1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Chin, K.-H.
Chou, S.-H.
Chen, F.-M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
N
84
N
N
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
S
C
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
Y
166
N
C
N
167
N
C
N
168
N
O
Y
169
N
C
N
170
N
N
Y
171
N
C
N
172
N
O
Y
173
N
C
Y
174
N
O
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
C
N
179
N
C
N
180
N
O
Y
181
N
N
Y
182
N
C
Y
183
N
C
Y
184
N
C
Y
185
N
C
N
186
N
C
N
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
R
C
N
218
N
O
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
doub
Y
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
Y
178
N
sing
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
Y
182
N
sing
Y
183
N
doub
Y
184
N
sing
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
doub
N
193
N
sing
Y
194
N
doub
Y
195
N
sing
Y
196
N
sing
Y
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
31
2622
10.1093/NAR/GKG353
12736312
Solution Structure of the Actd-5'-Ccgtt(3)Gtgg-3' Complex: Drug Interaction with Tandem G.T Mismatches and Hairpin Loop Backbone.
2003
10.2210/pdb1ovf/pdb
pdb_00001ovf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
3371.193
(5'-D(*CP*CP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3')
1
syn
polymer
1259.447
ACTINOMYCIN D
1
syn
polymer
DACTINOMYCIN
no
no
(DC)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DT)(DG)(DG)
CCGTTTTGTGG
A
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-12.382
1
19
A
1
A
11
-1.306
A_DC1:DG11_A
1
-17.717
0.798
0.345
-0.288
3.186
1
19
A
2
A
10
-0.056
A_DC2:DG10_A
2
-13.532
0.047
-0.290
-0.038
21.881
1
28
A
3
A
9
1.244
A_DG3:DT9_A
3
10.928
-1.617
0.901
-0.381
-14.190
1
28
A
4
A
8
-6.797
A_DT4:DG8_A
4
8.954
1.486
0.559
-0.389
2.143
30.982
A
A
1
2
12.952
A
A
11
10
2.768
6.693
-0.179
-1.360
AA_DC1DC2:DG10DG11_AA
1
11.852
-22.935
27.898
-3.568
2.148
2.743
21.338
A
A
2
3
36.212
A
A
10
9
2.948
11.973
0.272
1.529
AA_DC2DG3:DT9DG10_AA
2
-10.067
30.448
14.558
-0.964
-5.016
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
pdbx_validate_polymer_linkage
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Advisory
Atomic model
Data collection
Database references
Derived calculations
1
0
2003-05-27
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
2
0
2023-11-15
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_atom_id
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
RCSB
Y
RCSB
2003-03-26
REL
1890
STREPTOMYCES ANTIBIOTICUS
sample
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXZ)
Actinomycin D
Polypeptide
10
2D NOESY
DQF-COSY
2D TOCSY
DISTANCE GEOMETRY, SIMULATED ANNEALING, MOLECULAR DYNAMICS
1
10MM PHOSPHATE BUFFER
20MM NACL, 90% H2O, 10% D2O
10MM PHOSPHATE BUFFER
20MM NACL
refinement
DGII
structure solution
VNMR
structure solution
Felix
structure solution
DGII
600
Varian
DC
1
n
1
DC
1
A
DC
2
n
2
DC
2
A
DG
3
n
3
DG
3
A
DT
4
n
4
DT
4
A
DT
5
n
5
DT
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DG
8
n
8
DG
8
A
DT
9
n
9
DT
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
THR
1
n
1
THR
1
B
DVA
2
n
2
DVA
2
B
PRO
3
n
3
PRO
3
B
SAR
4
n
4
SAR
4
B
MVA
5
n
5
MVA
5
B
PXZ
6
n
6
PXZ
6
B
THR
7
n
7
THR
7
B
DVA
8
n
8
DVA
8
B
PRO
9
n
9
PRO
9
B
SAR
10
n
10
SAR
10
B
MVA
11
n
11
MVA
11
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
2
0.133
SIDE CHAIN
1
A
DT
5
0.081
SIDE CHAIN
1
A
DT
7
0.072
SIDE CHAIN
1
A
DG
8
0.090
SIDE CHAIN
2
A
DC
2
0.139
SIDE CHAIN
2
A
DT
5
0.081
SIDE CHAIN
2
A
DT
7
0.069
SIDE CHAIN
2
A
DG
8
0.088
SIDE CHAIN
3
A
DC
1
0.065
SIDE CHAIN
3
A
DC
2
0.160
SIDE CHAIN
3
A
DT
5
0.084
SIDE CHAIN
3
A
DT
7
0.074
SIDE CHAIN
3
A
DG
8
0.089
SIDE CHAIN
4
A
DC
2
0.119
SIDE CHAIN
4
A
DT
6
0.073
SIDE CHAIN
4
A
DT
7
0.064
SIDE CHAIN
4
A
DG
8
0.053
SIDE CHAIN
5
A
DC
2
0.115
SIDE CHAIN
5
A
DT
5
0.077
SIDE CHAIN
5
A
DT
7
0.062
SIDE CHAIN
5
A
DG
8
0.073
SIDE CHAIN
6
A
DC
2
0.139
SIDE CHAIN
6
A
DT
5
0.083
SIDE CHAIN
6
A
DT
6
0.076
SIDE CHAIN
6
A
DT
7
0.071
SIDE CHAIN
6
A
DG
8
0.066
SIDE CHAIN
7
A
DC
2
0.120
SIDE CHAIN
7
A
DT
5
0.072
SIDE CHAIN
7
A
DT
6
0.081
SIDE CHAIN
7
A
DT
7
0.071
SIDE CHAIN
7
A
DG
8
0.064
SIDE CHAIN
8
A
DC
2
0.131
SIDE CHAIN
8
A
DT
5
0.074
SIDE CHAIN
8
A
DT
6
0.075
SIDE CHAIN
8
A
DT
7
0.065
SIDE CHAIN
8
A
DG
8
0.063
SIDE CHAIN
9
A
DC
2
0.129
SIDE CHAIN
9
A
DT
7
0.076
SIDE CHAIN
9
A
DG
8
0.071
SIDE CHAIN
10
A
DC
2
0.142
SIDE CHAIN
10
A
DT
5
0.093
SIDE CHAIN
10
A
DT
6
0.090
SIDE CHAIN
10
A
DT
7
0.080
SIDE CHAIN
10
A
DG
8
0.093
SIDE CHAIN
1
6.41
0.30
108.30
114.71
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.05
0.30
108.30
110.35
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
3.75
0.30
108.30
112.05
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.12
0.30
108.30
112.42
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-3.65
0.60
122.90
119.25
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
5.25
0.30
108.30
113.55
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
2
6.65
0.30
108.30
114.95
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
2.30
0.30
108.30
110.60
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
5.06
0.30
108.30
113.36
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
2
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
3.47
0.30
108.30
111.77
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
3.24
0.30
108.30
111.54
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
6.13
0.30
108.30
114.43
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
2.82
0.30
108.30
111.12
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
4.09
0.30
108.30
112.39
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
-3.68
0.60
122.90
119.22
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
3
5.41
0.30
108.30
113.71
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
3
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
3.26
0.30
108.30
111.56
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
4.71
0.30
108.30
113.01
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
4.48
0.30
108.30
112.78
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
4
4.33
0.30
108.30
112.63
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
4
6.17
0.30
108.30
114.47
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
-3.71
0.60
122.90
119.19
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
4
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
4
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
4
3.13
0.30
108.30
111.43
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
5
5.22
0.30
108.30
113.52
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
4.08
0.30
108.30
112.38
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
4.25
0.30
108.30
112.55
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
5
4.90
0.30
108.30
113.20
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
-3.68
0.60
122.90
119.22
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
5
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
5
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
5
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
6
3.75
0.30
108.30
112.05
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
4.23
0.30
108.30
112.53
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
6
4.26
0.30
108.30
112.56
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
6
4.75
0.30
108.30
113.05
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
5.82
0.30
108.30
114.12
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
3.95
0.30
108.30
112.25
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
-3.79
0.60
122.90
119.11
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
6
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
6
3.36
0.30
108.30
111.66
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
6
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
7
5.42
0.30
108.30
113.72
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
4.51
0.30
108.30
112.81
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
7
4.24
0.30
108.30
112.54
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
7
4.56
0.30
108.30
112.86
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
7
6.43
0.30
108.30
114.73
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
3.65
0.30
108.30
111.95
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
7
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
7
3.58
0.30
108.30
111.88
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
8
4.49
0.30
108.30
112.79
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
4.70
0.30
108.30
113.00
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
8
4.32
0.30
108.30
112.62
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
8
4.52
0.30
108.30
112.82
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
8
6.01
0.30
108.30
114.31
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
8
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
-3.68
0.60
122.90
119.22
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
8
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
8
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
8
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
9
3.27
0.30
108.30
111.57
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
4.21
0.30
108.30
112.51
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
9
4.00
0.30
108.30
112.30
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
9
4.81
0.30
108.30
113.11
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
9
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
9
3.70
0.30
108.30
112.00
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
9
3.37
0.30
108.30
111.67
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
10
6.01
0.30
108.30
114.31
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
10
4.41
0.30
108.30
112.71
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
10
-3.81
0.60
122.90
119.09
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
10
4.54
0.30
108.30
112.84
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
10
7.10
0.30
108.30
115.40
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
10
-3.85
0.60
122.90
119.05
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
10
4.02
0.30
108.30
112.32
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
-4.05
0.60
122.90
118.85
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
10
1.97
0.30
108.30
110.27
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
10
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
B
DVA
8
59.54
-109.54
2
B
DVA
8
59.09
-109.43
NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex
1
N
N
2
N
N
covale
1.337
both
B
THR
1
B
C
THR
1
1_555
B
DVA
2
B
N
DVA
2
1_555
covale
1.374
one
B
THR
1
B
OG1
THR
1
1_555
B
MVA
5
B
C
MVA
5
1_555
covale
1.343
one
B
THR
1
B
N
THR
1
1_555
B
PXZ
6
B
C0
PXZ
6
1_555
covale
1.347
both
B
DVA
2
B
C
DVA
2
1_555
B
PRO
3
B
N
PRO
3
1_555
covale
1.351
both
B
PRO
3
B
C
PRO
3
1_555
B
SAR
4
B
N
SAR
4
1_555
covale
1.352
both
B
SAR
4
B
C
SAR
4
1_555
B
MVA
5
B
N
MVA
5
1_555
covale
1.345
one
B
PXZ
6
B
C0'
PXZ
6
1_555
B
THR
7
B
N
THR
7
1_555
covale
1.339
both
B
THR
7
B
C
THR
7
1_555
B
DVA
8
B
N
DVA
8
1_555
covale
1.380
one
B
THR
7
B
OG1
THR
7
1_555
B
MVA
11
B
C
MVA
11
1_555
covale
1.344
both
B
DVA
8
B
C
DVA
8
1_555
B
PRO
9
B
N
PRO
9
1_555
covale
1.349
both
B
PRO
9
B
C
PRO
9
1_555
B
SAR
10
B
N
SAR
10
1_555
covale
1.348
both
B
SAR
10
B
C
SAR
10
1_555
B
MVA
11
B
N
MVA
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
11
A
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
11
A
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
11
A
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
10
A
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
10
A
N2
DG
10
1_555
hydrog
TYPE_28_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DT
9
A
O2
DT
9
1_555
hydrog
TYPE_28_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DT
9
A
N3
DT
9
1_555
hydrog
TYPE_28_PAIR
A
DT
4
A
N3
DT
4
1_555
A
DG
8
A
O6
DG
8
1_555
hydrog
TYPE_28_PAIR
A
DT
4
A
O2
DT
4
1_555
A
DG
8
A
N1
DG
8
1_555
hydrog
TYPE_28_PAIR
A
DT
5
A
N3
DT
5
1_555
A
DG
8
A
O6
DG
8
1_555
hydrog
TYPE_28_PAIR
A
DT
5
A
O2
DT
5
1_555
A
DG
8
A
N1
DG
8
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, MISMATCH, DNA-ANTIBIOTIC COMPLEX
B
DVA
2
B
DVA
2
1
B
PRO
3
B
PRO
3
2.89
B
PRO
3
B
PRO
3
1
B
SAR
4
B
SAR
4
2.71
B
DVA
8
B
DVA
8
1
B
PRO
9
B
PRO
9
4.65
B
PRO
9
B
PRO
9
1
B
SAR
10
B
SAR
10
-8.26
B
DVA
2
B
DVA
2
2
B
PRO
3
B
PRO
3
2.87
B
PRO
3
B
PRO
3
2
B
SAR
4
B
SAR
4
3.04
B
DVA
8
B
DVA
8
2
B
PRO
9
B
PRO
9
4.79
B
PRO
9
B
PRO
9
2
B
SAR
10
B
SAR
10
-8.38
B
DVA
2
B
DVA
2
3
B
PRO
3
B
PRO
3
4.15
B
PRO
3
B
PRO
3
3
B
SAR
4
B
SAR
4
0.06
B
DVA
8
B
DVA
8
3
B
PRO
9
B
PRO
9
3.40
B
PRO
9
B
PRO
9
3
B
SAR
10
B
SAR
10
-7.33
B
DVA
2
B
DVA
2
4
B
PRO
3
B
PRO
3
4.07
B
PRO
3
B
PRO
3
4
B
SAR
4
B
SAR
4
-2.81
B
DVA
8
B
DVA
8
4
B
PRO
9
B
PRO
9
9.60
B
PRO
9
B
PRO
9
4
B
SAR
10
B
SAR
10
-10.63
B
DVA
2
B
DVA
2
5
B
PRO
3
B
PRO
3
2.42
B
PRO
3
B
PRO
3
5
B
SAR
4
B
SAR
4
-2.89
B
DVA
8
B
DVA
8
5
B
PRO
9
B
PRO
9
6.08
B
PRO
9
B
PRO
9
5
B
SAR
10
B
SAR
10
-8.35
B
DVA
2
B
DVA
2
6
B
PRO
3
B
PRO
3
2.64
B
PRO
3
B
PRO
3
6
B
SAR
4
B
SAR
4
-0.67
B
DVA
8
B
DVA
8
6
B
PRO
9
B
PRO
9
3.87
B
PRO
9
B
PRO
9
6
B
SAR
10
B
SAR
10
-7.99
B
DVA
2
B
DVA
2
7
B
PRO
3
B
PRO
3
2.42
B
PRO
3
B
PRO
3
7
B
SAR
4
B
SAR
4
-3.36
B
DVA
8
B
DVA
8
7
B
PRO
9
B
PRO
9
5.97
B
PRO
9
B
PRO
9
7
B
SAR
10
B
SAR
10
-8.61
B
DVA
2
B
DVA
2
8
B
PRO
3
B
PRO
3
2.20
B
PRO
3
B
PRO
3
8
B
SAR
4
B
SAR
4
-3.28
B
DVA
8
B
DVA
8
8
B
PRO
9
B
PRO
9
6.03
B
PRO
9
B
PRO
9
8
B
SAR
10
B
SAR
10
-8.74
B
DVA
2
B
DVA
2
9
B
PRO
3
B
PRO
3
2.67
B
PRO
3
B
PRO
3
9
B
SAR
4
B
SAR
4
-3.87
B
DVA
8
B
DVA
8
9
B
PRO
9
B
PRO
9
5.31
B
PRO
9
B
PRO
9
9
B
SAR
10
B
SAR
10
-7.76
B
DVA
2
B
DVA
2
10
B
PRO
3
B
PRO
3
4.51
B
PRO
3
B
PRO
3
10
B
SAR
4
B
SAR
4
-0.15
B
DVA
8
B
DVA
8
10
B
PRO
9
B
PRO
9
3.58
B
PRO
9
B
PRO
9
10
B
SAR
10
B
SAR
10
-7.03
1OVF
PDB
1
1OVF
NOR00228
NOR
2
NOR00228
1
11
1OVF
1
11
1OVF
A
1
1
11
1
11
1OVF
1
11
NOR00228
B
2
1
11
BINDING SITE FOR CHAIN B OF ACTINOMYCIN D
Software
9
A
DC
2
A
DC
2
9
1_555
A
DG
3
A
DG
3
9
1_555
A
DT
4
A
DT
4
9
1_555
A
DT
5
A
DT
5
9
1_555
A
DT
6
A
DT
6
9
1_555
A
DT
7
A
DT
7
9
1_555
A
DG
8
A
DG
8
9
1_555
A
DT
9
A
DT
9
9
1_555
A
DG
10
A
DG
10
9
1_555
1
P 1