0.018609
0.000000
0.002459
0.000000
0.019955
0.000000
0.000000
0.000000
0.011257
0.00000
0.00000
0.00000
Yuan, H.S.
Li, C.-L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
97.53
90.00
53.74
50.11
89.61
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
N
Y
288
N
C
Y
289
N
C
Y
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
S
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
N
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
S
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
R
C
N
453
N
O
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
N
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
N
503
N
O
N
504
N
O
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
C
N
523
N
O
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
22
4014
4025
10.1093/emboj/cdg377
12881435
DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site.
2003
10.2210/pdb1oup/pdb
pdb_00001oup
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-11-25
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9065
1.0
BL12B2
SPring-8
0.9065
SYNCHROTRON
SPRING-8 BEAMLINE BL12B2
2427.605
5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'
3
syn
polymer
1809.218
5'-D(*GP*CP*GP*AP*TP*C)-3'
1
syn
polymer
573.430
5'-D(P*GP*C)-3'
1
syn
polymer
24751.709
Nuclease
3.1.-.-
residues 19-231
H80A
2
man
polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
328
nat
water
VVN Nuclease
no
no
(DG)(DC)(DG)(DA)(DT)(DC)(DG)(DC)
GCGATCGC
C,D,F
polydeoxyribonucleotide
no
no
(DG)(DC)(DG)(DA)(DT)(DC)
GCGATC
E
polydeoxyribonucleotide
no
no
(DG)(DC)
GC
G
polydeoxyribonucleotide
no
no
APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGG
RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMS
QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ
APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGG
RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMS
QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Vibrio
Escherichia
sample
672
Vibrio vulnificus
562
Escherichia coli
B834(DE3)
plasmid
pTYB2
1
1.93
35.80
VAPOR DIFFUSION, HANGING DROP
7.3
PEG3350, Calcium acetate, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
PEG3350
1
Calcium acetate
1
PEG3350
2
Calcium acetate
2
-13.359
1
19
C
1
D
16
-1.667
C_DG1:DC16_D
1
-7.754
-0.919
-0.336
-0.542
-15.079
1
19
C
2
D
15
-2.470
C_DC2:DG15_D
2
-6.718
0.124
0.073
-0.043
-4.115
1
19
C
3
D
14
-6.153
C_DG3:DC14_D
3
-2.428
-0.098
-0.160
-0.227
-10.044
1
20
C
4
D
13
-6.664
C_DA4:DT13_D
4
2.314
1.031
-0.320
0.109
-2.177
1
20
C
5
D
12
3.173
C_DT5:DA12_D
5
0.703
-0.465
-0.044
-0.236
6.874
1
19
C
6
D
11
1.198
C_DC6:DG11_D
6
-9.518
-0.226
0.112
0.113
16.034
1
19
C
7
D
10
-5.536
C_DG7:DC10_D
7
-3.151
-0.612
0.252
-0.112
16.168
1
19
C
8
D
9
-6.585
C_DC8:DG9_D
8
-6.988
-0.395
-0.980
0.009
8.358
1
19
E
1
F
16
-0.499
E_DG1:DC16_F
9
2.510
-0.330
-0.081
-0.501
-3.067
1
19
E
2
F
15
3.349
E_DC2:DG15_F
10
-6.746
0.860
-0.449
-0.421
0.400
1
19
E
3
F
14
-3.088
E_DG3:DC14_F
11
-9.935
0.502
-0.157
-0.197
7.740
1
20
E
4
F
13
-12.943
E_DA4:DT13_F
12
-4.575
-0.546
-0.305
-0.238
22.654
1
20
E
5
F
12
-0.499
E_DT5:DA12_F
13
-10.048
0.209
-0.860
-0.248
-15.558
1
19
E
6
F
11
-0.208
E_DC6:DG11_F
14
-9.563
-1.111
0.253
-0.208
-18.074
1
19
G
7
F
10
0.221
G_DG7:DC10_F
15
-1.156
-0.823
-0.491
-0.071
-2.849
1
19
G
8
F
9
-11.786
G_DC8:DG9_F
16
7.462
-0.485
-0.139
-0.138
3.631
43.022
C
C
1
2
-10.336
D
D
16
15
3.536
-7.544
-1.092
-0.780
CC_DG1DC2:DG15DC16_DD
1
-0.582
0.798
42.383
-0.241
1.425
3.212
31.039
C
C
2
3
14.246
D
D
15
14
3.083
7.550
0.080
0.910
CC_DC2DG3:DC14DG15_DD
2
0.352
-0.663
30.126
0.283
-0.083
3.163
40.295
C
C
3
4
25.577
D
D
14
13
3.572
17.103
0.064
-0.233
CC_DG3DA4:DT13DC14_DD
3
0.600
-0.897
36.618
-2.433
-0.019
3.130
24.221
C
C
4
5
-0.165
D
D
13
12
3.134
-0.069
1.294
-0.655
CC_DA4DT5:DA12DT13_DD
4
-0.111
0.265
24.221
-1.539
-3.118
2.862
30.673
C
C
5
6
19.469
D
D
12
11
3.249
10.097
0.084
-0.636
CC_DT5DC6:DG11DA12_DD
5
3.141
-6.057
28.834
-3.120
0.438
3.232
33.943
C
C
6
7
9.515
D
D
11
10
3.217
5.531
-0.599
0.283
CC_DC6DG7:DC10DG11_DD
6
-0.622
1.070
33.496
-0.395
0.927
3.249
34.441
C
C
7
8
8.196
D
D
10
9
3.358
4.780
0.527
-0.719
CC_DG7DC8:DG9DC10_DD
7
9.322
-15.983
32.855
-1.985
0.612
3.535
39.155
E
E
1
2
5.367
F
F
16
15
3.716
3.590
-0.780
-1.257
EE_DG1DC2:DG15DC16_FF
8
2.538
-3.794
38.917
-2.353
1.501
3.275
30.527
E
E
2
3
30.904
F
F
15
14
3.446
15.537
-0.168
0.574
EE_DC2DG3:DC14DG15_FF
9
-1.177
2.341
26.333
-2.331
0.059
2.861
25.913
E
E
3
4
17.972
F
F
14
13
3.112
7.928
-0.214
-0.376
EE_DG3DA4:DT13DC14_FF
10
-1.729
3.920
24.631
-2.896
0.029
2.857
34.565
E
E
4
5
16.828
F
F
13
12
3.032
9.859
0.853
-0.391
EE_DA4DT5:DA12DT13_FF
11
2.503
-4.272
33.078
-2.062
-1.079
4.336
30.200
E
E
5
6
3.543
F
F
12
11
4.467
1.835
-0.149
-1.252
EE_DT5DC6:DG11DA12_FF
12
-5.691
10.993
29.616
-2.909
-1.286
2.640
33.904
E
G
6
7
25.392
F
F
11
10
3.334
14.326
0.543
-1.058
EG_DC6DG7:DC10DG11_FF
13
4.265
-7.559
30.519
-4.035
-0.270
3.060
32.713
G
G
7
8
2.762
F
F
10
9
3.112
1.555
-0.725
-1.200
GG_DG7DC8:DG9DC10_FF
14
-0.321
0.571
32.676
-2.384
1.236
refine_ls_shell
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2003-08-05
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-11-10
1
5
2024-04-03
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.percent_reflns_obs
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1OUO contains the same protein complexed with MG
RCSB
Y
PDBJ
2003-03-25
REL
REL
CA
CALCIUM ION
HOH
water
SeMet-Vvn
Other
experimental model
CA
300
5
CA
CA
300
A
CA
300
5
CA
CA
300
B
HOH
461
6
HOH
HOH
461
C
HOH
463
6
HOH
HOH
463
C
HOH
488
6
HOH
HOH
488
C
HOH
499
6
HOH
HOH
499
C
HOH
595
6
HOH
HOH
595
C
HOH
600
6
HOH
HOH
600
C
HOH
601
6
HOH
HOH
601
C
HOH
713
6
HOH
HOH
713
C
HOH
725
6
HOH
HOH
725
C
HOH
491
6
HOH
HOH
491
D
HOH
494
6
HOH
HOH
494
D
HOH
573
6
HOH
HOH
573
D
HOH
714
6
HOH
HOH
714
D
HOH
527
6
HOH
HOH
527
E
HOH
529
6
HOH
HOH
529
E
HOH
715
6
HOH
HOH
715
E
HOH
578
6
HOH
HOH
578
G
HOH
585
6
HOH
HOH
585
G
HOH
720
6
HOH
HOH
720
G
HOH
476
6
HOH
HOH
476
F
HOH
525
6
HOH
HOH
525
F
HOH
526
6
HOH
HOH
526
F
HOH
528
6
HOH
HOH
528
F
HOH
587
6
HOH
HOH
587
F
HOH
681
6
HOH
HOH
681
F
HOH
716
6
HOH
HOH
716
F
HOH
717
6
HOH
HOH
717
F
HOH
400
6
HOH
HOH
400
A
HOH
401
6
HOH
HOH
401
A
HOH
402
6
HOH
HOH
402
A
HOH
404
6
HOH
HOH
404
A
HOH
406
6
HOH
HOH
406
A
HOH
407
6
HOH
HOH
407
A
HOH
408
6
HOH
HOH
408
A
HOH
409
6
HOH
HOH
409
A
HOH
410
6
HOH
HOH
410
A
HOH
413
6
HOH
HOH
413
A
HOH
414
6
HOH
HOH
414
A
HOH
415
6
HOH
HOH
415
A
HOH
419
6
HOH
HOH
419
A
HOH
420
6
HOH
HOH
420
A
HOH
421
6
HOH
HOH
421
A
HOH
422
6
HOH
HOH
422
A
HOH
426
6
HOH
HOH
426
A
HOH
428
6
HOH
HOH
428
A
HOH
431
6
HOH
HOH
431
A
HOH
432
6
HOH
HOH
432
A
HOH
435
6
HOH
HOH
435
A
HOH
436
6
HOH
HOH
436
A
HOH
437
6
HOH
HOH
437
A
HOH
439
6
HOH
HOH
439
A
HOH
444
6
HOH
HOH
444
A
HOH
445
6
HOH
HOH
445
A
HOH
446
6
HOH
HOH
446
A
HOH
447
6
HOH
HOH
447
A
HOH
448
6
HOH
HOH
448
A
HOH
449
6
HOH
HOH
449
A
HOH
450
6
HOH
HOH
450
A
HOH
451
6
HOH
HOH
451
A
HOH
452
6
HOH
HOH
452
A
HOH
453
6
HOH
HOH
453
A
HOH
454
6
HOH
HOH
454
A
HOH
456
6
HOH
HOH
456
A
HOH
457
6
HOH
HOH
457
A
HOH
459
6
HOH
HOH
459
A
HOH
462
6
HOH
HOH
462
A
HOH
464
6
HOH
HOH
464
A
HOH
465
6
HOH
HOH
465
A
HOH
466
6
HOH
HOH
466
A
HOH
469
6
HOH
HOH
469
A
HOH
471
6
HOH
HOH
471
A
HOH
472
6
HOH
HOH
472
A
HOH
473
6
HOH
HOH
473
A
HOH
474
6
HOH
HOH
474
A
HOH
475
6
HOH
HOH
475
A
HOH
479
6
HOH
HOH
479
A
HOH
480
6
HOH
HOH
480
A
HOH
481
6
HOH
HOH
481
A
HOH
483
6
HOH
HOH
483
A
HOH
485
6
HOH
HOH
485
A
HOH
486
6
HOH
HOH
486
A
HOH
487
6
HOH
HOH
487
A
HOH
489
6
HOH
HOH
489
A
HOH
490
6
HOH
HOH
490
A
HOH
492
6
HOH
HOH
492
A
HOH
493
6
HOH
HOH
493
A
HOH
495
6
HOH
HOH
495
A
HOH
496
6
HOH
HOH
496
A
HOH
497
6
HOH
HOH
497
A
HOH
500
6
HOH
HOH
500
A
HOH
501
6
HOH
HOH
501
A
HOH
502
6
HOH
HOH
502
A
HOH
503
6
HOH
HOH
503
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
510
6
HOH
HOH
510
A
HOH
513
6
HOH
HOH
513
A
HOH
515
6
HOH
HOH
515
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
518
6
HOH
HOH
518
A
HOH
519
6
HOH
HOH
519
A
HOH
520
6
HOH
HOH
520
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
538
6
HOH
HOH
538
A
HOH
539
6
HOH
HOH
539
A
HOH
540
6
HOH
HOH
540
A
HOH
541
6
HOH
HOH
541
A
HOH
542
6
HOH
HOH
542
A
HOH
543
6
HOH
HOH
543
A
HOH
544
6
HOH
HOH
544
A
HOH
545
6
HOH
HOH
545
A
HOH
546
6
HOH
HOH
546
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
549
6
HOH
HOH
549
A
HOH
550
6
HOH
HOH
550
A
HOH
551
6
HOH
HOH
551
A
HOH
552
6
HOH
HOH
552
A
HOH
553
6
HOH
HOH
553
A
HOH
554
6
HOH
HOH
554
A
HOH
555
6
HOH
HOH
555
A
HOH
556
6
HOH
HOH
556
A
HOH
557
6
HOH
HOH
557
A
HOH
558
6
HOH
HOH
558
A
HOH
560
6
HOH
HOH
560
A
HOH
561
6
HOH
HOH
561
A
HOH
562
6
HOH
HOH
562
A
HOH
563
6
HOH
HOH
563
A
HOH
569
6
HOH
HOH
569
A
HOH
570
6
HOH
HOH
570
A
HOH
571
6
HOH
HOH
571
A
HOH
572
6
HOH
HOH
572
A
HOH
574
6
HOH
HOH
574
A
HOH
575
6
HOH
HOH
575
A
HOH
576
6
HOH
HOH
576
A
HOH
582
6
HOH
HOH
582
A
HOH
583
6
HOH
HOH
583
A
HOH
584
6
HOH
HOH
584
A
HOH
588
6
HOH
HOH
588
A
HOH
591
6
HOH
HOH
591
A
HOH
592
6
HOH
HOH
592
A
HOH
593
6
HOH
HOH
593
A
HOH
594
6
HOH
HOH
594
A
HOH
596
6
HOH
HOH
596
A
HOH
597
6
HOH
HOH
597
A
HOH
609
6
HOH
HOH
609
A
HOH
610
6
HOH
HOH
610
A
HOH
611
6
HOH
HOH
611
A
HOH
612
6
HOH
HOH
612
A
HOH
613
6
HOH
HOH
613
A
HOH
614
6
HOH
HOH
614
A
HOH
615
6
HOH
HOH
615
A
HOH
616
6
HOH
HOH
616
A
HOH
617
6
HOH
HOH
617
A
HOH
618
6
HOH
HOH
618
A
HOH
619
6
HOH
HOH
619
A
HOH
620
6
HOH
HOH
620
A
HOH
623
6
HOH
HOH
623
A
HOH
633
6
HOH
HOH
633
A
HOH
634
6
HOH
HOH
634
A
HOH
635
6
HOH
HOH
635
A
HOH
636
6
HOH
HOH
636
A
HOH
637
6
HOH
HOH
637
A
HOH
638
6
HOH
HOH
638
A
HOH
639
6
HOH
HOH
639
A
HOH
643
6
HOH
HOH
643
A
HOH
644
6
HOH
HOH
644
A
HOH
646
6
HOH
HOH
646
A
HOH
647
6
HOH
HOH
647
A
HOH
648
6
HOH
HOH
648
A
HOH
649
6
HOH
HOH
649
A
HOH
650
6
HOH
HOH
650
A
HOH
652
6
HOH
HOH
652
A
HOH
653
6
HOH
HOH
653
A
HOH
654
6
HOH
HOH
654
A
HOH
655
6
HOH
HOH
655
A
HOH
656
6
HOH
HOH
656
A
HOH
657
6
HOH
HOH
657
A
HOH
659
6
HOH
HOH
659
A
HOH
660
6
HOH
HOH
660
A
HOH
661
6
HOH
HOH
661
A
HOH
663
6
HOH
HOH
663
A
HOH
664
6
HOH
HOH
664
A
HOH
665
6
HOH
HOH
665
A
HOH
666
6
HOH
HOH
666
A
HOH
667
6
HOH
HOH
667
A
HOH
668
6
HOH
HOH
668
A
HOH
669
6
HOH
HOH
669
A
HOH
670
6
HOH
HOH
670
A
HOH
671
6
HOH
HOH
671
A
HOH
672
6
HOH
HOH
672
A
HOH
675
6
HOH
HOH
675
A
HOH
676
6
HOH
HOH
676
A
HOH
677
6
HOH
HOH
677
A
HOH
678
6
HOH
HOH
678
A
HOH
679
6
HOH
HOH
679
A
HOH
680
6
HOH
HOH
680
A
HOH
682
6
HOH
HOH
682
A
HOH
683
6
HOH
HOH
683
A
HOH
685
6
HOH
HOH
685
A
HOH
686
6
HOH
HOH
686
A
HOH
687
6
HOH
HOH
687
A
HOH
688
6
HOH
HOH
688
A
HOH
689
6
HOH
HOH
689
A
HOH
691
6
HOH
HOH
691
A
HOH
692
6
HOH
HOH
692
A
HOH
693
6
HOH
HOH
693
A
HOH
694
6
HOH
HOH
694
A
HOH
719
6
HOH
HOH
719
A
HOH
721
6
HOH
HOH
721
A
HOH
403
6
HOH
HOH
403
B
HOH
405
6
HOH
HOH
405
B
HOH
411
6
HOH
HOH
411
B
HOH
412
6
HOH
HOH
412
B
HOH
416
6
HOH
HOH
416
B
HOH
417
6
HOH
HOH
417
B
HOH
418
6
HOH
HOH
418
B
HOH
423
6
HOH
HOH
423
B
HOH
424
6
HOH
HOH
424
B
HOH
425
6
HOH
HOH
425
B
HOH
427
6
HOH
HOH
427
B
HOH
429
6
HOH
HOH
429
B
HOH
430
6
HOH
HOH
430
B
HOH
433
6
HOH
HOH
433
B
HOH
434
6
HOH
HOH
434
B
HOH
438
6
HOH
HOH
438
B
HOH
440
6
HOH
HOH
440
B
HOH
441
6
HOH
HOH
441
B
HOH
442
6
HOH
HOH
442
B
HOH
443
6
HOH
HOH
443
B
HOH
455
6
HOH
HOH
455
B
HOH
458
6
HOH
HOH
458
B
HOH
460
6
HOH
HOH
460
B
HOH
467
6
HOH
HOH
467
B
HOH
468
6
HOH
HOH
468
B
HOH
470
6
HOH
HOH
470
B
HOH
477
6
HOH
HOH
477
B
HOH
478
6
HOH
HOH
478
B
HOH
482
6
HOH
HOH
482
B
HOH
484
6
HOH
HOH
484
B
HOH
498
6
HOH
HOH
498
B
HOH
504
6
HOH
HOH
504
B
HOH
508
6
HOH
HOH
508
B
HOH
509
6
HOH
HOH
509
B
HOH
511
6
HOH
HOH
511
B
HOH
512
6
HOH
HOH
512
B
HOH
514
6
HOH
HOH
514
B
HOH
530
6
HOH
HOH
530
B
HOH
531
6
HOH
HOH
531
B
HOH
532
6
HOH
HOH
532
B
HOH
533
6
HOH
HOH
533
B
HOH
534
6
HOH
HOH
534
B
HOH
535
6
HOH
HOH
535
B
HOH
536
6
HOH
HOH
536
B
HOH
537
6
HOH
HOH
537
B
HOH
559
6
HOH
HOH
559
B
HOH
564
6
HOH
HOH
564
B
HOH
565
6
HOH
HOH
565
B
HOH
566
6
HOH
HOH
566
B
HOH
567
6
HOH
HOH
567
B
HOH
568
6
HOH
HOH
568
B
HOH
577
6
HOH
HOH
577
B
HOH
579
6
HOH
HOH
579
B
HOH
580
6
HOH
HOH
580
B
HOH
581
6
HOH
HOH
581
B
HOH
586
6
HOH
HOH
586
B
HOH
589
6
HOH
HOH
589
B
HOH
590
6
HOH
HOH
590
B
HOH
598
6
HOH
HOH
598
B
HOH
599
6
HOH
HOH
599
B
HOH
602
6
HOH
HOH
602
B
HOH
603
6
HOH
HOH
603
B
HOH
604
6
HOH
HOH
604
B
HOH
605
6
HOH
HOH
605
B
HOH
606
6
HOH
HOH
606
B
HOH
607
6
HOH
HOH
607
B
HOH
608
6
HOH
HOH
608
B
HOH
621
6
HOH
HOH
621
B
HOH
622
6
HOH
HOH
622
B
HOH
624
6
HOH
HOH
624
B
HOH
625
6
HOH
HOH
625
B
HOH
626
6
HOH
HOH
626
B
HOH
627
6
HOH
HOH
627
B
HOH
628
6
HOH
HOH
628
B
HOH
629
6
HOH
HOH
629
B
HOH
630
6
HOH
HOH
630
B
HOH
631
6
HOH
HOH
631
B
HOH
632
6
HOH
HOH
632
B
HOH
640
6
HOH
HOH
640
B
HOH
641
6
HOH
HOH
641
B
HOH
642
6
HOH
HOH
642
B
HOH
645
6
HOH
HOH
645
B
HOH
651
6
HOH
HOH
651
B
HOH
658
6
HOH
HOH
658
B
HOH
662
6
HOH
HOH
662
B
HOH
673
6
HOH
HOH
673
B
HOH
674
6
HOH
HOH
674
B
HOH
684
6
HOH
HOH
684
B
HOH
690
6
HOH
HOH
690
B
HOH
695
6
HOH
HOH
695
B
HOH
696
6
HOH
HOH
696
B
HOH
697
6
HOH
HOH
697
B
HOH
698
6
HOH
HOH
698
B
HOH
699
6
HOH
HOH
699
B
HOH
700
6
HOH
HOH
700
B
HOH
701
6
HOH
HOH
701
B
HOH
702
6
HOH
HOH
702
B
HOH
703
6
HOH
HOH
703
B
HOH
704
6
HOH
HOH
704
B
HOH
705
6
HOH
HOH
705
B
HOH
706
6
HOH
HOH
706
B
HOH
707
6
HOH
HOH
707
B
HOH
708
6
HOH
HOH
708
B
HOH
709
6
HOH
HOH
709
B
HOH
710
6
HOH
HOH
710
B
HOH
711
6
HOH
HOH
711
B
HOH
712
6
HOH
HOH
712
B
HOH
718
6
HOH
HOH
718
B
HOH
722
6
HOH
HOH
722
B
HOH
723
6
HOH
HOH
723
B
HOH
724
6
HOH
HOH
724
B
HOH
726
6
HOH
HOH
726
B
HOH
727
6
HOH
HOH
727
B
G
1
n
1
DG
1
C
C
2
n
2
DC
2
C
G
3
n
3
DG
3
C
A
4
n
4
DA
4
C
T
5
n
5
DT
5
C
C
6
n
6
DC
6
C
G
7
n
7
DG
7
C
C
8
n
8
DC
8
C
G
9
n
1
DG
9
D
C
10
n
2
DC
10
D
G
11
n
3
DG
11
D
A
12
n
4
DA
12
D
T
13
n
5
DT
13
D
C
14
n
6
DC
14
D
G
15
n
7
DG
15
D
C
16
n
8
DC
16
D
G
1
n
1
DG
1
E
C
2
n
2
DC
2
E
G
3
n
3
DG
3
E
A
4
n
4
DA
4
E
T
5
n
5
DT
5
E
C
6
n
6
DC
6
E
G
7
n
1
DG
7
G
C
8
n
2
DC
8
G
G
9
n
1
DG
9
F
C
10
n
2
DC
10
F
G
11
n
3
DG
11
F
A
12
n
4
DA
12
F
T
13
n
5
DT
13
F
C
14
n
6
DC
14
F
G
15
n
7
DG
15
F
C
16
n
8
DC
16
F
ALA
19
n
1
ALA
19
A
PRO
20
n
2
PRO
20
A
PRO
21
n
3
PRO
21
A
SER
22
n
4
SER
22
A
SER
23
n
5
SER
23
A
PHE
24
n
6
PHE
24
A
SER
25
n
7
SER
25
A
ALA
26
n
8
ALA
26
A
ALA
27
n
9
ALA
27
A
LYS
28
n
10
LYS
28
A
GLN
29
n
11
GLN
29
A
GLN
30
n
12
GLN
30
A
ALA
31
n
13
ALA
31
A
VAL
32
n
14
VAL
32
A
LYS
33
n
15
LYS
33
A
ILE
34
n
16
ILE
34
A
TYR
35
n
17
TYR
35
A
GLN
36
n
18
GLN
36
A
ASP
37
n
19
ASP
37
A
HIS
38
n
20
HIS
38
A
PRO
39
n
21
PRO
39
A
ILE
40
n
22
ILE
40
A
SER
41
n
23
SER
41
A
PHE
42
n
24
PHE
42
A
TYR
43
n
25
TYR
43
A
CYS
44
n
26
CYS
44
A
GLY
45
n
27
GLY
45
A
CYS
46
n
28
CYS
46
A
ASP
47
n
29
ASP
47
A
ILE
48
n
30
ILE
48
A
GLU
49
n
31
GLU
49
A
TRP
50
n
32
TRP
50
A
GLN
51
n
33
GLN
51
A
GLY
52
n
34
GLY
52
A
LYS
53
n
35
LYS
53
A
LYS
54
n
36
LYS
54
A
GLY
55
n
37
GLY
55
A
ILE
56
n
38
ILE
56
A
PRO
57
n
39
PRO
57
A
ASN
58
n
40
ASN
58
A
LEU
59
n
41
LEU
59
A
GLU
60
n
42
GLU
60
A
THR
61
n
43
THR
61
A
CYS
62
n
44
CYS
62
A
GLY
63
n
45
GLY
63
A
TYR
64
n
46
TYR
64
A
GLN
65
n
47
GLN
65
A
VAL
66
n
48
VAL
66
A
ARG
67
n
49
ARG
67
A
LYS
68
n
50
LYS
68
A
GLN
69
n
51
GLN
69
A
GLN
70
n
52
GLN
70
A
THR
71
n
53
THR
71
A
ARG
72
n
54
ARG
72
A
ALA
73
n
55
ALA
73
A
SER
74
n
56
SER
74
A
ARG
75
n
57
ARG
75
A
ILE
76
n
58
ILE
76
A
GLU
77
n
59
GLU
77
A
TRP
78
n
60
TRP
78
A
GLU
79
n
61
GLU
79
A
ALA
80
n
62
ALA
80
A
VAL
81
n
63
VAL
81
A
VAL
82
n
64
VAL
82
A
PRO
83
n
65
PRO
83
A
ALA
84
n
66
ALA
84
A
TRP
85
n
67
TRP
85
A
GLN
86
n
68
GLN
86
A
PHE
87
n
69
PHE
87
A
GLY
88
n
70
GLY
88
A
HIS
89
n
71
HIS
89
A
HIS
90
n
72
HIS
90
A
ARG
91
n
73
ARG
91
A
GLN
92
n
74
GLN
92
A
CYS
93
n
75
CYS
93
A
TRP
94
n
76
TRP
94
A
GLN
95
n
77
GLN
95
A
LYS
96
n
78
LYS
96
A
GLY
97
n
79
GLY
97
A
GLY
98
n
80
GLY
98
A
ARG
99
n
81
ARG
99
A
LYS
100
n
82
LYS
100
A
ASN
101
n
83
ASN
101
A
CYS
102
n
84
CYS
102
A
SER
103
n
85
SER
103
A
LYS
104
n
86
LYS
104
A
ASN
105
n
87
ASN
105
A
ASP
106
n
88
ASP
106
A
GLN
107
n
89
GLN
107
A
GLN
108
n
90
GLN
108
A
PHE
109
n
91
PHE
109
A
ARG
110
n
92
ARG
110
A
LEU
111
n
93
LEU
111
A
MET
112
n
94
MET
112
A
GLU
113
n
95
GLU
113
A
ALA
114
n
96
ALA
114
A
ASP
115
n
97
ASP
115
A
LEU
116
n
98
LEU
116
A
HIS
117
n
99
HIS
117
A
ASN
118
n
100
ASN
118
A
LEU
119
n
101
LEU
119
A
THR
120
n
102
THR
120
A
PRO
121
n
103
PRO
121
A
ALA
122
n
104
ALA
122
A
ILE
123
n
105
ILE
123
A
GLY
124
n
106
GLY
124
A
GLU
125
n
107
GLU
125
A
VAL
126
n
108
VAL
126
A
ASN
127
n
109
ASN
127
A
GLY
128
n
110
GLY
128
A
ASP
129
n
111
ASP
129
A
ARG
130
n
112
ARG
130
A
SER
131
n
113
SER
131
A
ASN
132
n
114
ASN
132
A
PHE
133
n
115
PHE
133
A
ASN
134
n
116
ASN
134
A
PHE
135
n
117
PHE
135
A
SER
136
n
118
SER
136
A
GLN
137
n
119
GLN
137
A
TRP
138
n
120
TRP
138
A
ASN
139
n
121
ASN
139
A
GLY
140
n
122
GLY
140
A
VAL
141
n
123
VAL
141
A
ASP
142
n
124
ASP
142
A
GLY
143
n
125
GLY
143
A
VAL
144
n
126
VAL
144
A
SER
145
n
127
SER
145
A
TYR
146
n
128
TYR
146
A
GLY
147
n
129
GLY
147
A
ARG
148
n
130
ARG
148
A
CYS
149
n
131
CYS
149
A
GLU
150
n
132
GLU
150
A
MET
151
n
133
MET
151
A
GLN
152
n
134
GLN
152
A
VAL
153
n
135
VAL
153
A
ASN
154
n
136
ASN
154
A
PHE
155
n
137
PHE
155
A
LYS
156
n
138
LYS
156
A
GLN
157
n
139
GLN
157
A
ARG
158
n
140
ARG
158
A
LYS
159
n
141
LYS
159
A
VAL
160
n
142
VAL
160
A
MET
161
n
143
MET
161
A
PRO
162
n
144
PRO
162
A
PRO
163
n
145
PRO
163
A
ASP
164
n
146
ASP
164
A
ARG
165
n
147
ARG
165
A
ALA
166
n
148
ALA
166
A
ARG
167
n
149
ARG
167
A
GLY
168
n
150
GLY
168
A
SER
169
n
151
SER
169
A
ILE
170
n
152
ILE
170
A
ALA
171
n
153
ALA
171
A
ARG
172
n
154
ARG
172
A
THR
173
n
155
THR
173
A
TYR
174
n
156
TYR
174
A
LEU
175
n
157
LEU
175
A
TYR
176
n
158
TYR
176
A
MET
177
n
159
MET
177
A
SER
178
n
160
SER
178
A
GLN
179
n
161
GLN
179
A
GLU
180
n
162
GLU
180
A
TYR
181
n
163
TYR
181
A
GLY
182
n
164
GLY
182
A
PHE
183
n
165
PHE
183
A
GLN
184
n
166
GLN
184
A
LEU
185
n
167
LEU
185
A
SER
186
n
168
SER
186
A
LYS
187
n
169
LYS
187
A
GLN
188
n
170
GLN
188
A
GLN
189
n
171
GLN
189
A
GLN
190
n
172
GLN
190
A
GLN
191
n
173
GLN
191
A
LEU
192
n
174
LEU
192
A
MET
193
n
175
MET
193
A
GLN
194
n
176
GLN
194
A
ALA
195
n
177
ALA
195
A
TRP
196
n
178
TRP
196
A
ASN
197
n
179
ASN
197
A
LYS
198
n
180
LYS
198
A
SER
199
n
181
SER
199
A
TYR
200
n
182
TYR
200
A
PRO
201
n
183
PRO
201
A
VAL
202
n
184
VAL
202
A
ASP
203
n
185
ASP
203
A
GLU
204
n
186
GLU
204
A
TRP
205
n
187
TRP
205
A
GLU
206
n
188
GLU
206
A
CYS
207
n
189
CYS
207
A
THR
208
n
190
THR
208
A
ARG
209
n
191
ARG
209
A
ASP
210
n
192
ASP
210
A
ASP
211
n
193
ASP
211
A
ARG
212
n
194
ARG
212
A
ILE
213
n
195
ILE
213
A
ALA
214
n
196
ALA
214
A
LYS
215
n
197
LYS
215
A
ILE
216
n
198
ILE
216
A
GLN
217
n
199
GLN
217
A
GLY
218
n
200
GLY
218
A
ASN
219
n
201
ASN
219
A
HIS
220
n
202
HIS
220
A
ASN
221
n
203
ASN
221
A
PRO
222
n
204
PRO
222
A
PHE
223
n
205
PHE
223
A
VAL
224
n
206
VAL
224
A
GLN
225
n
207
GLN
225
A
GLN
226
n
208
GLN
226
A
SER
227
n
209
SER
227
A
CYS
228
n
210
CYS
228
A
GLN
229
n
211
GLN
229
A
THR
230
n
212
THR
230
A
GLN
231
n
213
GLN
231
A
ALA
19
n
1
ALA
19
B
PRO
20
n
2
PRO
20
B
PRO
21
n
3
PRO
21
B
SER
22
n
4
SER
22
B
SER
23
n
5
SER
23
B
PHE
24
n
6
PHE
24
B
SER
25
n
7
SER
25
B
ALA
26
n
8
ALA
26
B
ALA
27
n
9
ALA
27
B
LYS
28
n
10
LYS
28
B
GLN
29
n
11
GLN
29
B
GLN
30
n
12
GLN
30
B
ALA
31
n
13
ALA
31
B
VAL
32
n
14
VAL
32
B
LYS
33
n
15
LYS
33
B
ILE
34
n
16
ILE
34
B
TYR
35
n
17
TYR
35
B
GLN
36
n
18
GLN
36
B
ASP
37
n
19
ASP
37
B
HIS
38
n
20
HIS
38
B
PRO
39
n
21
PRO
39
B
ILE
40
n
22
ILE
40
B
SER
41
n
23
SER
41
B
PHE
42
n
24
PHE
42
B
TYR
43
n
25
TYR
43
B
CYS
44
n
26
CYS
44
B
GLY
45
n
27
GLY
45
B
CYS
46
n
28
CYS
46
B
ASP
47
n
29
ASP
47
B
ILE
48
n
30
ILE
48
B
GLU
49
n
31
GLU
49
B
TRP
50
n
32
TRP
50
B
GLN
51
n
33
GLN
51
B
GLY
52
n
34
GLY
52
B
LYS
53
n
35
LYS
53
B
LYS
54
n
36
LYS
54
B
GLY
55
n
37
GLY
55
B
ILE
56
n
38
ILE
56
B
PRO
57
n
39
PRO
57
B
ASN
58
n
40
ASN
58
B
LEU
59
n
41
LEU
59
B
GLU
60
n
42
GLU
60
B
THR
61
n
43
THR
61
B
CYS
62
n
44
CYS
62
B
GLY
63
n
45
GLY
63
B
TYR
64
n
46
TYR
64
B
GLN
65
n
47
GLN
65
B
VAL
66
n
48
VAL
66
B
ARG
67
n
49
ARG
67
B
LYS
68
n
50
LYS
68
B
GLN
69
n
51
GLN
69
B
GLN
70
n
52
GLN
70
B
THR
71
n
53
THR
71
B
ARG
72
n
54
ARG
72
B
ALA
73
n
55
ALA
73
B
SER
74
n
56
SER
74
B
ARG
75
n
57
ARG
75
B
ILE
76
n
58
ILE
76
B
GLU
77
n
59
GLU
77
B
TRP
78
n
60
TRP
78
B
GLU
79
n
61
GLU
79
B
ALA
80
n
62
ALA
80
B
VAL
81
n
63
VAL
81
B
VAL
82
n
64
VAL
82
B
PRO
83
n
65
PRO
83
B
ALA
84
n
66
ALA
84
B
TRP
85
n
67
TRP
85
B
GLN
86
n
68
GLN
86
B
PHE
87
n
69
PHE
87
B
GLY
88
n
70
GLY
88
B
HIS
89
n
71
HIS
89
B
HIS
90
n
72
HIS
90
B
ARG
91
n
73
ARG
91
B
GLN
92
n
74
GLN
92
B
CYS
93
n
75
CYS
93
B
TRP
94
n
76
TRP
94
B
GLN
95
n
77
GLN
95
B
LYS
96
n
78
LYS
96
B
GLY
97
n
79
GLY
97
B
GLY
98
n
80
GLY
98
B
ARG
99
n
81
ARG
99
B
LYS
100
n
82
LYS
100
B
ASN
101
n
83
ASN
101
B
CYS
102
n
84
CYS
102
B
SER
103
n
85
SER
103
B
LYS
104
n
86
LYS
104
B
ASN
105
n
87
ASN
105
B
ASP
106
n
88
ASP
106
B
GLN
107
n
89
GLN
107
B
GLN
108
n
90
GLN
108
B
PHE
109
n
91
PHE
109
B
ARG
110
n
92
ARG
110
B
LEU
111
n
93
LEU
111
B
MET
112
n
94
MET
112
B
GLU
113
n
95
GLU
113
B
ALA
114
n
96
ALA
114
B
ASP
115
n
97
ASP
115
B
LEU
116
n
98
LEU
116
B
HIS
117
n
99
HIS
117
B
ASN
118
n
100
ASN
118
B
LEU
119
n
101
LEU
119
B
THR
120
n
102
THR
120
B
PRO
121
n
103
PRO
121
B
ALA
122
n
104
ALA
122
B
ILE
123
n
105
ILE
123
B
GLY
124
n
106
GLY
124
B
GLU
125
n
107
GLU
125
B
VAL
126
n
108
VAL
126
B
ASN
127
n
109
ASN
127
B
GLY
128
n
110
GLY
128
B
ASP
129
n
111
ASP
129
B
ARG
130
n
112
ARG
130
B
SER
131
n
113
SER
131
B
ASN
132
n
114
ASN
132
B
PHE
133
n
115
PHE
133
B
ASN
134
n
116
ASN
134
B
PHE
135
n
117
PHE
135
B
SER
136
n
118
SER
136
B
GLN
137
n
119
GLN
137
B
TRP
138
n
120
TRP
138
B
ASN
139
n
121
ASN
139
B
GLY
140
n
122
GLY
140
B
VAL
141
n
123
VAL
141
B
ASP
142
n
124
ASP
142
B
GLY
143
n
125
GLY
143
B
VAL
144
n
126
VAL
144
B
SER
145
n
127
SER
145
B
TYR
146
n
128
TYR
146
B
GLY
147
n
129
GLY
147
B
ARG
148
n
130
ARG
148
B
CYS
149
n
131
CYS
149
B
GLU
150
n
132
GLU
150
B
MET
151
n
133
MET
151
B
GLN
152
n
134
GLN
152
B
VAL
153
n
135
VAL
153
B
ASN
154
n
136
ASN
154
B
PHE
155
n
137
PHE
155
B
LYS
156
n
138
LYS
156
B
GLN
157
n
139
GLN
157
B
ARG
158
n
140
ARG
158
B
LYS
159
n
141
LYS
159
B
VAL
160
n
142
VAL
160
B
MET
161
n
143
MET
161
B
PRO
162
n
144
PRO
162
B
PRO
163
n
145
PRO
163
B
ASP
164
n
146
ASP
164
B
ARG
165
n
147
ARG
165
B
ALA
166
n
148
ALA
166
B
ARG
167
n
149
ARG
167
B
GLY
168
n
150
GLY
168
B
SER
169
n
151
SER
169
B
ILE
170
n
152
ILE
170
B
ALA
171
n
153
ALA
171
B
ARG
172
n
154
ARG
172
B
THR
173
n
155
THR
173
B
TYR
174
n
156
TYR
174
B
LEU
175
n
157
LEU
175
B
TYR
176
n
158
TYR
176
B
MET
177
n
159
MET
177
B
SER
178
n
160
SER
178
B
GLN
179
n
161
GLN
179
B
GLU
180
n
162
GLU
180
B
TYR
181
n
163
TYR
181
B
GLY
182
n
164
GLY
182
B
PHE
183
n
165
PHE
183
B
GLN
184
n
166
GLN
184
B
LEU
185
n
167
LEU
185
B
SER
186
n
168
SER
186
B
LYS
187
n
169
LYS
187
B
GLN
188
n
170
GLN
188
B
GLN
189
n
171
GLN
189
B
GLN
190
n
172
GLN
190
B
GLN
191
n
173
GLN
191
B
LEU
192
n
174
LEU
192
B
MET
193
n
175
MET
193
B
GLN
194
n
176
GLN
194
B
ALA
195
n
177
ALA
195
B
TRP
196
n
178
TRP
196
B
ASN
197
n
179
ASN
197
B
LYS
198
n
180
LYS
198
B
SER
199
n
181
SER
199
B
TYR
200
n
182
TYR
200
B
PRO
201
n
183
PRO
201
B
VAL
202
n
184
VAL
202
B
ASP
203
n
185
ASP
203
B
GLU
204
n
186
GLU
204
B
TRP
205
n
187
TRP
205
B
GLU
206
n
188
GLU
206
B
CYS
207
n
189
CYS
207
B
THR
208
n
190
THR
208
B
ARG
209
n
191
ARG
209
B
ASP
210
n
192
ASP
210
B
ASP
211
n
193
ASP
211
B
ARG
212
n
194
ARG
212
B
ILE
213
n
195
ILE
213
B
ALA
214
n
196
ALA
214
B
LYS
215
n
197
LYS
215
B
ILE
216
n
198
ILE
216
B
GLN
217
n
199
GLN
217
B
GLY
218
n
200
GLY
218
B
ASN
219
n
201
ASN
219
B
HIS
220
n
202
HIS
220
B
ASN
221
n
203
ASN
221
B
PRO
222
n
204
PRO
222
B
PHE
223
n
205
PHE
223
B
VAL
224
n
206
VAL
224
B
GLN
225
n
207
GLN
225
B
GLN
226
n
208
GLN
226
B
SER
227
n
209
SER
227
B
CYS
228
n
210
CYS
228
B
n
211
229
B
n
212
230
B
n
213
231
B
author_defined_assembly
3
trimeric
author_defined_assembly
4
tetrameric
C
HOH
461
J
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
B
GLU
79
G
OE1
GLU
61
1_555
93.5
C
HOH
461
J
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
B
ASN
127
G
OD1
ASN
109
1_555
87.9
B
GLU
79
G
OE1
GLU
61
1_555
B
CA
300
I
CA
CA
1_555
B
ASN
127
G
OD1
ASN
109
1_555
75.2
C
HOH
461
J
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
443
P
O
HOH
1_555
159.9
B
GLU
79
G
OE1
GLU
61
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
443
P
O
HOH
1_555
102.3
B
ASN
127
G
OD1
ASN
109
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
443
P
O
HOH
1_555
84.1
C
HOH
461
J
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
718
P
O
HOH
1_555
84.0
B
GLU
79
G
OE1
GLU
61
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
718
P
O
HOH
1_555
88.9
B
ASN
127
G
OD1
ASN
109
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
718
P
O
HOH
1_555
161.7
B
HOH
443
P
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
B
HOH
718
P
O
HOH
1_555
108.5
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
G
HOH
720
M
O
HOH
1_555
75.2
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
A
GLU
79
F
OE1
GLU
61
1_555
158.3
G
HOH
720
M
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
A
GLU
79
F
OE1
GLU
61
1_555
84.0
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
A
ASN
127
F
OD1
ASN
109
1_555
92.9
G
HOH
720
M
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
A
ASN
127
F
OD1
ASN
109
1_555
90.8
A
GLU
79
F
OE1
GLU
61
1_555
A
CA
300
H
CA
CA
1_555
A
ASN
127
F
OD1
ASN
109
1_555
93.6
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
420
O
O
HOH
1_555
85.5
G
HOH
720
M
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
420
O
O
HOH
1_555
160.4
A
GLU
79
F
OE1
GLU
61
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
420
O
O
HOH
1_555
115.5
A
ASN
127
F
OD1
ASN
109
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
420
O
O
HOH
1_555
87.1
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
92.1
G
HOH
720
M
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
84.4
A
GLU
79
F
OE1
GLU
61
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
79.5
A
ASN
127
F
OD1
ASN
109
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
172.0
A
HOH
420
O
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
99.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
51
F
N
GLN
33
A
O
LYS
54
F
O
LYS
36
A
N
GLU
79
F
N
GLU
61
A
O
THR
120
F
O
THR
102
A
N
ASN
134
F
N
ASN
116
A
O
VAL
160
F
O
VAL
142
A
O
LYS
159
F
O
LYS
141
A
N
ASN
154
F
N
ASN
136
A
O
VAL
153
F
O
VAL
135
A
N
VAL
144
F
N
VAL
126
B
N
GLU
49
G
N
GLU
31
B
O
ILE
56
G
O
ILE
38
B
N
GLU
79
G
N
GLU
61
B
O
THR
120
G
O
THR
102
B
N
ASN
134
G
N
ASN
116
B
O
VAL
160
G
O
VAL
142
B
O
MET
161
G
O
MET
143
B
N
GLN
152
G
N
GLN
134
B
O
VAL
153
G
O
VAL
135
B
N
VAL
144
G
N
VAL
126
1
B
GLN
229
G
GLN
211
1
Y
1
B
THR
230
G
THR
212
1
Y
1
B
GLN
231
G
GLN
213
1
Y
1
E
DA
4
0.057
SIDE CHAIN
1
E
DT
5
0.074
SIDE CHAIN
1
G
DG
7
0.054
SIDE CHAIN
1
F
DG
11
0.050
SIDE CHAIN
1
F
DT
13
0.063
SIDE CHAIN
1
-3.66
0.50
120.30
116.64
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
172
172
172
N
1
G
G
P
OP3
DG
DG
7
7
-0.086
0.012
1.607
1.521
N
1
A
LYS
68
-168.12
5.30
1
A
ASN
105
-110.39
-89.63
1
A
ASP
106
-31.70
114.21
1
A
SER
131
42.59
-138.31
1
A
ASP
142
-153.24
61.75
1
A
SER
145
-127.61
-169.73
1
B
TRP
50
-69.12
82.57
1
B
LEU
59
-48.81
-19.08
1
B
LYS
68
-147.65
-47.31
1
B
LYS
104
-175.98
-38.40
1
B
SER
131
51.36
-129.59
1
B
TRP
138
-175.17
-177.21
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA-VVN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
36.4
6.45
0.00
3.92
-0.99
0.00
-5.47
0.26
0.006
0.191
2.30
19.78
1616
21279
20729
7.8
97.5
RANDOM
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
SeMet-Vvn
Engh & Huber
FLAT MODEL
41.7232
0.332758
0.35
0.25
5.00
0.22
0.17
2.30
19.78
328
4425
2
645
3450
0.011
1.4
21.8
1.14
1.45
1.50
2.29
2.00
2.09
2.00
3.04
2.50
0.263
0.016
0.201
2.44
264
3025
953
6
8.0
19.5
2.3
40
1OUP
21213
21165
0
0
0.073
1
20.2
7.5
100
2.3
2.38
4.4
0.282
100
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA
1
N
N
1
N
N
2
N
N
3
N
N
1
N
N
4
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
Two protein/DNA complexes per asymmetry uint. Chains A,E,F are enzyme/product complex. Chains B,C,D are enzyme/substrate complex
A
SER
23
F
SER
5
HELX_P
A
TYR
35
F
TYR
17
1
1
13
A
GLN
69
F
GLN
51
HELX_P
A
SER
74
F
SER
56
1
2
6
A
PRO
83
F
PRO
65
HELX_P
A
HIS
89
F
HIS
71
1
3
7
A
ARG
91
F
ARG
73
HELX_P
A
ASN
105
F
ASN
87
1
4
15
A
ASP
106
F
ASP
88
HELX_P
A
GLU
113
F
GLU
95
1
5
8
A
ALA
114
F
ALA
96
HELX_P
A
HIS
117
F
HIS
99
5
6
4
A
GLY
124
F
GLY
106
HELX_P
A
SER
131
F
SER
113
1
7
8
A
PRO
163
F
PRO
145
HELX_P
A
GLY
182
F
GLY
164
1
8
20
A
SER
186
F
SER
168
HELX_P
A
TYR
200
F
TYR
182
1
9
15
A
ASP
203
F
ASP
185
HELX_P
A
GLY
218
F
GLY
200
1
10
16
A
ASN
221
F
ASN
203
HELX_P
A
GLN
229
F
GLN
211
1
11
9
B
SER
23
G
SER
5
HELX_P
B
TYR
35
G
TYR
17
1
12
13
B
GLN
69
G
GLN
51
HELX_P
B
SER
74
G
SER
56
1
13
6
B
PRO
83
G
PRO
65
HELX_P
B
HIS
89
G
HIS
71
1
14
7
B
ARG
91
G
ARG
73
HELX_P
B
ASP
106
G
ASP
88
1
15
16
B
ASP
106
G
ASP
88
HELX_P
B
ASP
115
G
ASP
97
1
16
10
B
GLY
124
G
GLY
106
HELX_P
B
SER
131
G
SER
113
1
17
8
B
PRO
163
G
PRO
145
HELX_P
B
GLY
182
G
GLY
164
1
18
20
B
SER
186
G
SER
168
HELX_P
B
TYR
200
G
TYR
182
1
19
15
B
ASP
203
G
ASP
185
HELX_P
B
GLY
218
G
GLY
200
1
20
16
B
ASN
221
G
ASN
203
HELX_P
B
GLN
226
G
GLN
208
1
21
6
disulf
2.037
A
CYS
44
F
SG
CYS
26
1_555
A
CYS
149
F
SG
CYS
131
1_555
disulf
2.042
A
CYS
46
F
SG
CYS
28
1_555
A
CYS
62
F
SG
CYS
44
1_555
disulf
2.037
A
CYS
93
F
SG
CYS
75
1_555
A
CYS
102
F
SG
CYS
84
1_555
disulf
2.015
A
CYS
207
F
SG
CYS
189
1_555
A
CYS
228
F
SG
CYS
210
1_555
disulf
2.037
B
CYS
44
G
SG
CYS
26
1_555
B
CYS
149
G
SG
CYS
131
1_555
disulf
2.032
B
CYS
46
G
SG
CYS
28
1_555
B
CYS
62
G
SG
CYS
44
1_555
disulf
2.038
B
CYS
93
G
SG
CYS
75
1_555
B
CYS
102
G
SG
CYS
84
1_555
disulf
2.029
B
CYS
207
G
SG
CYS
189
1_555
B
CYS
228
G
SG
CYS
210
1_555
metalc
2.528
C
HOH
461
J
O
HOH
1_555
B
CA
300
I
CA
CA
1_555
metalc
2.214
G
DG
7
D
OP3
DG
1
1_555
A
CA
300
H
CA
CA
1_555
metalc
2.065
G
HOH
720
M
O
HOH
1_555
A
CA
300
H
CA
CA
1_555
metalc
2.071
A
GLU
79
F
OE1
GLU
61
1_555
A
CA
300
H
CA
CA
1_555
metalc
2.326
A
ASN
127
F
OD1
ASN
109
1_555
A
CA
300
H
CA
CA
1_555
metalc
2.567
A
CA
300
H
CA
CA
1_555
A
HOH
420
O
O
HOH
1_555
metalc
2.340
A
CA
300
H
CA
CA
1_555
A
HOH
719
O
O
HOH
1_555
metalc
2.245
B
GLU
79
G
OE1
GLU
61
1_555
B
CA
300
I
CA
CA
1_555
metalc
2.361
B
ASN
127
G
OD1
ASN
109
1_555
B
CA
300
I
CA
CA
1_555
metalc
2.416
B
CA
300
I
CA
CA
1_555
B
HOH
443
P
O
HOH
1_555
metalc
2.526
B
CA
300
I
CA
CA
1_555
B
HOH
718
P
O
HOH
1_555
hydrog
WATSON-CRICK
C
DG
1
A
N1
DG
1
1_555
D
DC
16
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
1
A
N2
DG
1
1_555
D
DC
16
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
1
A
O6
DG
1
1_555
D
DC
16
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DC
2
A
N3
DC
2
1_555
D
DG
15
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
2
A
N4
DC
2
1_555
D
DG
15
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
2
A
O2
DC
2
1_555
D
DG
15
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DG
3
A
N1
DG
3
1_555
D
DC
14
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
3
A
N2
DG
3
1_555
D
DC
14
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
3
A
O6
DG
3
1_555
D
DC
14
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
4
1_555
D
DT
13
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
4
1_555
D
DT
13
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DT
5
A
N3
DT
5
1_555
D
DA
12
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
5
A
O4
DT
5
1_555
D
DA
12
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N3
DC
6
1_555
D
DG
11
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N4
DC
6
1_555
D
DG
11
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
6
A
O2
DC
6
1_555
D
DG
11
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N1
DG
7
1_555
D
DC
10
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N2
DG
7
1_555
D
DC
10
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
7
A
O6
DG
7
1_555
D
DC
10
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DC
8
A
N3
DC
8
1_555
D
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
8
A
N4
DC
8
1_555
D
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
8
A
O2
DC
8
1_555
D
DG
9
B
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DG
1
C
N1
DG
1
1_555
F
DC
16
E
N3
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
1
C
N2
DG
1
1_555
F
DC
16
E
O2
DC
8
1_555
hydrog
WATSON-CRICK
E
DG
1
C
O6
DG
1
1_555
F
DC
16
E
N4
DC
8
1_555
hydrog
WATSON-CRICK
E
DC
2
C
N3
DC
2
1_555
F
DG
15
E
N1
DG
7
1_555
hydrog
WATSON-CRICK
E
DC
2
C
N4
DC
2
1_555
F
DG
15
E
O6
DG
7
1_555
hydrog
WATSON-CRICK
E
DC
2
C
O2
DC
2
1_555
F
DG
15
E
N2
DG
7
1_555
hydrog
WATSON-CRICK
E
DG
3
C
N1
DG
3
1_555
F
DC
14
E
N3
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
3
C
N2
DG
3
1_555
F
DC
14
E
O2
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
3
C
O6
DG
3
1_555
F
DC
14
E
N4
DC
6
1_555
hydrog
WATSON-CRICK
E
DA
4
C
N1
DA
4
1_555
F
DT
13
E
N3
DT
5
1_555
hydrog
WATSON-CRICK
E
DA
4
C
N6
DA
4
1_555
F
DT
13
E
O4
DT
5
1_555
hydrog
WATSON-CRICK
E
DT
5
C
N3
DT
5
1_555
F
DA
12
E
N1
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
5
C
O4
DT
5
1_555
F
DA
12
E
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DC
6
C
N3
DC
6
1_555
F
DG
11
E
N1
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
6
C
N4
DC
6
1_555
F
DG
11
E
O6
DG
3
1_555
hydrog
WATSON-CRICK
E
DC
6
C
O2
DC
6
1_555
F
DG
11
E
N2
DG
3
1_555
hydrog
WATSON-CRICK
G
DG
7
D
N1
DG
1
1_555
F
DC
10
E
N3
DC
2
1_555
hydrog
WATSON-CRICK
G
DG
7
D
N2
DG
1
1_555
F
DC
10
E
O2
DC
2
1_555
hydrog
WATSON-CRICK
G
DG
7
D
O6
DG
1
1_555
F
DC
10
E
N4
DC
2
1_555
hydrog
WATSON-CRICK
G
DC
8
D
N3
DC
2
1_555
F
DG
9
E
N1
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
8
D
N4
DC
2
1_555
F
DG
9
E
O6
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
8
D
O2
DC
2
1_555
F
DG
9
E
N2
DG
1
1_555
HYDROLASE/DNA
Non-specific endonuclease, beta-beta-alpha metal motif, HYDROLASE-DNA COMPLEX
Q8DCA6_VIBVU
UNP
4
19
Q8DCA6
APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEHVVPAWQFGHHRQCWQKGG
RKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPQTELRGSIARTYLYMS
QEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ
1OUP
PDB
1
1OUP
1OUP
PDB
2
1OUP
1OUP
PDB
3
1OUP
19
231
1OUP
19
231
Q8DCA6
A
1
1
213
19
231
1OUP
19
231
Q8DCA6
B
1
1
213
1
8
1OUP
1
8
1OUP
C
2
1
8
9
16
1OUP
9
16
1OUP
D
2
1
8
1
6
1OUP
1
6
1OUP
E
3
1
6
7
8
1OUP
7
8
1OUP
G
4
1
2
9
16
1OUP
9
16
1OUP
F
2
1
8
1
HIS
engineered mutation
ALA
80
1OUP
A
Q8DCA6
UNP
80
62
1
GLN
SEE REMARK 999
PRO
163
1OUP
A
Q8DCA6
UNP
163
145
1
THR
SEE REMARK 999
ASP
164
1OUP
A
Q8DCA6
UNP
164
146
1
GLU
SEE REMARK 999
ARG
165
1OUP
A
Q8DCA6
UNP
165
147
1
LEU
SEE REMARK 999
ALA
166
1OUP
A
Q8DCA6
UNP
166
148
2
HIS
engineered mutation
ALA
80
1OUP
B
Q8DCA6
UNP
80
62
2
GLN
SEE REMARK 999
PRO
163
1OUP
B
Q8DCA6
UNP
163
145
2
THR
SEE REMARK 999
ASP
164
1OUP
B
Q8DCA6
UNP
164
146
2
GLU
SEE REMARK 999
ARG
165
1OUP
B
Q8DCA6
UNP
165
147
2
LEU
SEE REMARK 999
ALA
166
1OUP
B
Q8DCA6
UNP
166
148
2
2
4
2
2
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
48
F
ILE
30
A
GLN
51
F
GLN
33
A
LYS
54
F
LYS
36
A
PRO
57
F
PRO
39
A
ILE
76
F
ILE
58
A
ALA
80
F
ALA
62
A
LEU
119
F
LEU
101
A
ILE
123
F
ILE
105
A
ASN
134
F
ASN
116
A
PHE
135
F
PHE
117
A
LYS
159
F
LYS
141
A
MET
161
F
MET
143
A
CYS
149
F
CYS
131
A
ASN
154
F
ASN
136
A
VAL
144
F
VAL
126
A
TYR
146
F
TYR
128
B
ILE
48
G
ILE
30
B
GLU
49
G
GLU
31
B
ILE
56
G
ILE
38
B
PRO
57
G
PRO
39
B
ILE
76
G
ILE
58
B
ALA
80
G
ALA
62
B
LEU
119
G
LEU
101
B
ILE
123
G
ILE
105
B
ASN
134
G
ASN
116
B
PHE
135
G
PHE
117
B
LYS
159
G
LYS
141
B
MET
161
G
MET
143
B
CYS
149
G
CYS
131
B
ASN
154
G
ASN
136
B
VAL
144
G
VAL
126
B
TYR
146
G
TYR
128
BINDING SITE FOR RESIDUE CA A 300
A
CA
300
Software
6
BINDING SITE FOR RESIDUE CA B 300
B
CA
300
Software
6
A
GLU
79
F
GLU
61
6
1_555
A
ASN
127
F
ASN
109
6
1_555
A
HOH
420
O
HOH
6
1_555
A
HOH
719
O
HOH
6
1_555
G
DG
7
D
DG
1
6
1_555
G
HOH
720
M
HOH
6
1_555
B
GLU
79
G
GLU
61
6
1_555
B
ASN
127
G
ASN
109
6
1_555
B
HOH
443
P
HOH
6
1_555
B
HOH
718
P
HOH
6
1_555
C
DG
7
A
DG
7
6
1_555
C
HOH
461
J
HOH
6
1_555
4
P 1 21 1