0.018609 0.000000 0.002459 0.000000 0.019955 0.000000 0.000000 0.000000 0.011257 0.00000 0.00000 0.00000 Yuan, H.S. Li, C.-L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 97.53 90.00 53.74 50.11 89.61 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N O N 90 N P N 91 N O N 92 N O N 93 N O N 94 N C N 95 R C N 96 N O N 97 S C N 98 N O N 99 N C N 100 R C Y 101 N N Y 102 N C Y 103 N N Y 104 N C Y 105 N C N 106 N N Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 N C N 136 R C N 137 N N N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N C N 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C Y 171 N N Y 172 N C Y 173 N N Y 174 N C N 175 N C N 176 N O N 177 N N N 178 N C N 179 N N N 180 N N Y 181 N C N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N P N 198 N O N 199 N O N 200 N O N 201 N C N 202 R C N 203 N O N 204 S C N 205 N O N 206 N C N 207 R C N 208 N N N 209 N C N 210 N O N 211 N N N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N O N 240 N N N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N O N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 N C N 273 N C N 274 N O N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N N Y 288 N C Y 289 N C Y 290 N N N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N O N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 S C N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N C N 357 N N N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N S N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C N 422 N C N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C N 451 N O N 452 R C N 453 N O N 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N N N 466 S C N 467 N C N 468 N O N 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N N Y 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C Y 502 N C N 503 N O N 504 N O N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N N N 517 S C N 518 N C N 519 N O N 520 N C N 521 N C N 522 N C N 523 N O N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing UK Embo J. EMJODG 0897 0261-4189 22 4014 4025 10.1093/emboj/cdg377 12881435 DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site. 2003 10.2210/pdb1oup/pdb pdb_00001oup 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-11-25 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9065 1.0 BL12B2 SPring-8 0.9065 SYNCHROTRON SPRING-8 BEAMLINE BL12B2 2427.605 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' 3 syn polymer 1809.218 5'-D(*GP*CP*GP*AP*TP*C)-3' 1 syn polymer 573.430 5'-D(P*GP*C)-3' 1 syn polymer 24751.709 Nuclease 3.1.-.- residues 19-231 H80A 2 man polymer 40.078 CALCIUM ION 2 syn non-polymer 18.015 water 328 nat water VVN Nuclease no no (DG)(DC)(DG)(DA)(DT)(DC)(DG)(DC) GCGATCGC C,D,F polydeoxyribonucleotide no no (DG)(DC)(DG)(DA)(DT)(DC) GCGATC E polydeoxyribonucleotide no no (DG)(DC) GC G polydeoxyribonucleotide no no APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMS QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMS QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Vibrio Escherichia sample 672 Vibrio vulnificus 562 Escherichia coli B834(DE3) plasmid pTYB2 1 1.93 35.80 VAPOR DIFFUSION, HANGING DROP 7.3 PEG3350, Calcium acetate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 PEG3350 1 Calcium acetate 1 PEG3350 2 Calcium acetate 2 -13.359 1 19 C 1 D 16 -1.667 C_DG1:DC16_D 1 -7.754 -0.919 -0.336 -0.542 -15.079 1 19 C 2 D 15 -2.470 C_DC2:DG15_D 2 -6.718 0.124 0.073 -0.043 -4.115 1 19 C 3 D 14 -6.153 C_DG3:DC14_D 3 -2.428 -0.098 -0.160 -0.227 -10.044 1 20 C 4 D 13 -6.664 C_DA4:DT13_D 4 2.314 1.031 -0.320 0.109 -2.177 1 20 C 5 D 12 3.173 C_DT5:DA12_D 5 0.703 -0.465 -0.044 -0.236 6.874 1 19 C 6 D 11 1.198 C_DC6:DG11_D 6 -9.518 -0.226 0.112 0.113 16.034 1 19 C 7 D 10 -5.536 C_DG7:DC10_D 7 -3.151 -0.612 0.252 -0.112 16.168 1 19 C 8 D 9 -6.585 C_DC8:DG9_D 8 -6.988 -0.395 -0.980 0.009 8.358 1 19 E 1 F 16 -0.499 E_DG1:DC16_F 9 2.510 -0.330 -0.081 -0.501 -3.067 1 19 E 2 F 15 3.349 E_DC2:DG15_F 10 -6.746 0.860 -0.449 -0.421 0.400 1 19 E 3 F 14 -3.088 E_DG3:DC14_F 11 -9.935 0.502 -0.157 -0.197 7.740 1 20 E 4 F 13 -12.943 E_DA4:DT13_F 12 -4.575 -0.546 -0.305 -0.238 22.654 1 20 E 5 F 12 -0.499 E_DT5:DA12_F 13 -10.048 0.209 -0.860 -0.248 -15.558 1 19 E 6 F 11 -0.208 E_DC6:DG11_F 14 -9.563 -1.111 0.253 -0.208 -18.074 1 19 G 7 F 10 0.221 G_DG7:DC10_F 15 -1.156 -0.823 -0.491 -0.071 -2.849 1 19 G 8 F 9 -11.786 G_DC8:DG9_F 16 7.462 -0.485 -0.139 -0.138 3.631 43.022 C C 1 2 -10.336 D D 16 15 3.536 -7.544 -1.092 -0.780 CC_DG1DC2:DG15DC16_DD 1 -0.582 0.798 42.383 -0.241 1.425 3.212 31.039 C C 2 3 14.246 D D 15 14 3.083 7.550 0.080 0.910 CC_DC2DG3:DC14DG15_DD 2 0.352 -0.663 30.126 0.283 -0.083 3.163 40.295 C C 3 4 25.577 D D 14 13 3.572 17.103 0.064 -0.233 CC_DG3DA4:DT13DC14_DD 3 0.600 -0.897 36.618 -2.433 -0.019 3.130 24.221 C C 4 5 -0.165 D D 13 12 3.134 -0.069 1.294 -0.655 CC_DA4DT5:DA12DT13_DD 4 -0.111 0.265 24.221 -1.539 -3.118 2.862 30.673 C C 5 6 19.469 D D 12 11 3.249 10.097 0.084 -0.636 CC_DT5DC6:DG11DA12_DD 5 3.141 -6.057 28.834 -3.120 0.438 3.232 33.943 C C 6 7 9.515 D D 11 10 3.217 5.531 -0.599 0.283 CC_DC6DG7:DC10DG11_DD 6 -0.622 1.070 33.496 -0.395 0.927 3.249 34.441 C C 7 8 8.196 D D 10 9 3.358 4.780 0.527 -0.719 CC_DG7DC8:DG9DC10_DD 7 9.322 -15.983 32.855 -1.985 0.612 3.535 39.155 E E 1 2 5.367 F F 16 15 3.716 3.590 -0.780 -1.257 EE_DG1DC2:DG15DC16_FF 8 2.538 -3.794 38.917 -2.353 1.501 3.275 30.527 E E 2 3 30.904 F F 15 14 3.446 15.537 -0.168 0.574 EE_DC2DG3:DC14DG15_FF 9 -1.177 2.341 26.333 -2.331 0.059 2.861 25.913 E E 3 4 17.972 F F 14 13 3.112 7.928 -0.214 -0.376 EE_DG3DA4:DT13DC14_FF 10 -1.729 3.920 24.631 -2.896 0.029 2.857 34.565 E E 4 5 16.828 F F 13 12 3.032 9.859 0.853 -0.391 EE_DA4DT5:DA12DT13_FF 11 2.503 -4.272 33.078 -2.062 -1.079 4.336 30.200 E E 5 6 3.543 F F 12 11 4.467 1.835 -0.149 -1.252 EE_DT5DC6:DG11DA12_FF 12 -5.691 10.993 29.616 -2.909 -1.286 2.640 33.904 E G 6 7 25.392 F F 11 10 3.334 14.326 0.543 -1.058 EG_DC6DG7:DC10DG11_FF 13 4.265 -7.559 30.519 -4.035 -0.270 3.060 32.713 G G 7 8 2.762 F F 10 9 3.112 1.555 -0.725 -1.200 GG_DG7DC8:DG9DC10_FF 14 -0.321 0.571 32.676 -2.384 1.236 refine_ls_shell database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Refinement description Database references Derived calculations Data collection Refinement description 1 0 2003-08-05 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 1 4 2021-11-10 1 5 2024-04-03 _refine_ls_shell.number_reflns_obs _refine_ls_shell.percent_reflns_obs _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1OUO contains the same protein complexed with MG RCSB Y PDBJ 2003-03-25 REL REL CA CALCIUM ION HOH water SeMet-Vvn Other experimental model CA 300 5 CA CA 300 A CA 300 5 CA CA 300 B HOH 461 6 HOH HOH 461 C HOH 463 6 HOH HOH 463 C HOH 488 6 HOH HOH 488 C HOH 499 6 HOH HOH 499 C HOH 595 6 HOH HOH 595 C HOH 600 6 HOH HOH 600 C HOH 601 6 HOH HOH 601 C HOH 713 6 HOH HOH 713 C HOH 725 6 HOH HOH 725 C HOH 491 6 HOH HOH 491 D HOH 494 6 HOH HOH 494 D HOH 573 6 HOH HOH 573 D HOH 714 6 HOH HOH 714 D HOH 527 6 HOH HOH 527 E HOH 529 6 HOH HOH 529 E HOH 715 6 HOH HOH 715 E HOH 578 6 HOH HOH 578 G HOH 585 6 HOH HOH 585 G HOH 720 6 HOH HOH 720 G HOH 476 6 HOH HOH 476 F HOH 525 6 HOH HOH 525 F HOH 526 6 HOH HOH 526 F HOH 528 6 HOH HOH 528 F HOH 587 6 HOH HOH 587 F HOH 681 6 HOH HOH 681 F HOH 716 6 HOH HOH 716 F HOH 717 6 HOH HOH 717 F HOH 400 6 HOH HOH 400 A HOH 401 6 HOH HOH 401 A HOH 402 6 HOH HOH 402 A HOH 404 6 HOH HOH 404 A HOH 406 6 HOH HOH 406 A HOH 407 6 HOH HOH 407 A HOH 408 6 HOH HOH 408 A HOH 409 6 HOH HOH 409 A HOH 410 6 HOH HOH 410 A HOH 413 6 HOH HOH 413 A HOH 414 6 HOH HOH 414 A HOH 415 6 HOH HOH 415 A HOH 419 6 HOH HOH 419 A HOH 420 6 HOH HOH 420 A HOH 421 6 HOH HOH 421 A HOH 422 6 HOH HOH 422 A HOH 426 6 HOH HOH 426 A HOH 428 6 HOH HOH 428 A HOH 431 6 HOH HOH 431 A HOH 432 6 HOH HOH 432 A HOH 435 6 HOH HOH 435 A HOH 436 6 HOH HOH 436 A HOH 437 6 HOH HOH 437 A HOH 439 6 HOH HOH 439 A HOH 444 6 HOH HOH 444 A HOH 445 6 HOH HOH 445 A HOH 446 6 HOH HOH 446 A HOH 447 6 HOH HOH 447 A HOH 448 6 HOH HOH 448 A HOH 449 6 HOH HOH 449 A HOH 450 6 HOH HOH 450 A HOH 451 6 HOH HOH 451 A HOH 452 6 HOH HOH 452 A HOH 453 6 HOH HOH 453 A HOH 454 6 HOH HOH 454 A HOH 456 6 HOH HOH 456 A HOH 457 6 HOH HOH 457 A HOH 459 6 HOH HOH 459 A HOH 462 6 HOH HOH 462 A HOH 464 6 HOH HOH 464 A HOH 465 6 HOH HOH 465 A HOH 466 6 HOH HOH 466 A HOH 469 6 HOH HOH 469 A HOH 471 6 HOH HOH 471 A HOH 472 6 HOH HOH 472 A HOH 473 6 HOH HOH 473 A HOH 474 6 HOH HOH 474 A HOH 475 6 HOH HOH 475 A HOH 479 6 HOH HOH 479 A HOH 480 6 HOH HOH 480 A HOH 481 6 HOH HOH 481 A HOH 483 6 HOH HOH 483 A HOH 485 6 HOH HOH 485 A HOH 486 6 HOH HOH 486 A HOH 487 6 HOH HOH 487 A HOH 489 6 HOH HOH 489 A HOH 490 6 HOH HOH 490 A HOH 492 6 HOH HOH 492 A HOH 493 6 HOH HOH 493 A HOH 495 6 HOH HOH 495 A HOH 496 6 HOH HOH 496 A HOH 497 6 HOH HOH 497 A HOH 500 6 HOH HOH 500 A HOH 501 6 HOH HOH 501 A HOH 502 6 HOH HOH 502 A HOH 503 6 HOH HOH 503 A HOH 505 6 HOH HOH 505 A HOH 506 6 HOH HOH 506 A HOH 507 6 HOH HOH 507 A HOH 510 6 HOH HOH 510 A HOH 513 6 HOH HOH 513 A HOH 515 6 HOH HOH 515 A HOH 516 6 HOH HOH 516 A HOH 517 6 HOH HOH 517 A HOH 518 6 HOH HOH 518 A HOH 519 6 HOH HOH 519 A HOH 520 6 HOH HOH 520 A HOH 521 6 HOH HOH 521 A HOH 522 6 HOH HOH 522 A HOH 523 6 HOH HOH 523 A HOH 524 6 HOH HOH 524 A HOH 538 6 HOH HOH 538 A HOH 539 6 HOH HOH 539 A HOH 540 6 HOH HOH 540 A HOH 541 6 HOH HOH 541 A HOH 542 6 HOH HOH 542 A HOH 543 6 HOH HOH 543 A HOH 544 6 HOH HOH 544 A HOH 545 6 HOH HOH 545 A HOH 546 6 HOH HOH 546 A HOH 547 6 HOH HOH 547 A HOH 548 6 HOH HOH 548 A HOH 549 6 HOH HOH 549 A HOH 550 6 HOH HOH 550 A HOH 551 6 HOH HOH 551 A HOH 552 6 HOH HOH 552 A HOH 553 6 HOH HOH 553 A HOH 554 6 HOH HOH 554 A HOH 555 6 HOH HOH 555 A HOH 556 6 HOH HOH 556 A HOH 557 6 HOH HOH 557 A HOH 558 6 HOH HOH 558 A HOH 560 6 HOH HOH 560 A HOH 561 6 HOH HOH 561 A HOH 562 6 HOH HOH 562 A HOH 563 6 HOH HOH 563 A HOH 569 6 HOH HOH 569 A HOH 570 6 HOH HOH 570 A HOH 571 6 HOH HOH 571 A HOH 572 6 HOH HOH 572 A HOH 574 6 HOH HOH 574 A HOH 575 6 HOH HOH 575 A HOH 576 6 HOH HOH 576 A HOH 582 6 HOH HOH 582 A HOH 583 6 HOH HOH 583 A HOH 584 6 HOH HOH 584 A HOH 588 6 HOH HOH 588 A HOH 591 6 HOH HOH 591 A HOH 592 6 HOH HOH 592 A HOH 593 6 HOH HOH 593 A HOH 594 6 HOH HOH 594 A HOH 596 6 HOH HOH 596 A HOH 597 6 HOH HOH 597 A HOH 609 6 HOH HOH 609 A HOH 610 6 HOH HOH 610 A HOH 611 6 HOH HOH 611 A HOH 612 6 HOH HOH 612 A HOH 613 6 HOH HOH 613 A HOH 614 6 HOH HOH 614 A HOH 615 6 HOH HOH 615 A HOH 616 6 HOH HOH 616 A HOH 617 6 HOH HOH 617 A HOH 618 6 HOH HOH 618 A HOH 619 6 HOH HOH 619 A HOH 620 6 HOH HOH 620 A HOH 623 6 HOH HOH 623 A HOH 633 6 HOH HOH 633 A HOH 634 6 HOH HOH 634 A HOH 635 6 HOH HOH 635 A HOH 636 6 HOH HOH 636 A HOH 637 6 HOH HOH 637 A HOH 638 6 HOH HOH 638 A HOH 639 6 HOH HOH 639 A HOH 643 6 HOH HOH 643 A HOH 644 6 HOH HOH 644 A HOH 646 6 HOH HOH 646 A HOH 647 6 HOH HOH 647 A HOH 648 6 HOH HOH 648 A HOH 649 6 HOH HOH 649 A HOH 650 6 HOH HOH 650 A HOH 652 6 HOH HOH 652 A HOH 653 6 HOH HOH 653 A HOH 654 6 HOH HOH 654 A HOH 655 6 HOH HOH 655 A HOH 656 6 HOH HOH 656 A HOH 657 6 HOH HOH 657 A HOH 659 6 HOH HOH 659 A HOH 660 6 HOH HOH 660 A HOH 661 6 HOH HOH 661 A HOH 663 6 HOH HOH 663 A HOH 664 6 HOH HOH 664 A HOH 665 6 HOH HOH 665 A HOH 666 6 HOH HOH 666 A HOH 667 6 HOH HOH 667 A HOH 668 6 HOH HOH 668 A HOH 669 6 HOH HOH 669 A HOH 670 6 HOH HOH 670 A HOH 671 6 HOH HOH 671 A HOH 672 6 HOH HOH 672 A HOH 675 6 HOH HOH 675 A HOH 676 6 HOH HOH 676 A HOH 677 6 HOH HOH 677 A HOH 678 6 HOH HOH 678 A HOH 679 6 HOH HOH 679 A HOH 680 6 HOH HOH 680 A HOH 682 6 HOH HOH 682 A HOH 683 6 HOH HOH 683 A HOH 685 6 HOH HOH 685 A HOH 686 6 HOH HOH 686 A HOH 687 6 HOH HOH 687 A HOH 688 6 HOH HOH 688 A HOH 689 6 HOH HOH 689 A HOH 691 6 HOH HOH 691 A HOH 692 6 HOH HOH 692 A HOH 693 6 HOH HOH 693 A HOH 694 6 HOH HOH 694 A HOH 719 6 HOH HOH 719 A HOH 721 6 HOH HOH 721 A HOH 403 6 HOH HOH 403 B HOH 405 6 HOH HOH 405 B HOH 411 6 HOH HOH 411 B HOH 412 6 HOH HOH 412 B HOH 416 6 HOH HOH 416 B HOH 417 6 HOH HOH 417 B HOH 418 6 HOH HOH 418 B HOH 423 6 HOH HOH 423 B HOH 424 6 HOH HOH 424 B HOH 425 6 HOH HOH 425 B HOH 427 6 HOH HOH 427 B HOH 429 6 HOH HOH 429 B HOH 430 6 HOH HOH 430 B HOH 433 6 HOH HOH 433 B HOH 434 6 HOH HOH 434 B HOH 438 6 HOH HOH 438 B HOH 440 6 HOH HOH 440 B HOH 441 6 HOH HOH 441 B HOH 442 6 HOH HOH 442 B HOH 443 6 HOH HOH 443 B HOH 455 6 HOH HOH 455 B HOH 458 6 HOH HOH 458 B HOH 460 6 HOH HOH 460 B HOH 467 6 HOH HOH 467 B HOH 468 6 HOH HOH 468 B HOH 470 6 HOH HOH 470 B HOH 477 6 HOH HOH 477 B HOH 478 6 HOH HOH 478 B HOH 482 6 HOH HOH 482 B HOH 484 6 HOH HOH 484 B HOH 498 6 HOH HOH 498 B HOH 504 6 HOH HOH 504 B HOH 508 6 HOH HOH 508 B HOH 509 6 HOH HOH 509 B HOH 511 6 HOH HOH 511 B HOH 512 6 HOH HOH 512 B HOH 514 6 HOH HOH 514 B HOH 530 6 HOH HOH 530 B HOH 531 6 HOH HOH 531 B HOH 532 6 HOH HOH 532 B HOH 533 6 HOH HOH 533 B HOH 534 6 HOH HOH 534 B HOH 535 6 HOH HOH 535 B HOH 536 6 HOH HOH 536 B HOH 537 6 HOH HOH 537 B HOH 559 6 HOH HOH 559 B HOH 564 6 HOH HOH 564 B HOH 565 6 HOH HOH 565 B HOH 566 6 HOH HOH 566 B HOH 567 6 HOH HOH 567 B HOH 568 6 HOH HOH 568 B HOH 577 6 HOH HOH 577 B HOH 579 6 HOH HOH 579 B HOH 580 6 HOH HOH 580 B HOH 581 6 HOH HOH 581 B HOH 586 6 HOH HOH 586 B HOH 589 6 HOH HOH 589 B HOH 590 6 HOH HOH 590 B HOH 598 6 HOH HOH 598 B HOH 599 6 HOH HOH 599 B HOH 602 6 HOH HOH 602 B HOH 603 6 HOH HOH 603 B HOH 604 6 HOH HOH 604 B HOH 605 6 HOH HOH 605 B HOH 606 6 HOH HOH 606 B HOH 607 6 HOH HOH 607 B HOH 608 6 HOH HOH 608 B HOH 621 6 HOH HOH 621 B HOH 622 6 HOH HOH 622 B HOH 624 6 HOH HOH 624 B HOH 625 6 HOH HOH 625 B HOH 626 6 HOH HOH 626 B HOH 627 6 HOH HOH 627 B HOH 628 6 HOH HOH 628 B HOH 629 6 HOH HOH 629 B HOH 630 6 HOH HOH 630 B HOH 631 6 HOH HOH 631 B HOH 632 6 HOH HOH 632 B HOH 640 6 HOH HOH 640 B HOH 641 6 HOH HOH 641 B HOH 642 6 HOH HOH 642 B HOH 645 6 HOH HOH 645 B HOH 651 6 HOH HOH 651 B HOH 658 6 HOH HOH 658 B HOH 662 6 HOH HOH 662 B HOH 673 6 HOH HOH 673 B HOH 674 6 HOH HOH 674 B HOH 684 6 HOH HOH 684 B HOH 690 6 HOH HOH 690 B HOH 695 6 HOH HOH 695 B HOH 696 6 HOH HOH 696 B HOH 697 6 HOH HOH 697 B HOH 698 6 HOH HOH 698 B HOH 699 6 HOH HOH 699 B HOH 700 6 HOH HOH 700 B HOH 701 6 HOH HOH 701 B HOH 702 6 HOH HOH 702 B HOH 703 6 HOH HOH 703 B HOH 704 6 HOH HOH 704 B HOH 705 6 HOH HOH 705 B HOH 706 6 HOH HOH 706 B HOH 707 6 HOH HOH 707 B HOH 708 6 HOH HOH 708 B HOH 709 6 HOH HOH 709 B HOH 710 6 HOH HOH 710 B HOH 711 6 HOH HOH 711 B HOH 712 6 HOH HOH 712 B HOH 718 6 HOH HOH 718 B HOH 722 6 HOH HOH 722 B HOH 723 6 HOH HOH 723 B HOH 724 6 HOH HOH 724 B HOH 726 6 HOH HOH 726 B HOH 727 6 HOH HOH 727 B G 1 n 1 DG 1 C C 2 n 2 DC 2 C G 3 n 3 DG 3 C A 4 n 4 DA 4 C T 5 n 5 DT 5 C C 6 n 6 DC 6 C G 7 n 7 DG 7 C C 8 n 8 DC 8 C G 9 n 1 DG 9 D C 10 n 2 DC 10 D G 11 n 3 DG 11 D A 12 n 4 DA 12 D T 13 n 5 DT 13 D C 14 n 6 DC 14 D G 15 n 7 DG 15 D C 16 n 8 DC 16 D G 1 n 1 DG 1 E C 2 n 2 DC 2 E G 3 n 3 DG 3 E A 4 n 4 DA 4 E T 5 n 5 DT 5 E C 6 n 6 DC 6 E G 7 n 1 DG 7 G C 8 n 2 DC 8 G G 9 n 1 DG 9 F C 10 n 2 DC 10 F G 11 n 3 DG 11 F A 12 n 4 DA 12 F T 13 n 5 DT 13 F C 14 n 6 DC 14 F G 15 n 7 DG 15 F C 16 n 8 DC 16 F ALA 19 n 1 ALA 19 A PRO 20 n 2 PRO 20 A PRO 21 n 3 PRO 21 A SER 22 n 4 SER 22 A SER 23 n 5 SER 23 A PHE 24 n 6 PHE 24 A SER 25 n 7 SER 25 A ALA 26 n 8 ALA 26 A ALA 27 n 9 ALA 27 A LYS 28 n 10 LYS 28 A GLN 29 n 11 GLN 29 A GLN 30 n 12 GLN 30 A ALA 31 n 13 ALA 31 A VAL 32 n 14 VAL 32 A LYS 33 n 15 LYS 33 A ILE 34 n 16 ILE 34 A TYR 35 n 17 TYR 35 A GLN 36 n 18 GLN 36 A ASP 37 n 19 ASP 37 A HIS 38 n 20 HIS 38 A PRO 39 n 21 PRO 39 A ILE 40 n 22 ILE 40 A SER 41 n 23 SER 41 A PHE 42 n 24 PHE 42 A TYR 43 n 25 TYR 43 A CYS 44 n 26 CYS 44 A GLY 45 n 27 GLY 45 A CYS 46 n 28 CYS 46 A ASP 47 n 29 ASP 47 A ILE 48 n 30 ILE 48 A GLU 49 n 31 GLU 49 A TRP 50 n 32 TRP 50 A GLN 51 n 33 GLN 51 A GLY 52 n 34 GLY 52 A LYS 53 n 35 LYS 53 A LYS 54 n 36 LYS 54 A GLY 55 n 37 GLY 55 A ILE 56 n 38 ILE 56 A PRO 57 n 39 PRO 57 A ASN 58 n 40 ASN 58 A LEU 59 n 41 LEU 59 A GLU 60 n 42 GLU 60 A THR 61 n 43 THR 61 A CYS 62 n 44 CYS 62 A GLY 63 n 45 GLY 63 A TYR 64 n 46 TYR 64 A GLN 65 n 47 GLN 65 A VAL 66 n 48 VAL 66 A ARG 67 n 49 ARG 67 A LYS 68 n 50 LYS 68 A GLN 69 n 51 GLN 69 A GLN 70 n 52 GLN 70 A THR 71 n 53 THR 71 A ARG 72 n 54 ARG 72 A ALA 73 n 55 ALA 73 A SER 74 n 56 SER 74 A ARG 75 n 57 ARG 75 A ILE 76 n 58 ILE 76 A GLU 77 n 59 GLU 77 A TRP 78 n 60 TRP 78 A GLU 79 n 61 GLU 79 A ALA 80 n 62 ALA 80 A VAL 81 n 63 VAL 81 A VAL 82 n 64 VAL 82 A PRO 83 n 65 PRO 83 A ALA 84 n 66 ALA 84 A TRP 85 n 67 TRP 85 A GLN 86 n 68 GLN 86 A PHE 87 n 69 PHE 87 A GLY 88 n 70 GLY 88 A HIS 89 n 71 HIS 89 A HIS 90 n 72 HIS 90 A ARG 91 n 73 ARG 91 A GLN 92 n 74 GLN 92 A CYS 93 n 75 CYS 93 A TRP 94 n 76 TRP 94 A GLN 95 n 77 GLN 95 A LYS 96 n 78 LYS 96 A GLY 97 n 79 GLY 97 A GLY 98 n 80 GLY 98 A ARG 99 n 81 ARG 99 A LYS 100 n 82 LYS 100 A ASN 101 n 83 ASN 101 A CYS 102 n 84 CYS 102 A SER 103 n 85 SER 103 A LYS 104 n 86 LYS 104 A ASN 105 n 87 ASN 105 A ASP 106 n 88 ASP 106 A GLN 107 n 89 GLN 107 A GLN 108 n 90 GLN 108 A PHE 109 n 91 PHE 109 A ARG 110 n 92 ARG 110 A LEU 111 n 93 LEU 111 A MET 112 n 94 MET 112 A GLU 113 n 95 GLU 113 A ALA 114 n 96 ALA 114 A ASP 115 n 97 ASP 115 A LEU 116 n 98 LEU 116 A HIS 117 n 99 HIS 117 A ASN 118 n 100 ASN 118 A LEU 119 n 101 LEU 119 A THR 120 n 102 THR 120 A PRO 121 n 103 PRO 121 A ALA 122 n 104 ALA 122 A ILE 123 n 105 ILE 123 A GLY 124 n 106 GLY 124 A GLU 125 n 107 GLU 125 A VAL 126 n 108 VAL 126 A ASN 127 n 109 ASN 127 A GLY 128 n 110 GLY 128 A ASP 129 n 111 ASP 129 A ARG 130 n 112 ARG 130 A SER 131 n 113 SER 131 A ASN 132 n 114 ASN 132 A PHE 133 n 115 PHE 133 A ASN 134 n 116 ASN 134 A PHE 135 n 117 PHE 135 A SER 136 n 118 SER 136 A GLN 137 n 119 GLN 137 A TRP 138 n 120 TRP 138 A ASN 139 n 121 ASN 139 A GLY 140 n 122 GLY 140 A VAL 141 n 123 VAL 141 A ASP 142 n 124 ASP 142 A GLY 143 n 125 GLY 143 A VAL 144 n 126 VAL 144 A SER 145 n 127 SER 145 A TYR 146 n 128 TYR 146 A GLY 147 n 129 GLY 147 A ARG 148 n 130 ARG 148 A CYS 149 n 131 CYS 149 A GLU 150 n 132 GLU 150 A MET 151 n 133 MET 151 A GLN 152 n 134 GLN 152 A VAL 153 n 135 VAL 153 A ASN 154 n 136 ASN 154 A PHE 155 n 137 PHE 155 A LYS 156 n 138 LYS 156 A GLN 157 n 139 GLN 157 A ARG 158 n 140 ARG 158 A LYS 159 n 141 LYS 159 A VAL 160 n 142 VAL 160 A MET 161 n 143 MET 161 A PRO 162 n 144 PRO 162 A PRO 163 n 145 PRO 163 A ASP 164 n 146 ASP 164 A ARG 165 n 147 ARG 165 A ALA 166 n 148 ALA 166 A ARG 167 n 149 ARG 167 A GLY 168 n 150 GLY 168 A SER 169 n 151 SER 169 A ILE 170 n 152 ILE 170 A ALA 171 n 153 ALA 171 A ARG 172 n 154 ARG 172 A THR 173 n 155 THR 173 A TYR 174 n 156 TYR 174 A LEU 175 n 157 LEU 175 A TYR 176 n 158 TYR 176 A MET 177 n 159 MET 177 A SER 178 n 160 SER 178 A GLN 179 n 161 GLN 179 A GLU 180 n 162 GLU 180 A TYR 181 n 163 TYR 181 A GLY 182 n 164 GLY 182 A PHE 183 n 165 PHE 183 A GLN 184 n 166 GLN 184 A LEU 185 n 167 LEU 185 A SER 186 n 168 SER 186 A LYS 187 n 169 LYS 187 A GLN 188 n 170 GLN 188 A GLN 189 n 171 GLN 189 A GLN 190 n 172 GLN 190 A GLN 191 n 173 GLN 191 A LEU 192 n 174 LEU 192 A MET 193 n 175 MET 193 A GLN 194 n 176 GLN 194 A ALA 195 n 177 ALA 195 A TRP 196 n 178 TRP 196 A ASN 197 n 179 ASN 197 A LYS 198 n 180 LYS 198 A SER 199 n 181 SER 199 A TYR 200 n 182 TYR 200 A PRO 201 n 183 PRO 201 A VAL 202 n 184 VAL 202 A ASP 203 n 185 ASP 203 A GLU 204 n 186 GLU 204 A TRP 205 n 187 TRP 205 A GLU 206 n 188 GLU 206 A CYS 207 n 189 CYS 207 A THR 208 n 190 THR 208 A ARG 209 n 191 ARG 209 A ASP 210 n 192 ASP 210 A ASP 211 n 193 ASP 211 A ARG 212 n 194 ARG 212 A ILE 213 n 195 ILE 213 A ALA 214 n 196 ALA 214 A LYS 215 n 197 LYS 215 A ILE 216 n 198 ILE 216 A GLN 217 n 199 GLN 217 A GLY 218 n 200 GLY 218 A ASN 219 n 201 ASN 219 A HIS 220 n 202 HIS 220 A ASN 221 n 203 ASN 221 A PRO 222 n 204 PRO 222 A PHE 223 n 205 PHE 223 A VAL 224 n 206 VAL 224 A GLN 225 n 207 GLN 225 A GLN 226 n 208 GLN 226 A SER 227 n 209 SER 227 A CYS 228 n 210 CYS 228 A GLN 229 n 211 GLN 229 A THR 230 n 212 THR 230 A GLN 231 n 213 GLN 231 A ALA 19 n 1 ALA 19 B PRO 20 n 2 PRO 20 B PRO 21 n 3 PRO 21 B SER 22 n 4 SER 22 B SER 23 n 5 SER 23 B PHE 24 n 6 PHE 24 B SER 25 n 7 SER 25 B ALA 26 n 8 ALA 26 B ALA 27 n 9 ALA 27 B LYS 28 n 10 LYS 28 B GLN 29 n 11 GLN 29 B GLN 30 n 12 GLN 30 B ALA 31 n 13 ALA 31 B VAL 32 n 14 VAL 32 B LYS 33 n 15 LYS 33 B ILE 34 n 16 ILE 34 B TYR 35 n 17 TYR 35 B GLN 36 n 18 GLN 36 B ASP 37 n 19 ASP 37 B HIS 38 n 20 HIS 38 B PRO 39 n 21 PRO 39 B ILE 40 n 22 ILE 40 B SER 41 n 23 SER 41 B PHE 42 n 24 PHE 42 B TYR 43 n 25 TYR 43 B CYS 44 n 26 CYS 44 B GLY 45 n 27 GLY 45 B CYS 46 n 28 CYS 46 B ASP 47 n 29 ASP 47 B ILE 48 n 30 ILE 48 B GLU 49 n 31 GLU 49 B TRP 50 n 32 TRP 50 B GLN 51 n 33 GLN 51 B GLY 52 n 34 GLY 52 B LYS 53 n 35 LYS 53 B LYS 54 n 36 LYS 54 B GLY 55 n 37 GLY 55 B ILE 56 n 38 ILE 56 B PRO 57 n 39 PRO 57 B ASN 58 n 40 ASN 58 B LEU 59 n 41 LEU 59 B GLU 60 n 42 GLU 60 B THR 61 n 43 THR 61 B CYS 62 n 44 CYS 62 B GLY 63 n 45 GLY 63 B TYR 64 n 46 TYR 64 B GLN 65 n 47 GLN 65 B VAL 66 n 48 VAL 66 B ARG 67 n 49 ARG 67 B LYS 68 n 50 LYS 68 B GLN 69 n 51 GLN 69 B GLN 70 n 52 GLN 70 B THR 71 n 53 THR 71 B ARG 72 n 54 ARG 72 B ALA 73 n 55 ALA 73 B SER 74 n 56 SER 74 B ARG 75 n 57 ARG 75 B ILE 76 n 58 ILE 76 B GLU 77 n 59 GLU 77 B TRP 78 n 60 TRP 78 B GLU 79 n 61 GLU 79 B ALA 80 n 62 ALA 80 B VAL 81 n 63 VAL 81 B VAL 82 n 64 VAL 82 B PRO 83 n 65 PRO 83 B ALA 84 n 66 ALA 84 B TRP 85 n 67 TRP 85 B GLN 86 n 68 GLN 86 B PHE 87 n 69 PHE 87 B GLY 88 n 70 GLY 88 B HIS 89 n 71 HIS 89 B HIS 90 n 72 HIS 90 B ARG 91 n 73 ARG 91 B GLN 92 n 74 GLN 92 B CYS 93 n 75 CYS 93 B TRP 94 n 76 TRP 94 B GLN 95 n 77 GLN 95 B LYS 96 n 78 LYS 96 B GLY 97 n 79 GLY 97 B GLY 98 n 80 GLY 98 B ARG 99 n 81 ARG 99 B LYS 100 n 82 LYS 100 B ASN 101 n 83 ASN 101 B CYS 102 n 84 CYS 102 B SER 103 n 85 SER 103 B LYS 104 n 86 LYS 104 B ASN 105 n 87 ASN 105 B ASP 106 n 88 ASP 106 B GLN 107 n 89 GLN 107 B GLN 108 n 90 GLN 108 B PHE 109 n 91 PHE 109 B ARG 110 n 92 ARG 110 B LEU 111 n 93 LEU 111 B MET 112 n 94 MET 112 B GLU 113 n 95 GLU 113 B ALA 114 n 96 ALA 114 B ASP 115 n 97 ASP 115 B LEU 116 n 98 LEU 116 B HIS 117 n 99 HIS 117 B ASN 118 n 100 ASN 118 B LEU 119 n 101 LEU 119 B THR 120 n 102 THR 120 B PRO 121 n 103 PRO 121 B ALA 122 n 104 ALA 122 B ILE 123 n 105 ILE 123 B GLY 124 n 106 GLY 124 B GLU 125 n 107 GLU 125 B VAL 126 n 108 VAL 126 B ASN 127 n 109 ASN 127 B GLY 128 n 110 GLY 128 B ASP 129 n 111 ASP 129 B ARG 130 n 112 ARG 130 B SER 131 n 113 SER 131 B ASN 132 n 114 ASN 132 B PHE 133 n 115 PHE 133 B ASN 134 n 116 ASN 134 B PHE 135 n 117 PHE 135 B SER 136 n 118 SER 136 B GLN 137 n 119 GLN 137 B TRP 138 n 120 TRP 138 B ASN 139 n 121 ASN 139 B GLY 140 n 122 GLY 140 B VAL 141 n 123 VAL 141 B ASP 142 n 124 ASP 142 B GLY 143 n 125 GLY 143 B VAL 144 n 126 VAL 144 B SER 145 n 127 SER 145 B TYR 146 n 128 TYR 146 B GLY 147 n 129 GLY 147 B ARG 148 n 130 ARG 148 B CYS 149 n 131 CYS 149 B GLU 150 n 132 GLU 150 B MET 151 n 133 MET 151 B GLN 152 n 134 GLN 152 B VAL 153 n 135 VAL 153 B ASN 154 n 136 ASN 154 B PHE 155 n 137 PHE 155 B LYS 156 n 138 LYS 156 B GLN 157 n 139 GLN 157 B ARG 158 n 140 ARG 158 B LYS 159 n 141 LYS 159 B VAL 160 n 142 VAL 160 B MET 161 n 143 MET 161 B PRO 162 n 144 PRO 162 B PRO 163 n 145 PRO 163 B ASP 164 n 146 ASP 164 B ARG 165 n 147 ARG 165 B ALA 166 n 148 ALA 166 B ARG 167 n 149 ARG 167 B GLY 168 n 150 GLY 168 B SER 169 n 151 SER 169 B ILE 170 n 152 ILE 170 B ALA 171 n 153 ALA 171 B ARG 172 n 154 ARG 172 B THR 173 n 155 THR 173 B TYR 174 n 156 TYR 174 B LEU 175 n 157 LEU 175 B TYR 176 n 158 TYR 176 B MET 177 n 159 MET 177 B SER 178 n 160 SER 178 B GLN 179 n 161 GLN 179 B GLU 180 n 162 GLU 180 B TYR 181 n 163 TYR 181 B GLY 182 n 164 GLY 182 B PHE 183 n 165 PHE 183 B GLN 184 n 166 GLN 184 B LEU 185 n 167 LEU 185 B SER 186 n 168 SER 186 B LYS 187 n 169 LYS 187 B GLN 188 n 170 GLN 188 B GLN 189 n 171 GLN 189 B GLN 190 n 172 GLN 190 B GLN 191 n 173 GLN 191 B LEU 192 n 174 LEU 192 B MET 193 n 175 MET 193 B GLN 194 n 176 GLN 194 B ALA 195 n 177 ALA 195 B TRP 196 n 178 TRP 196 B ASN 197 n 179 ASN 197 B LYS 198 n 180 LYS 198 B SER 199 n 181 SER 199 B TYR 200 n 182 TYR 200 B PRO 201 n 183 PRO 201 B VAL 202 n 184 VAL 202 B ASP 203 n 185 ASP 203 B GLU 204 n 186 GLU 204 B TRP 205 n 187 TRP 205 B GLU 206 n 188 GLU 206 B CYS 207 n 189 CYS 207 B THR 208 n 190 THR 208 B ARG 209 n 191 ARG 209 B ASP 210 n 192 ASP 210 B ASP 211 n 193 ASP 211 B ARG 212 n 194 ARG 212 B ILE 213 n 195 ILE 213 B ALA 214 n 196 ALA 214 B LYS 215 n 197 LYS 215 B ILE 216 n 198 ILE 216 B GLN 217 n 199 GLN 217 B GLY 218 n 200 GLY 218 B ASN 219 n 201 ASN 219 B HIS 220 n 202 HIS 220 B ASN 221 n 203 ASN 221 B PRO 222 n 204 PRO 222 B PHE 223 n 205 PHE 223 B VAL 224 n 206 VAL 224 B GLN 225 n 207 GLN 225 B GLN 226 n 208 GLN 226 B SER 227 n 209 SER 227 B CYS 228 n 210 CYS 228 B n 211 229 B n 212 230 B n 213 231 B author_defined_assembly 3 trimeric author_defined_assembly 4 tetrameric C HOH 461 J O HOH 1_555 B CA 300 I CA CA 1_555 B GLU 79 G OE1 GLU 61 1_555 93.5 C HOH 461 J O HOH 1_555 B CA 300 I CA CA 1_555 B ASN 127 G OD1 ASN 109 1_555 87.9 B GLU 79 G OE1 GLU 61 1_555 B CA 300 I CA CA 1_555 B ASN 127 G OD1 ASN 109 1_555 75.2 C HOH 461 J O HOH 1_555 B CA 300 I CA CA 1_555 B HOH 443 P O HOH 1_555 159.9 B GLU 79 G OE1 GLU 61 1_555 B CA 300 I CA CA 1_555 B HOH 443 P O HOH 1_555 102.3 B ASN 127 G OD1 ASN 109 1_555 B CA 300 I CA CA 1_555 B HOH 443 P O HOH 1_555 84.1 C HOH 461 J O HOH 1_555 B CA 300 I CA CA 1_555 B HOH 718 P O HOH 1_555 84.0 B GLU 79 G OE1 GLU 61 1_555 B CA 300 I CA CA 1_555 B HOH 718 P O HOH 1_555 88.9 B ASN 127 G OD1 ASN 109 1_555 B CA 300 I CA CA 1_555 B HOH 718 P O HOH 1_555 161.7 B HOH 443 P O HOH 1_555 B CA 300 I CA CA 1_555 B HOH 718 P O HOH 1_555 108.5 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 G HOH 720 M O HOH 1_555 75.2 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 A GLU 79 F OE1 GLU 61 1_555 158.3 G HOH 720 M O HOH 1_555 A CA 300 H CA CA 1_555 A GLU 79 F OE1 GLU 61 1_555 84.0 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 A ASN 127 F OD1 ASN 109 1_555 92.9 G HOH 720 M O HOH 1_555 A CA 300 H CA CA 1_555 A ASN 127 F OD1 ASN 109 1_555 90.8 A GLU 79 F OE1 GLU 61 1_555 A CA 300 H CA CA 1_555 A ASN 127 F OD1 ASN 109 1_555 93.6 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 A HOH 420 O O HOH 1_555 85.5 G HOH 720 M O HOH 1_555 A CA 300 H CA CA 1_555 A HOH 420 O O HOH 1_555 160.4 A GLU 79 F OE1 GLU 61 1_555 A CA 300 H CA CA 1_555 A HOH 420 O O HOH 1_555 115.5 A ASN 127 F OD1 ASN 109 1_555 A CA 300 H CA CA 1_555 A HOH 420 O O HOH 1_555 87.1 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 92.1 G HOH 720 M O HOH 1_555 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 84.4 A GLU 79 F OE1 GLU 61 1_555 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 79.5 A ASN 127 F OD1 ASN 109 1_555 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 172.0 A HOH 420 O O HOH 1_555 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 99.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 51 F N GLN 33 A O LYS 54 F O LYS 36 A N GLU 79 F N GLU 61 A O THR 120 F O THR 102 A N ASN 134 F N ASN 116 A O VAL 160 F O VAL 142 A O LYS 159 F O LYS 141 A N ASN 154 F N ASN 136 A O VAL 153 F O VAL 135 A N VAL 144 F N VAL 126 B N GLU 49 G N GLU 31 B O ILE 56 G O ILE 38 B N GLU 79 G N GLU 61 B O THR 120 G O THR 102 B N ASN 134 G N ASN 116 B O VAL 160 G O VAL 142 B O MET 161 G O MET 143 B N GLN 152 G N GLN 134 B O VAL 153 G O VAL 135 B N VAL 144 G N VAL 126 1 B GLN 229 G GLN 211 1 Y 1 B THR 230 G THR 212 1 Y 1 B GLN 231 G GLN 213 1 Y 1 E DA 4 0.057 SIDE CHAIN 1 E DT 5 0.074 SIDE CHAIN 1 G DG 7 0.054 SIDE CHAIN 1 F DG 11 0.050 SIDE CHAIN 1 F DT 13 0.063 SIDE CHAIN 1 -3.66 0.50 120.30 116.64 B B B NE CZ NH2 ARG ARG ARG 172 172 172 N 1 G G P OP3 DG DG 7 7 -0.086 0.012 1.607 1.521 N 1 A LYS 68 -168.12 5.30 1 A ASN 105 -110.39 -89.63 1 A ASP 106 -31.70 114.21 1 A SER 131 42.59 -138.31 1 A ASP 142 -153.24 61.75 1 A SER 145 -127.61 -169.73 1 B TRP 50 -69.12 82.57 1 B LEU 59 -48.81 -19.08 1 B LYS 68 -147.65 -47.31 1 B LYS 104 -175.98 -38.40 1 B SER 131 51.36 -129.59 1 B TRP 138 -175.17 -177.21 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA-VVN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 36.4 6.45 0.00 3.92 -0.99 0.00 -5.47 0.26 0.006 0.191 2.30 19.78 1616 21279 20729 7.8 97.5 RANDOM 1 RESTRAINED THROUGHOUT 0 MOLECULAR REPLACEMENT SeMet-Vvn Engh & Huber FLAT MODEL 41.7232 0.332758 0.35 0.25 5.00 0.22 0.17 2.30 19.78 328 4425 2 645 3450 0.011 1.4 21.8 1.14 1.45 1.50 2.29 2.00 2.09 2.00 3.04 2.50 0.263 0.016 0.201 2.44 264 3025 953 6 8.0 19.5 2.3 40 1OUP 21213 21165 0 0 0.073 1 20.2 7.5 100 2.3 2.38 4.4 0.282 100 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing CNS Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA 1 N N 1 N N 2 N N 3 N N 1 N N 4 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N Two protein/DNA complexes per asymmetry uint. Chains A,E,F are enzyme/product complex. Chains B,C,D are enzyme/substrate complex A SER 23 F SER 5 HELX_P A TYR 35 F TYR 17 1 1 13 A GLN 69 F GLN 51 HELX_P A SER 74 F SER 56 1 2 6 A PRO 83 F PRO 65 HELX_P A HIS 89 F HIS 71 1 3 7 A ARG 91 F ARG 73 HELX_P A ASN 105 F ASN 87 1 4 15 A ASP 106 F ASP 88 HELX_P A GLU 113 F GLU 95 1 5 8 A ALA 114 F ALA 96 HELX_P A HIS 117 F HIS 99 5 6 4 A GLY 124 F GLY 106 HELX_P A SER 131 F SER 113 1 7 8 A PRO 163 F PRO 145 HELX_P A GLY 182 F GLY 164 1 8 20 A SER 186 F SER 168 HELX_P A TYR 200 F TYR 182 1 9 15 A ASP 203 F ASP 185 HELX_P A GLY 218 F GLY 200 1 10 16 A ASN 221 F ASN 203 HELX_P A GLN 229 F GLN 211 1 11 9 B SER 23 G SER 5 HELX_P B TYR 35 G TYR 17 1 12 13 B GLN 69 G GLN 51 HELX_P B SER 74 G SER 56 1 13 6 B PRO 83 G PRO 65 HELX_P B HIS 89 G HIS 71 1 14 7 B ARG 91 G ARG 73 HELX_P B ASP 106 G ASP 88 1 15 16 B ASP 106 G ASP 88 HELX_P B ASP 115 G ASP 97 1 16 10 B GLY 124 G GLY 106 HELX_P B SER 131 G SER 113 1 17 8 B PRO 163 G PRO 145 HELX_P B GLY 182 G GLY 164 1 18 20 B SER 186 G SER 168 HELX_P B TYR 200 G TYR 182 1 19 15 B ASP 203 G ASP 185 HELX_P B GLY 218 G GLY 200 1 20 16 B ASN 221 G ASN 203 HELX_P B GLN 226 G GLN 208 1 21 6 disulf 2.037 A CYS 44 F SG CYS 26 1_555 A CYS 149 F SG CYS 131 1_555 disulf 2.042 A CYS 46 F SG CYS 28 1_555 A CYS 62 F SG CYS 44 1_555 disulf 2.037 A CYS 93 F SG CYS 75 1_555 A CYS 102 F SG CYS 84 1_555 disulf 2.015 A CYS 207 F SG CYS 189 1_555 A CYS 228 F SG CYS 210 1_555 disulf 2.037 B CYS 44 G SG CYS 26 1_555 B CYS 149 G SG CYS 131 1_555 disulf 2.032 B CYS 46 G SG CYS 28 1_555 B CYS 62 G SG CYS 44 1_555 disulf 2.038 B CYS 93 G SG CYS 75 1_555 B CYS 102 G SG CYS 84 1_555 disulf 2.029 B CYS 207 G SG CYS 189 1_555 B CYS 228 G SG CYS 210 1_555 metalc 2.528 C HOH 461 J O HOH 1_555 B CA 300 I CA CA 1_555 metalc 2.214 G DG 7 D OP3 DG 1 1_555 A CA 300 H CA CA 1_555 metalc 2.065 G HOH 720 M O HOH 1_555 A CA 300 H CA CA 1_555 metalc 2.071 A GLU 79 F OE1 GLU 61 1_555 A CA 300 H CA CA 1_555 metalc 2.326 A ASN 127 F OD1 ASN 109 1_555 A CA 300 H CA CA 1_555 metalc 2.567 A CA 300 H CA CA 1_555 A HOH 420 O O HOH 1_555 metalc 2.340 A CA 300 H CA CA 1_555 A HOH 719 O O HOH 1_555 metalc 2.245 B GLU 79 G OE1 GLU 61 1_555 B CA 300 I CA CA 1_555 metalc 2.361 B ASN 127 G OD1 ASN 109 1_555 B CA 300 I CA CA 1_555 metalc 2.416 B CA 300 I CA CA 1_555 B HOH 443 P O HOH 1_555 metalc 2.526 B CA 300 I CA CA 1_555 B HOH 718 P O HOH 1_555 hydrog WATSON-CRICK C DG 1 A N1 DG 1 1_555 D DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK C DG 1 A N2 DG 1 1_555 D DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK C DG 1 A O6 DG 1 1_555 D DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK C DC 2 A N3 DC 2 1_555 D DG 15 B N1 DG 7 1_555 hydrog WATSON-CRICK C DC 2 A N4 DC 2 1_555 D DG 15 B O6 DG 7 1_555 hydrog WATSON-CRICK C DC 2 A O2 DC 2 1_555 D DG 15 B N2 DG 7 1_555 hydrog WATSON-CRICK C DG 3 A N1 DG 3 1_555 D DC 14 B N3 DC 6 1_555 hydrog WATSON-CRICK C DG 3 A N2 DG 3 1_555 D DC 14 B O2 DC 6 1_555 hydrog WATSON-CRICK C DG 3 A O6 DG 3 1_555 D DC 14 B N4 DC 6 1_555 hydrog WATSON-CRICK C DA 4 A N1 DA 4 1_555 D DT 13 B N3 DT 5 1_555 hydrog WATSON-CRICK C DA 4 A N6 DA 4 1_555 D DT 13 B O4 DT 5 1_555 hydrog WATSON-CRICK C DT 5 A N3 DT 5 1_555 D DA 12 B N1 DA 4 1_555 hydrog WATSON-CRICK C DT 5 A O4 DT 5 1_555 D DA 12 B N6 DA 4 1_555 hydrog WATSON-CRICK C DC 6 A N3 DC 6 1_555 D DG 11 B N1 DG 3 1_555 hydrog WATSON-CRICK C DC 6 A N4 DC 6 1_555 D DG 11 B O6 DG 3 1_555 hydrog WATSON-CRICK C DC 6 A O2 DC 6 1_555 D DG 11 B N2 DG 3 1_555 hydrog WATSON-CRICK C DG 7 A N1 DG 7 1_555 D DC 10 B N3 DC 2 1_555 hydrog WATSON-CRICK C DG 7 A N2 DG 7 1_555 D DC 10 B O2 DC 2 1_555 hydrog WATSON-CRICK C DG 7 A O6 DG 7 1_555 D DC 10 B N4 DC 2 1_555 hydrog WATSON-CRICK C DC 8 A N3 DC 8 1_555 D DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK C DC 8 A N4 DC 8 1_555 D DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK C DC 8 A O2 DC 8 1_555 D DG 9 B N2 DG 1 1_555 hydrog WATSON-CRICK E DG 1 C N1 DG 1 1_555 F DC 16 E N3 DC 8 1_555 hydrog WATSON-CRICK E DG 1 C N2 DG 1 1_555 F DC 16 E O2 DC 8 1_555 hydrog WATSON-CRICK E DG 1 C O6 DG 1 1_555 F DC 16 E N4 DC 8 1_555 hydrog WATSON-CRICK E DC 2 C N3 DC 2 1_555 F DG 15 E N1 DG 7 1_555 hydrog WATSON-CRICK E DC 2 C N4 DC 2 1_555 F DG 15 E O6 DG 7 1_555 hydrog WATSON-CRICK E DC 2 C O2 DC 2 1_555 F DG 15 E N2 DG 7 1_555 hydrog WATSON-CRICK E DG 3 C N1 DG 3 1_555 F DC 14 E N3 DC 6 1_555 hydrog WATSON-CRICK E DG 3 C N2 DG 3 1_555 F DC 14 E O2 DC 6 1_555 hydrog WATSON-CRICK E DG 3 C O6 DG 3 1_555 F DC 14 E N4 DC 6 1_555 hydrog WATSON-CRICK E DA 4 C N1 DA 4 1_555 F DT 13 E N3 DT 5 1_555 hydrog WATSON-CRICK E DA 4 C N6 DA 4 1_555 F DT 13 E O4 DT 5 1_555 hydrog WATSON-CRICK E DT 5 C N3 DT 5 1_555 F DA 12 E N1 DA 4 1_555 hydrog WATSON-CRICK E DT 5 C O4 DT 5 1_555 F DA 12 E N6 DA 4 1_555 hydrog WATSON-CRICK E DC 6 C N3 DC 6 1_555 F DG 11 E N1 DG 3 1_555 hydrog WATSON-CRICK E DC 6 C N4 DC 6 1_555 F DG 11 E O6 DG 3 1_555 hydrog WATSON-CRICK E DC 6 C O2 DC 6 1_555 F DG 11 E N2 DG 3 1_555 hydrog WATSON-CRICK G DG 7 D N1 DG 1 1_555 F DC 10 E N3 DC 2 1_555 hydrog WATSON-CRICK G DG 7 D N2 DG 1 1_555 F DC 10 E O2 DC 2 1_555 hydrog WATSON-CRICK G DG 7 D O6 DG 1 1_555 F DC 10 E N4 DC 2 1_555 hydrog WATSON-CRICK G DC 8 D N3 DC 2 1_555 F DG 9 E N1 DG 1 1_555 hydrog WATSON-CRICK G DC 8 D N4 DC 2 1_555 F DG 9 E O6 DG 1 1_555 hydrog WATSON-CRICK G DC 8 D O2 DC 2 1_555 F DG 9 E N2 DG 1 1_555 HYDROLASE/DNA Non-specific endonuclease, beta-beta-alpha metal motif, HYDROLASE-DNA COMPLEX Q8DCA6_VIBVU UNP 4 19 Q8DCA6 APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEHVVPAWQFGHHRQCWQKGG RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPQTELRGSIARTYLYMS QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ 1OUP PDB 1 1OUP 1OUP PDB 2 1OUP 1OUP PDB 3 1OUP 19 231 1OUP 19 231 Q8DCA6 A 1 1 213 19 231 1OUP 19 231 Q8DCA6 B 1 1 213 1 8 1OUP 1 8 1OUP C 2 1 8 9 16 1OUP 9 16 1OUP D 2 1 8 1 6 1OUP 1 6 1OUP E 3 1 6 7 8 1OUP 7 8 1OUP G 4 1 2 9 16 1OUP 9 16 1OUP F 2 1 8 1 HIS engineered mutation ALA 80 1OUP A Q8DCA6 UNP 80 62 1 GLN SEE REMARK 999 PRO 163 1OUP A Q8DCA6 UNP 163 145 1 THR SEE REMARK 999 ASP 164 1OUP A Q8DCA6 UNP 164 146 1 GLU SEE REMARK 999 ARG 165 1OUP A Q8DCA6 UNP 165 147 1 LEU SEE REMARK 999 ALA 166 1OUP A Q8DCA6 UNP 166 148 2 HIS engineered mutation ALA 80 1OUP B Q8DCA6 UNP 80 62 2 GLN SEE REMARK 999 PRO 163 1OUP B Q8DCA6 UNP 163 145 2 THR SEE REMARK 999 ASP 164 1OUP B Q8DCA6 UNP 164 146 2 GLU SEE REMARK 999 ARG 165 1OUP B Q8DCA6 UNP 165 147 2 LEU SEE REMARK 999 ALA 166 1OUP B Q8DCA6 UNP 166 148 2 2 4 2 2 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 48 F ILE 30 A GLN 51 F GLN 33 A LYS 54 F LYS 36 A PRO 57 F PRO 39 A ILE 76 F ILE 58 A ALA 80 F ALA 62 A LEU 119 F LEU 101 A ILE 123 F ILE 105 A ASN 134 F ASN 116 A PHE 135 F PHE 117 A LYS 159 F LYS 141 A MET 161 F MET 143 A CYS 149 F CYS 131 A ASN 154 F ASN 136 A VAL 144 F VAL 126 A TYR 146 F TYR 128 B ILE 48 G ILE 30 B GLU 49 G GLU 31 B ILE 56 G ILE 38 B PRO 57 G PRO 39 B ILE 76 G ILE 58 B ALA 80 G ALA 62 B LEU 119 G LEU 101 B ILE 123 G ILE 105 B ASN 134 G ASN 116 B PHE 135 G PHE 117 B LYS 159 G LYS 141 B MET 161 G MET 143 B CYS 149 G CYS 131 B ASN 154 G ASN 136 B VAL 144 G VAL 126 B TYR 146 G TYR 128 BINDING SITE FOR RESIDUE CA A 300 A CA 300 Software 6 BINDING SITE FOR RESIDUE CA B 300 B CA 300 Software 6 A GLU 79 F GLU 61 6 1_555 A ASN 127 F ASN 109 6 1_555 A HOH 420 O HOH 6 1_555 A HOH 719 O HOH 6 1_555 G DG 7 D DG 1 6 1_555 G HOH 720 M HOH 6 1_555 B GLU 79 G GLU 61 6 1_555 B ASN 127 G ASN 109 6 1_555 B HOH 443 P HOH 6 1_555 B HOH 718 P HOH 6 1_555 C DG 7 A DG 7 6 1_555 C HOH 461 J HOH 6 1_555 4 P 1 21 1