL ADHESION
internalin, InlB, calcium-binding, invasion, Listeria, CELL ADHESION
INLB_LISMO
UNP
1
36
P25147
ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP
LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED
NQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN
36
248
1OTM
36
248
P25147
A
1
24
236
1
expression tag
MET
13
1OTM
A
P25147
UNP
1
1
expression tag
GLY
14
1OTM
A
P25147
UNP
2
1
expression tag
SER
15
1OTM
A
P25147
UNP
3
1
expression tag
SER
16
1OTM
A
P25147
UNP
4
1
expression tag
HIS
17
1OTM
A
P25147
UNP
5
1
expression tag
HIS
18
1OTM
A
P25147
UNP
6
1
expression tag
HIS
19
1OTM
A
P25147
UNP
7
1
expression tag
HIS
20
1OTM
A
P25147
UNP
8
1
expression tag
HIS
21
1OTM
A
P25147
UNP
9
1
expression tag
HIS
22
1OTM
A
P25147
UNP
10
1
expression tag
SER
23
1OTM
A
P25147
UNP
11
1
expression tag
SER
24
1OTM
A
P25147
UNP
12
1
expression tag
GLY
25
1OTM
A
P25147
UNP
13
1
expression tag
LEU
26
1OTM
A
P25147
UNP
14
1
expression tag
VAL
27
1OTM
A
P25147
UNP
15
1
expression tag
PRO
28
1OTM
A
P25147
UNP
16
1
expression tag
ARG
29
1OTM
A
P25147
UNP
17
1
expression tag
GLY
30
1OTM
A
P25147
UNP
18
1
expression tag
SER
31
1OTM
A
P25147
UNP
19
1
expression tag
HIS
32
1OTM
A
P25147
UNP
20
1
expression tag
MET
33
1OTM
A
P25147
UNP
21
1
expression tag
ALA
34
1OTM
A
P25147
UNP
22
1
expression tag
SER
35
1OTM
A
P25147
UNP
23
1
PRO
variant
SER
41
1OTM
A
P25147
UNP
41
29
1
SER
variant
PRO
49
1OTM
A
P25147
UNP
49
37
1
ASP
engineered mutation
ALA
51
1OTM
A
P25147
UNP
51
39
1
ASP
engineered mutation
ALA
59
1OTM
A
P25147
UNP
59
47
1
ALA
variant
THR
117
1OTM
A
P25147
UNP
117
105
1
VAL
variant
ILE
132
1OTM
A
P25147
UNP
132
120
2
8
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
THR
42
A
THR
30
A
PRO
43
A
PRO
31
A
ALA
69
A
ALA
57
A
VAL
70
A
VAL
58
A
GLN
80
A
GLN
68
A
ILE
82
A
ILE
70
A
LYS
102
A
LYS
90
A
PHE
104
A
PHE
92
A
TRP
124
A
TRP
112
A
PHE
126
A
PHE
114
A
SER
146
A
SER
134
A
SER
148
A
SER
136
A
SER
168
A
SER
156
A
TYR
170
A
TYR
158
A
THR
190
A
THR
178
A
SER
192
A
SER
180
A
ASN
212
A
ASN
200
A
TYR
214
A
TYR
202
A
VAL
234
A
VAL
222
A
GLU
236
A
GLU
224
19
P 21 21 21