0.020360 0.000000 0.000188 0.000000 0.024938 0.000000 0.000000 0.000000 0.019752 0.00000 0.00000 0.00000 Yuan, H.S. Li, C.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 90.53 90.00 49.115 40.099 50.631 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 22 4014 4025 10.1093/emboj/cdg377 12881435 DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site. 2003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-12-16 ADSC QUANTUM 4 SI 111 + GE 220 MAD M x-ray 1 0.9795 1.0 0.9796 1.0 0.9600 1.0 BL-18B Photon Factory 0.9795, 0.9796, 0.9600 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 24695.891 Nuclease 3.1.-.- residue 19-228 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 194 nat water VVN Nuclease no yes APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEHVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRL(MSE)EADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCE(MSE)QVNFKQRKV(MSE)PPDRA RGSIARTYLY(MSE)SQEYGFQLSKQQQQL(MSE)QAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSC APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEHVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMS QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Vibrio Escherichia sample 672 Vibrio vulnificus 562 Escherichia coli B834(DE3) plasmid pTYB2 1 1.79 30.61 VAPOR DIFFUSION, HANGING DROP 6.5 PEG8000, ammonium acetate, magnesium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Version format compliance Version format compliance 1 0 2003-08-05 1 1 2008-04-29 1 2 2011-07-13 1OUP contains the same protein complexed with DNA RCSB Y PDBJ 2003-03-25 REL REL MG MAGNESIUM ION HOH water MG 494 2 MG MG 494 A TIP 300 3 HOH HOH 300 A TIP 301 3 HOH HOH 301 A TIP 302 3 HOH HOH 302 A TIP 303 3 HOH HOH 303 A TIP 304 3 HOH HOH 304 A TIP 305 3 HOH HOH 305 A TIP 306 3 HOH HOH 306 A TIP 307 3 HOH HOH 307 A TIP 308 3 HOH HOH 308 A TIP 309 3 HOH HOH 309 A TIP 310 3 HOH HOH 310 A TIP 311 3 HOH HOH 311 A TIP 312 3 HOH HOH 312 A TIP 313 3 HOH HOH 313 A TIP 314 3 HOH HOH 314 A TIP 315 3 HOH HOH 315 A TIP 316 3 HOH HOH 316 A TIP 317 3 HOH HOH 317 A TIP 318 3 HOH HOH 318 A TIP 319 3 HOH HOH 319 A TIP 320 3 HOH HOH 320 A TIP 321 3 HOH HOH 321 A TIP 322 3 HOH HOH 322 A TIP 323 3 HOH HOH 323 A TIP 324 3 HOH HOH 324 A TIP 325 3 HOH HOH 325 A TIP 326 3 HOH HOH 326 A TIP 327 3 HOH HOH 327 A TIP 328 3 HOH HOH 328 A TIP 329 3 HOH HOH 329 A TIP 330 3 HOH HOH 330 A TIP 331 3 HOH HOH 331 A TIP 332 3 HOH HOH 332 A TIP 333 3 HOH HOH 333 A TIP 334 3 HOH HOH 334 A TIP 335 3 HOH HOH 335 A TIP 336 3 HOH HOH 336 A TIP 337 3 HOH HOH 337 A TIP 338 3 HOH HOH 338 A TIP 339 3 HOH HOH 339 A TIP 340 3 HOH HOH 340 A TIP 341 3 HOH HOH 341 A TIP 342 3 HOH HOH 342 A TIP 343 3 HOH HOH 343 A TIP 344 3 HOH HOH 344 A TIP 345 3 HOH HOH 345 A TIP 346 3 HOH HOH 346 A TIP 347 3 HOH HOH 347 A TIP 348 3 HOH HOH 348 A TIP 349 3 HOH HOH 349 A TIP 350 3 HOH HOH 350 A TIP 351 3 HOH HOH 351 A TIP 352 3 HOH HOH 352 A TIP 353 3 HOH HOH 353 A TIP 354 3 HOH HOH 354 A TIP 355 3 HOH HOH 355 A TIP 356 3 HOH HOH 356 A TIP 357 3 HOH HOH 357 A TIP 358 3 HOH HOH 358 A TIP 359 3 HOH HOH 359 A TIP 360 3 HOH HOH 360 A TIP 361 3 HOH HOH 361 A TIP 362 3 HOH HOH 362 A TIP 363 3 HOH HOH 363 A TIP 364 3 HOH HOH 364 A TIP 365 3 HOH HOH 365 A TIP 366 3 HOH HOH 366 A TIP 367 3 HOH HOH 367 A TIP 368 3 HOH HOH 368 A TIP 369 3 HOH HOH 369 A TIP 370 3 HOH HOH 370 A TIP 371 3 HOH HOH 371 A TIP 372 3 HOH HOH 372 A TIP 373 3 HOH HOH 373 A TIP 374 3 HOH HOH 374 A TIP 375 3 HOH HOH 375 A TIP 376 3 HOH HOH 376 A TIP 377 3 HOH HOH 377 A TIP 378 3 HOH HOH 378 A TIP 379 3 HOH HOH 379 A TIP 380 3 HOH HOH 380 A TIP 381 3 HOH HOH 381 A TIP 382 3 HOH HOH 382 A TIP 383 3 HOH HOH 383 A TIP 384 3 HOH HOH 384 A TIP 385 3 HOH HOH 385 A TIP 386 3 HOH HOH 386 A TIP 387 3 HOH HOH 387 A TIP 388 3 HOH HOH 388 A TIP 389 3 HOH HOH 389 A TIP 390 3 HOH HOH 390 A TIP 391 3 HOH HOH 391 A TIP 392 3 HOH HOH 392 A TIP 393 3 HOH HOH 393 A TIP 394 3 HOH HOH 394 A TIP 395 3 HOH HOH 395 A TIP 396 3 HOH HOH 396 A TIP 397 3 HOH HOH 397 A TIP 398 3 HOH HOH 398 A TIP 399 3 HOH HOH 399 A TIP 400 3 HOH HOH 400 A TIP 401 3 HOH HOH 401 A TIP 402 3 HOH HOH 402 A TIP 403 3 HOH HOH 403 A TIP 404 3 HOH HOH 404 A TIP 405 3 HOH HOH 405 A TIP 406 3 HOH HOH 406 A TIP 407 3 HOH HOH 407 A TIP 408 3 HOH HOH 408 A TIP 409 3 HOH HOH 409 A TIP 410 3 HOH HOH 410 A TIP 411 3 HOH HOH 411 A TIP 412 3 HOH HOH 412 A TIP 413 3 HOH HOH 413 A TIP 414 3 HOH HOH 414 A TIP 415 3 HOH HOH 415 A TIP 416 3 HOH HOH 416 A TIP 417 3 HOH HOH 417 A TIP 418 3 HOH HOH 418 A TIP 419 3 HOH HOH 419 A TIP 420 3 HOH HOH 420 A TIP 421 3 HOH HOH 421 A TIP 422 3 HOH HOH 422 A TIP 423 3 HOH HOH 423 A TIP 424 3 HOH HOH 424 A TIP 425 3 HOH HOH 425 A TIP 426 3 HOH HOH 426 A TIP 427 3 HOH HOH 427 A TIP 428 3 HOH HOH 428 A TIP 429 3 HOH HOH 429 A TIP 430 3 HOH HOH 430 A TIP 431 3 HOH HOH 431 A TIP 432 3 HOH HOH 432 A TIP 433 3 HOH HOH 433 A TIP 434 3 HOH HOH 434 A TIP 435 3 HOH HOH 435 A TIP 436 3 HOH HOH 436 A TIP 437 3 HOH HOH 437 A TIP 438 3 HOH HOH 438 A TIP 439 3 HOH HOH 439 A TIP 440 3 HOH HOH 440 A TIP 441 3 HOH HOH 441 A TIP 442 3 HOH HOH 442 A TIP 443 3 HOH HOH 443 A TIP 444 3 HOH HOH 444 A TIP 445 3 HOH HOH 445 A TIP 446 3 HOH HOH 446 A TIP 447 3 HOH HOH 447 A TIP 448 3 HOH HOH 448 A TIP 449 3 HOH HOH 449 A TIP 450 3 HOH HOH 450 A TIP 451 3 HOH HOH 451 A TIP 452 3 HOH HOH 452 A TIP 453 3 HOH HOH 453 A TIP 454 3 HOH HOH 454 A TIP 455 3 HOH HOH 455 A TIP 456 3 HOH HOH 456 A TIP 457 3 HOH HOH 457 A TIP 458 3 HOH HOH 458 A TIP 459 3 HOH HOH 459 A TIP 460 3 HOH HOH 460 A TIP 461 3 HOH HOH 461 A TIP 462 3 HOH HOH 462 A TIP 463 3 HOH HOH 463 A TIP 464 3 HOH HOH 464 A TIP 465 3 HOH HOH 465 A TIP 466 3 HOH HOH 466 A TIP 467 3 HOH HOH 467 A TIP 468 3 HOH HOH 468 A TIP 469 3 HOH HOH 469 A TIP 470 3 HOH HOH 470 A TIP 471 3 HOH HOH 471 A TIP 472 3 HOH HOH 472 A TIP 473 3 HOH HOH 473 A TIP 474 3 HOH HOH 474 A TIP 475 3 HOH HOH 475 A TIP 476 3 HOH HOH 476 A TIP 477 3 HOH HOH 477 A TIP 478 3 HOH HOH 478 A TIP 479 3 HOH HOH 479 A TIP 480 3 HOH HOH 480 A TIP 481 3 HOH HOH 481 A TIP 482 3 HOH HOH 482 A TIP 483 3 HOH HOH 483 A TIP 484 3 HOH HOH 484 A TIP 485 3 HOH HOH 485 A TIP 486 3 HOH HOH 486 A TIP 487 3 HOH HOH 487 A TIP 488 3 HOH HOH 488 A TIP 489 3 HOH HOH 489 A TIP 490 3 HOH HOH 490 A TIP 491 3 HOH HOH 491 A TIP 492 3 HOH HOH 492 A TIP 493 3 HOH HOH 493 A ALA 19 n 1 ALA 19 A PRO 20 n 2 PRO 20 A PRO 21 n 3 PRO 21 A SER 22 n 4 SER 22 A SER 23 n 5 SER 23 A PHE 24 n 6 PHE 24 A SER 25 n 7 SER 25 A ALA 26 n 8 ALA 26 A ALA 27 n 9 ALA 27 A LYS 28 n 10 LYS 28 A GLN 29 n 11 GLN 29 A GLN 30 n 12 GLN 30 A ALA 31 n 13 ALA 31 A VAL 32 n 14 VAL 32 A LYS 33 n 15 LYS 33 A ILE 34 n 16 ILE 34 A TYR 35 n 17 TYR 35 A GLN 36 n 18 GLN 36 A ASP 37 n 19 ASP 37 A HIS 38 n 20 HIS 38 A PRO 39 n 21 PRO 39 A ILE 40 n 22 ILE 40 A SER 41 n 23 SER 41 A PHE 42 n 24 PHE 42 A TYR 43 n 25 TYR 43 A CYS 44 n 26 CYS 44 A GLY 45 n 27 GLY 45 A CYS 46 n 28 CYS 46 A ASP 47 n 29 ASP 47 A ILE 48 n 30 ILE 48 A GLU 49 n 31 GLU 49 A TRP 50 n 32 TRP 50 A GLN 51 n 33 GLN 51 A GLY 52 n 34 GLY 52 A LYS 53 n 35 LYS 53 A LYS 54 n 36 LYS 54 A GLY 55 n 37 GLY 55 A ILE 56 n 38 ILE 56 A PRO 57 n 39 PRO 57 A ASN 58 n 40 ASN 58 A LEU 59 n 41 LEU 59 A GLU 60 n 42 GLU 60 A THR 61 n 43 THR 61 A CYS 62 n 44 CYS 62 A GLY 63 n 45 GLY 63 A TYR 64 n 46 TYR 64 A GLN 65 n 47 GLN 65 A VAL 66 n 48 VAL 66 A ARG 67 n 49 ARG 67 A LYS 68 n 50 LYS 68 A GLN 69 n 51 GLN 69 A GLN 70 n 52 GLN 70 A THR 71 n 53 THR 71 A ARG 72 n 54 ARG 72 A ALA 73 n 55 ALA 73 A SER 74 n 56 SER 74 A ARG 75 n 57 ARG 75 A ILE 76 n 58 ILE 76 A GLU 77 n 59 GLU 77 A TRP 78 n 60 TRP 78 A GLU 79 n 61 GLU 79 A HIS 80 n 62 HIS 80 A VAL 81 n 63 VAL 81 A VAL 82 n 64 VAL 82 A PRO 83 n 65 PRO 83 A ALA 84 n 66 ALA 84 A TRP 85 n 67 TRP 85 A GLN 86 n 68 GLN 86 A PHE 87 n 69 PHE 87 A GLY 88 n 70 GLY 88 A HIS 89 n 71 HIS 89 A HIS 90 n 72 HIS 90 A ARG 91 n 73 ARG 91 A GLN 92 n 74 GLN 92 A CYS 93 n 75 CYS 93 A TRP 94 n 76 TRP 94 A GLN 95 n 77 GLN 95 A LYS 96 n 78 LYS 96 A GLY 97 n 79 GLY 97 A GLY 98 n 80 GLY 98 A ARG 99 n 81 ARG 99 A LYS 100 n 82 LYS 100 A ASN 101 n 83 ASN 101 A CYS 102 n 84 CYS 102 A SER 103 n 85 SER 103 A LYS 104 n 86 LYS 104 A ASN 105 n 87 ASN 105 A ASP 106 n 88 ASP 106 A GLN 107 n 89 GLN 107 A GLN 108 n 90 GLN 108 A PHE 109 n 91 PHE 109 A ARG 110 n 92 ARG 110 A LEU 111 n 93 LEU 111 A MSE 112 n 94 MSE 112 A GLU 113 n 95 GLU 113 A ALA 114 n 96 ALA 114 A ASP 115 n 97 ASP 115 A LEU 116 n 98 LEU 116 A HIS 117 n 99 HIS 117 A ASN 118 n 100 ASN 118 A LEU 119 n 101 LEU 119 A THR 120 n 102 THR 120 A PRO 121 n 103 PRO 121 A ALA 122 n 104 ALA 122 A ILE 123 n 105 ILE 123 A GLY 124 n 106 GLY 124 A GLU 125 n 107 GLU 125 A VAL 126 n 108 VAL 126 A ASN 127 n 109 ASN 127 A GLY 128 n 110 GLY 128 A ASP 129 n 111 ASP 129 A ARG 130 n 112 ARG 130 A SER 131 n 113 SER 131 A ASN 132 n 114 ASN 132 A PHE 133 n 115 PHE 133 A ASN 134 n 116 ASN 134 A PHE 135 n 117 PHE 135 A SER 136 n 118 SER 136 A GLN 137 n 119 GLN 137 A TRP 138 n 120 TRP 138 A ASN 139 n 121 ASN 139 A GLY 140 n 122 GLY 140 A VAL 141 n 123 VAL 141 A ASP 142 n 124 ASP 142 A GLY 143 n 125 GLY 143 A VAL 144 n 126 VAL 144 A SER 145 n 127 SER 145 A TYR 146 n 128 TYR 146 A GLY 147 n 129 GLY 147 A ARG 148 n 130 ARG 148 A CYS 149 n 131 CYS 149 A GLU 150 n 132 GLU 150 A MSE 151 n 133 MSE 151 A GLN 152 n 134 GLN 152 A VAL 153 n 135 VAL 153 A ASN 154 n 136 ASN 154 A PHE 155 n 137 PHE 155 A LYS 156 n 138 LYS 156 A GLN 157 n 139 GLN 157 A ARG 158 n 140 ARG 158 A LYS 159 n 141 LYS 159 A VAL 160 n 142 VAL 160 A MSE 161 n 143 MSE 161 A PRO 162 n 144 PRO 162 A PRO 163 n 145 PRO 163 A ASP 164 n 146 ASP 164 A ARG 165 n 147 ARG 165 A ALA 166 n 148 ALA 166 A ARG 167 n 149 ARG 167 A GLY 168 n 150 GLY 168 A SER 169 n 151 SER 169 A ILE 170 n 152 ILE 170 A ALA 171 n 153 ALA 171 A ARG 172 n 154 ARG 172 A THR 173 n 155 THR 173 A TYR 174 n 156 TYR 174 A LEU 175 n 157 LEU 175 A TYR 176 n 158 TYR 176 A MSE 177 n 159 MSE 177 A SER 178 n 160 SER 178 A GLN 179 n 161 GLN 179 A GLU 180 n 162 GLU 180 A TYR 181 n 163 TYR 181 A GLY 182 n 164 GLY 182 A PHE 183 n 165 PHE 183 A GLN 184 n 166 GLN 184 A LEU 185 n 167 LEU 185 A SER 186 n 168 SER 186 A LYS 187 n 169 LYS 187 A GLN 188 n 170 GLN 188 A GLN 189 n 171 GLN 189 A GLN 190 n 172 GLN 190 A GLN 191 n 173 GLN 191 A LEU 192 n 174 LEU 192 A MSE 193 n 175 MSE 193 A GLN 194 n 176 GLN 194 A ALA 195 n 177 ALA 195 A TRP 196 n 178 TRP 196 A ASN 197 n 179 ASN 197 A LYS 198 n 180 LYS 198 A SER 199 n 181 SER 199 A TYR 200 n 182 TYR 200 A PRO 201 n 183 PRO 201 A VAL 202 n 184 VAL 202 A ASP 203 n 185 ASP 203 A GLU 204 n 186 GLU 204 A TRP 205 n 187 TRP 205 A GLU 206 n 188 GLU 206 A CYS 207 n 189 CYS 207 A THR 208 n 190 THR 208 A ARG 209 n 191 ARG 209 A ASP 210 n 192 ASP 210 A ASP 211 n 193 ASP 211 A ARG 212 n 194 ARG 212 A ILE 213 n 195 ILE 213 A ALA 214 n 196 ALA 214 A LYS 215 n 197 LYS 215 A ILE 216 n 198 ILE 216 A GLN 217 n 199 GLN 217 A GLY 218 n 200 GLY 218 A ASN 219 n 201 ASN 219 A HIS 220 n 202 HIS 220 A ASN 221 n 203 ASN 221 A PRO 222 n 204 PRO 222 A PHE 223 n 205 PHE 223 A VAL 224 n 206 VAL 224 A GLN 225 n 207 GLN 225 A GLN 226 n 208 GLN 226 A SER 227 n 209 SER 227 A CYS 228 n 210 CYS 228 A author_defined_assembly 1 monomeric A GLU 79 A OE1 GLU 61 1_555 A MG 494 B MG MG 1_555 A ASN 127 A OD1 ASN 109 1_555 86.4 A GLU 79 A OE1 GLU 61 1_555 A MG 494 B MG MG 1_555 A HOH 323 C O HOH 1_555 96.1 A ASN 127 A OD1 ASN 109 1_555 A MG 494 B MG MG 1_555 A HOH 323 C O HOH 1_555 169.1 A GLU 79 A OE1 GLU 61 1_555 A MG 494 B MG MG 1_555 A HOH 336 C O HOH 1_555 172.2 A ASN 127 A OD1 ASN 109 1_555 A MG 494 B MG MG 1_555 A HOH 336 C O HOH 1_555 101.4 A HOH 323 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 336 C O HOH 1_555 76.1 A GLU 79 A OE1 GLU 61 1_555 A MG 494 B MG MG 1_555 A HOH 493 C O HOH 1_555 85.5 A ASN 127 A OD1 ASN 109 1_555 A MG 494 B MG MG 1_555 A HOH 493 C O HOH 1_555 86.7 A HOH 323 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 493 C O HOH 1_555 83.0 A HOH 336 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 493 C O HOH 1_555 94.5 A GLU 79 A OE1 GLU 61 1_555 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 109.3 A ASN 127 A OD1 ASN 109 1_555 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 99.0 A HOH 323 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 90.3 A HOH 336 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 70.1 A HOH 493 C O HOH 1_555 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 164.4 A MSE 112 SELENOMETHIONINE A MSE 94 MET A MSE 151 SELENOMETHIONINE A MSE 133 MET A MSE 161 SELENOMETHIONINE A MSE 143 MET A MSE 177 SELENOMETHIONINE A MSE 159 MET A MSE 193 SELENOMETHIONINE A MSE 175 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 51 A N GLN 33 A O LYS 54 A O LYS 36 A N GLU 79 A N GLU 61 A O THR 120 A O THR 102 A N ASN 134 A N ASN 116 A O VAL 160 A O VAL 142 A O MSE 161 A O MSE 143 A N GLN 152 A N GLN 134 A O VAL 153 A O VAL 135 A N VAL 144 A N VAL 126 1 A A SE CE MSE MSE 161 161 -0.392 0.059 1.950 1.558 N 1 A PRO 21 -48.41 154.12 1 A LYS 68 -166.28 -21.80 1 A SER 131 54.24 -125.75 1 A ASP 142 -152.62 43.69 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 24.3 -6.33 0.00 4.57 -3.15 0.00 9.48 0.269 0.010 0.186 2.30 26.55 713 16490 8803 8.3 98.4 RANDOM 283277.67 0.000 1 RESTRAINED THROUGHOUT 0 MAD Engh & Huber FLAT MODEL 48.3607 0.348624 0.36 0.22 5.00 0.24 0.15 2.30 26.55 194 1913 1 0 1718 0.012 1.3 22.4 0.80 1.32 1.50 1.93 2.00 2.25 2.00 3.06 2.50 0.262 0.023 0.185 2.44 133 1275 2424 6 9.4 95.8 15.6 2.3 40 1OUO 9512 9127 0 0 0.075 1 24.38 6.822 96 2.3 2.38 9.57 0.146 96 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing CNS Nuclease (E.C.3.1.-.-) Crystal structure of the periplasmic endonuclease Vvn 1 N N 2 N N 3 N N A SER 23 A SER 5 HELX_P A TYR 35 A TYR 17 1 1 13 A GLN 69 A GLN 51 HELX_P A SER 74 A SER 56 1 2 6 A ARG 91 A ARG 73 HELX_P A ASP 106 A ASP 88 1 3 16 A ASP 106 A ASP 88 HELX_P A ASP 115 A ASP 97 1 4 10 A GLY 124 A GLY 106 HELX_P A SER 131 A SER 113 1 5 8 A PRO 163 A PRO 145 HELX_P A TYR 181 A TYR 163 1 6 19 A SER 186 A SER 168 HELX_P A TYR 200 A TYR 182 1 7 15 A ASP 203 A ASP 185 HELX_P A GLY 218 A GLY 200 1 8 16 A ASN 221 A ASN 203 HELX_P A GLN 226 A GLN 208 1 9 6 disulf 2.041 A CYS 44 A SG CYS 26 1_555 A CYS 149 A SG CYS 131 1_555 disulf 2.024 A CYS 46 A SG CYS 28 1_555 A CYS 62 A SG CYS 44 1_555 disulf 2.036 A CYS 93 A SG CYS 75 1_555 A CYS 102 A SG CYS 84 1_555 disulf 2.035 A CYS 207 A SG CYS 189 1_555 A CYS 228 A SG CYS 210 1_555 metalc 1.806 A MG 494 B MG MG 1_555 A GLU 79 A OE1 GLU 61 1_555 metalc 1.986 A MG 494 B MG MG 1_555 A ASN 127 A OD1 ASN 109 1_555 covale 1.333 A LEU 111 A C LEU 93 1_555 A MSE 112 A N MSE 94 1_555 covale 1.322 A MSE 112 A C MSE 94 1_555 A GLU 113 A N GLU 95 1_555 covale 1.331 A GLU 150 A C GLU 132 1_555 A MSE 151 A N MSE 133 1_555 covale 1.327 A MSE 151 A C MSE 133 1_555 A GLN 152 A N GLN 134 1_555 covale 1.322 A VAL 160 A C VAL 142 1_555 A MSE 161 A N MSE 143 1_555 covale 1.340 A MSE 161 A C MSE 143 1_555 A PRO 162 A N PRO 144 1_555 covale 1.330 A TYR 176 A C TYR 158 1_555 A MSE 177 A N MSE 159 1_555 covale 1.327 A MSE 177 A C MSE 159 1_555 A SER 178 A N SER 160 1_555 covale 1.328 A LEU 192 A C LEU 174 1_555 A MSE 193 A N MSE 175 1_555 covale 1.331 A MSE 193 A C MSE 175 1_555 A GLN 194 A N GLN 176 1_555 metalc 2.289 A MG 494 B MG MG 1_555 A HOH 323 C O HOH 1_555 metalc 2.344 A MG 494 B MG MG 1_555 A HOH 336 C O HOH 1_555 metalc 1.876 A MG 494 B MG MG 1_555 A HOH 493 C O HOH 1_555 metalc 2.215 A MG 494 B MG MG 1_555 A HOH 492 C O HOH 1_555 HYDROLASE Non-specific endonuclease, beta-beta-alpha-metal motif, HYDROLASE Q8DCA6_VIBVU UNP 1 19 Q8DCA6 APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEHVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPQTELRGSIARTYLYMS QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSC 19 228 1OUO 19 228 Q8DCA6 A 1 1 210 1 MET MODIFIED RESIDUE MSE 112 1OUO A Q8DCA6 UNP 112 94 1 MET MODIFIED RESIDUE MSE 151 1OUO A Q8DCA6 UNP 151 133 1 MET MODIFIED RESIDUE MSE 161 1OUO A Q8DCA6 UNP 161 143 1 GLN SEE REMARK 999 PRO 163 1OUO A Q8DCA6 UNP 163 145 1 THR SEE REMARK 999 ASP 164 1OUO A Q8DCA6 UNP 164 146 1 GLU SEE REMARK 999 ARG 165 1OUO A Q8DCA6 UNP 165 147 1 LEU SEE REMARK 999 ALA 166 1OUO A Q8DCA6 UNP 166 148 1 MET MODIFIED RESIDUE MSE 177 1OUO A Q8DCA6 UNP 177 159 1 MET MODIFIED RESIDUE MSE 193 1OUO A Q8DCA6 UNP 193 175 2 2 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 48 A ILE 30 A GLN 51 A GLN 33 A LYS 54 A LYS 36 A PRO 57 A PRO 39 A ILE 76 A ILE 58 A HIS 80 A HIS 62 A LEU 119 A LEU 101 A ILE 123 A ILE 105 A ASN 134 A ASN 116 A PHE 135 A PHE 117 A LYS 159 A LYS 141 A MSE 161 A MSE 143 A CYS 149 A CYS 131 A ASN 154 A ASN 136 A VAL 144 A VAL 126 A TYR 146 A TYR 128 BINDING SITE FOR RESIDUE MG A 494 Software 6 A GLU 79 A GLU 61 6 1_555 A ASN 127 A ASN 109 6 1_555 A HOH 323 C HOH 6 1_555 A HOH 336 C HOH 6 1_555 A HOH 492 C HOH 6 1_555 A HOH 493 C HOH 6 1_555 4 P 1 21 1