1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chin, K.-H. Chou, S.-H. Chen, F.-M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H11 N O2 117.146 D-VALINE D-peptide linking C6 H13 N O2 131.173 n N-METHYLVALINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C16 H12 N2 O4 296.277 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE non-polymer C3 H7 N O2 89.093 n SARCOSINE peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C N 84 N N N 85 N C N 86 N O N 87 N N N 88 N C N 89 N O N 90 N C N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 R C N 110 N C N 111 N C N 112 N C N 113 N C N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 S C N 130 N C N 131 N C N 132 N C N 133 N C N 134 N O N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 S C N 151 N C N 152 N O N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H Y 166 N C N 167 N C N 168 N O Y 169 N C N 170 N N Y 171 N C N 172 N O Y 173 N C Y 174 N O Y 175 N C Y 176 N C Y 177 N C Y 178 N C N 179 N C N 180 N O Y 181 N N Y 182 N C Y 183 N C Y 184 N C Y 185 N C N 186 N C N 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 N C N 202 N C N 203 N O N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 R C N 218 N O N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N doub Y 170 N sing N 171 N doub N 172 N sing N 173 N sing Y 174 N sing N 175 N sing N 176 N sing N 177 N doub Y 178 N sing Y 179 N doub N 180 N sing Y 181 N sing Y 182 N sing Y 183 N doub Y 184 N sing N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N sing N 190 N sing Y 191 N sing N 192 N doub N 193 N sing Y 194 N doub Y 195 N sing Y 196 N sing Y 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 31 2622 10.1093/NAR/GKG353 12736312 Solution Structure of the Actd-5'-Ccgtt(3)Gtgg-3' Complex: Drug Interaction with Tandem G.T Mismatches and Hairpin Loop Backbone. 2003 10.2210/pdb1ovf/pdb pdb_00001ovf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 3371.193 (5'-D(*CP*CP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3') 1 syn polymer 1259.447 ACTINOMYCIN D 1 syn polymer DACTINOMYCIN no no (DC)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DT)(DG)(DG) CCGTTTTGTGG A polydeoxyribonucleotide no yes T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA) TVPGVXTVPGV B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n -12.382 1 19 A 1 A 11 -1.306 A_DC1:DG11_A 1 -17.717 0.798 0.345 -0.288 3.186 1 19 A 2 A 10 -0.056 A_DC2:DG10_A 2 -13.532 0.047 -0.290 -0.038 21.881 1 28 A 3 A 9 1.244 A_DG3:DT9_A 3 10.928 -1.617 0.901 -0.381 -14.190 1 28 A 4 A 8 -6.797 A_DT4:DG8_A 4 8.954 1.486 0.559 -0.389 2.143 30.982 A A 1 2 12.952 A A 11 10 2.768 6.693 -0.179 -1.360 AA_DC1DC2:DG10DG11_AA 1 11.852 -22.935 27.898 -3.568 2.148 2.743 21.338 A A 2 3 36.212 A A 10 9 2.948 11.973 0.272 1.529 AA_DC2DG3:DT9DG10_AA 2 -10.067 30.448 14.558 -0.964 -5.016 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software pdbx_validate_polymer_linkage struct_conn repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Advisory Atomic model Data collection Database references Derived calculations 1 0 2003-05-27 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_atom_id CRYSTAL STRUCTURE OF ACTINOMYCIN Z3 CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2 CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC) CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2 CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2 CRYSTAL STRUCTURE OF ACTINOMYCIN X2 RCSB Y RCSB 2003-03-26 REL 1890 STREPTOMYCES ANTIBIOTICUS sample ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) Actinomycin D Polypeptide 10 2D NOESY DQF-COSY 2D TOCSY DISTANCE GEOMETRY, SIMULATED ANNEALING, MOLECULAR DYNAMICS 1 10MM PHOSPHATE BUFFER 20MM NACL, 90% H2O, 10% D2O 10MM PHOSPHATE BUFFER 20MM NACL refinement DGII structure solution VNMR structure solution Felix structure solution DGII 600 Varian DC 1 n 1 DC 1 A DC 2 n 2 DC 2 A DG 3 n 3 DG 3 A DT 4 n 4 DT 4 A DT 5 n 5 DT 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DG 8 n 8 DG 8 A DT 9 n 9 DT 9 A DG 10 n 10 DG 10 A DG 11 n 11 DG 11 A THR 1 n 1 THR 1 B DVA 2 n 2 DVA 2 B PRO 3 n 3 PRO 3 B SAR 4 n 4 SAR 4 B MVA 5 n 5 MVA 5 B PXZ 6 n 6 PXZ 6 B THR 7 n 7 THR 7 B DVA 8 n 8 DVA 8 B PRO 9 n 9 PRO 9 B SAR 10 n 10 SAR 10 B MVA 11 n 11 MVA 11 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DC 2 0.133 SIDE CHAIN 1 A DT 5 0.081 SIDE CHAIN 1 A DT 7 0.072 SIDE CHAIN 1 A DG 8 0.090 SIDE CHAIN 2 A DC 2 0.139 SIDE CHAIN 2 A DT 5 0.081 SIDE CHAIN 2 A DT 7 0.069 SIDE CHAIN 2 A DG 8 0.088 SIDE CHAIN 3 A DC 1 0.065 SIDE CHAIN 3 A DC 2 0.160 SIDE CHAIN 3 A DT 5 0.084 SIDE CHAIN 3 A DT 7 0.074 SIDE CHAIN 3 A DG 8 0.089 SIDE CHAIN 4 A DC 2 0.119 SIDE CHAIN 4 A DT 6 0.073 SIDE CHAIN 4 A DT 7 0.064 SIDE CHAIN 4 A DG 8 0.053 SIDE CHAIN 5 A DC 2 0.115 SIDE CHAIN 5 A DT 5 0.077 SIDE CHAIN 5 A DT 7 0.062 SIDE CHAIN 5 A DG 8 0.073 SIDE CHAIN 6 A DC 2 0.139 SIDE CHAIN 6 A DT 5 0.083 SIDE CHAIN 6 A DT 6 0.076 SIDE CHAIN 6 A DT 7 0.071 SIDE CHAIN 6 A DG 8 0.066 SIDE CHAIN 7 A DC 2 0.120 SIDE CHAIN 7 A DT 5 0.072 SIDE CHAIN 7 A DT 6 0.081 SIDE CHAIN 7 A DT 7 0.071 SIDE CHAIN 7 A DG 8 0.064 SIDE CHAIN 8 A DC 2 0.131 SIDE CHAIN 8 A DT 5 0.074 SIDE CHAIN 8 A DT 6 0.075 SIDE CHAIN 8 A DT 7 0.065 SIDE CHAIN 8 A DG 8 0.063 SIDE CHAIN 9 A DC 2 0.129 SIDE CHAIN 9 A DT 7 0.076 SIDE CHAIN 9 A DG 8 0.071 SIDE CHAIN 10 A DC 2 0.142 SIDE CHAIN 10 A DT 5 0.093 SIDE CHAIN 10 A DT 6 0.090 SIDE CHAIN 10 A DT 7 0.080 SIDE CHAIN 10 A DG 8 0.093 SIDE CHAIN 1 6.41 0.30 108.30 114.71 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 2.05 0.30 108.30 110.35 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 3.75 0.30 108.30 112.05 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 4.12 0.30 108.30 112.42 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 -3.65 0.60 122.90 119.25 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 5.25 0.30 108.30 113.55 A A A O4' C1' N1 DT DT DT 5 5 5 N 1 2.38 0.30 108.30 110.68 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 3.31 0.30 108.30 111.61 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 2.72 0.30 108.30 111.02 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 3.19 0.30 108.30 111.49 A A A O4' C1' N9 DG DG DG 11 11 11 N 2 6.65 0.30 108.30 114.95 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 2.30 0.30 108.30 110.60 A A A O4' C1' N1 DC DC DC 2 2 2 N 2 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DG DG DG 3 3 3 N 2 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DT DT DT 4 4 4 N 2 5.06 0.30 108.30 113.36 A A A O4' C1' N1 DT DT DT 5 5 5 N 2 2.63 0.30 108.30 110.93 A A A O4' C1' N1 DT DT DT 6 6 6 N 2 3.47 0.30 108.30 111.77 A A A O4' C1' N1 DT DT DT 7 7 7 N 2 2.96 0.30 108.30 111.26 A A A O4' C1' N9 DG DG DG 10 10 10 N 2 3.24 0.30 108.30 111.54 A A A O4' C1' N9 DG DG DG 11 11 11 N 3 6.13 0.30 108.30 114.43 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 2.82 0.30 108.30 111.12 A A A O4' C1' N9 DG DG DG 3 3 3 N 3 4.09 0.30 108.30 112.39 A A A O4' C1' N1 DT DT DT 4 4 4 N 3 -3.68 0.60 122.90 119.22 A A A C6 C5 C7 DT DT DT 4 4 4 N 3 5.41 0.30 108.30 113.71 A A A O4' C1' N1 DT DT DT 5 5 5 N 3 2.49 0.30 108.30 110.79 A A A O4' C1' N1 DT DT DT 6 6 6 N 3 3.26 0.30 108.30 111.56 A A A O4' C1' N1 DT DT DT 7 7 7 N 3 2.69 0.30 108.30 110.99 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 3.78 0.30 108.30 112.08 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 4.71 0.30 108.30 113.01 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 4.48 0.30 108.30 112.78 A A A O4' C1' N1 DT DT DT 4 4 4 N 4 4.33 0.30 108.30 112.63 A A A O4' C1' N1 DT DT DT 5 5 5 N 4 6.17 0.30 108.30 114.47 A A A O4' C1' N1 DT DT DT 6 6 6 N 4 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DT DT DT 7 7 7 N 4 -3.71 0.60 122.90 119.19 A A A C6 C5 C7 DT DT DT 7 7 7 N 4 2.03 0.30 108.30 110.33 A A A O4' C1' N9 DG DG DG 8 8 8 N 4 2.72 0.30 108.30 111.02 A A A O4' C1' N1 DT DT DT 9 9 9 N 4 3.13 0.30 108.30 111.43 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DG DG DG 11 11 11 N 5 5.22 0.30 108.30 113.52 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 4.08 0.30 108.30 112.38 A A A O4' C1' N9 DG DG DG 3 3 3 N 5 4.25 0.30 108.30 112.55 A A A O4' C1' N1 DT DT DT 4 4 4 N 5 4.90 0.30 108.30 113.20 A A A O4' C1' N1 DT DT DT 5 5 5 N 5 3.32 0.30 108.30 111.62 A A A O4' C1' N1 DT DT DT 6 6 6 N 5 3.61 0.30 108.30 111.91 A A A O4' C1' N1 DT DT DT 7 7 7 N 5 -3.68 0.60 122.90 119.22 A A A C6 C5 C7 DT DT DT 7 7 7 N 5 2.44 0.30 108.30 110.74 A A A O4' C1' N1 DT DT DT 9 9 9 N 5 3.09 0.30 108.30 111.39 A A A O4' C1' N9 DG DG DG 10 10 10 N 5 2.93 0.30 108.30 111.23 A A A O4' C1' N9 DG DG DG 11 11 11 N 6 3.75 0.30 108.30 112.05 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 4.23 0.30 108.30 112.53 A A A O4' C1' N9 DG DG DG 3 3 3 N 6 4.26 0.30 108.30 112.56 A A A O4' C1' N1 DT DT DT 4 4 4 N 6 4.75 0.30 108.30 113.05 A A A O4' C1' N1 DT DT DT 5 5 5 N 6 5.82 0.30 108.30 114.12 A A A O4' C1' N1 DT DT DT 6 6 6 N 6 3.95 0.30 108.30 112.25 A A A O4' C1' N1 DT DT DT 7 7 7 N 6 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 7 7 7 N 6 2.43 0.30 108.30 110.73 A A A O4' C1' N1 DT DT DT 9 9 9 N 6 3.36 0.30 108.30 111.66 A A A O4' C1' N9 DG DG DG 10 10 10 N 6 2.85 0.30 108.30 111.15 A A A O4' C1' N9 DG DG DG 11 11 11 N 7 5.42 0.30 108.30 113.72 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 2.13 0.30 108.30 110.43 A A A O4' C1' N1 DC DC DC 2 2 2 N 7 4.51 0.30 108.30 112.81 A A A O4' C1' N9 DG DG DG 3 3 3 N 7 4.24 0.30 108.30 112.54 A A A O4' C1' N1 DT DT DT 4 4 4 N 7 4.56 0.30 108.30 112.86 A A A O4' C1' N1 DT DT DT 5 5 5 N 7 6.43 0.30 108.30 114.73 A A A O4' C1' N1 DT DT DT 6 6 6 N 7 3.65 0.30 108.30 111.95 A A A O4' C1' N1 DT DT DT 7 7 7 N 7 2.81 0.30 108.30 111.11 A A A O4' C1' N1 DT DT DT 9 9 9 N 7 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DG DG DG 10 10 10 N 7 3.58 0.30 108.30 111.88 A A A O4' C1' N9 DG DG DG 11 11 11 N 8 4.49 0.30 108.30 112.79 A A A O4' C1' N1 DC DC DC 1 1 1 N 8 4.70 0.30 108.30 113.00 A A A O4' C1' N9 DG DG DG 3 3 3 N 8 4.32 0.30 108.30 112.62 A A A O4' C1' N1 DT DT DT 4 4 4 N 8 4.52 0.30 108.30 112.82 A A A O4' C1' N1 DT DT DT 5 5 5 N 8 6.01 0.30 108.30 114.31 A A A O4' C1' N1 DT DT DT 6 6 6 N 8 3.85 0.30 108.30 112.15 A A A O4' C1' N1 DT DT DT 7 7 7 N 8 -3.68 0.60 122.90 119.22 A A A C6 C5 C7 DT DT DT 7 7 7 N 8 2.41 0.30 108.30 110.71 A A A O4' C1' N1 DT DT DT 9 9 9 N 8 3.21 0.30 108.30 111.51 A A A O4' C1' N9 DG DG DG 10 10 10 N 8 3.05 0.30 108.30 111.35 A A A O4' C1' N9 DG DG DG 11 11 11 N 9 3.27 0.30 108.30 111.57 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 4.21 0.30 108.30 112.51 A A A O4' C1' N9 DG DG DG 3 3 3 N 9 4.00 0.30 108.30 112.30 A A A O4' C1' N1 DT DT DT 4 4 4 N 9 4.81 0.30 108.30 113.11 A A A O4' C1' N1 DT DT DT 5 5 5 N 9 2.58 0.30 108.30 110.88 A A A O4' C1' N1 DT DT DT 6 6 6 N 9 3.70 0.30 108.30 112.00 A A A O4' C1' N1 DT DT DT 7 7 7 N 9 2.62 0.30 108.30 110.92 A A A O4' C1' N1 DT DT DT 9 9 9 N 9 3.37 0.30 108.30 111.67 A A A O4' C1' N9 DG DG DG 10 10 10 N 10 6.01 0.30 108.30 114.31 A A A O4' C1' N1 DC DC DC 1 1 1 N 10 3.09 0.30 108.30 111.39 A A A O4' C1' N9 DG DG DG 3 3 3 N 10 4.41 0.30 108.30 112.71 A A A O4' C1' N1 DT DT DT 4 4 4 N 10 -3.81 0.60 122.90 119.09 A A A C6 C5 C7 DT DT DT 4 4 4 N 10 4.54 0.30 108.30 112.84 A A A O4' C1' N1 DT DT DT 5 5 5 N 10 7.10 0.30 108.30 115.40 A A A O4' C1' N1 DT DT DT 6 6 6 N 10 -3.85 0.60 122.90 119.05 A A A C6 C5 C7 DT DT DT 6 6 6 N 10 4.02 0.30 108.30 112.32 A A A O4' C1' N1 DT DT DT 7 7 7 N 10 -4.05 0.60 122.90 118.85 A A A C6 C5 C7 DT DT DT 7 7 7 N 10 1.97 0.30 108.30 110.27 A A A O4' C1' N9 DG DG DG 10 10 10 N 10 3.06 0.30 108.30 111.36 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 B DVA 8 59.54 -109.54 2 B DVA 8 59.09 -109.43 NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex 1 N N 2 N N covale 1.337 both B THR 1 B C THR 1 1_555 B DVA 2 B N DVA 2 1_555 covale 1.374 one B THR 1 B OG1 THR 1 1_555 B MVA 5 B C MVA 5 1_555 covale 1.343 one B THR 1 B N THR 1 1_555 B PXZ 6 B C0 PXZ 6 1_555 covale 1.347 both B DVA 2 B C DVA 2 1_555 B PRO 3 B N PRO 3 1_555 covale 1.351 both B PRO 3 B C PRO 3 1_555 B SAR 4 B N SAR 4 1_555 covale 1.352 both B SAR 4 B C SAR 4 1_555 B MVA 5 B N MVA 5 1_555 covale 1.345 one B PXZ 6 B C0' PXZ 6 1_555 B THR 7 B N THR 7 1_555 covale 1.339 both B THR 7 B C THR 7 1_555 B DVA 8 B N DVA 8 1_555 covale 1.380 one B THR 7 B OG1 THR 7 1_555 B MVA 11 B C MVA 11 1_555 covale 1.344 both B DVA 8 B C DVA 8 1_555 B PRO 9 B N PRO 9 1_555 covale 1.349 both B PRO 9 B C PRO 9 1_555 B SAR 10 B N SAR 10 1_555 covale 1.348 both B SAR 10 B C SAR 10 1_555 B MVA 11 B N MVA 11 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 11 A N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 11 A O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 11 A N2 DG 11 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 10 A N1 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 10 A O6 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 10 A N2 DG 10 1_555 hydrog TYPE_28_PAIR A DG 3 A N1 DG 3 1_555 A DT 9 A O2 DT 9 1_555 hydrog TYPE_28_PAIR A DG 3 A O6 DG 3 1_555 A DT 9 A N3 DT 9 1_555 hydrog TYPE_28_PAIR A DT 4 A N3 DT 4 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_28_PAIR A DT 4 A O2 DT 4 1_555 A DG 8 A N1 DG 8 1_555 hydrog TYPE_28_PAIR A DT 5 A N3 DT 5 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_28_PAIR A DT 5 A O2 DT 5 1_555 A DG 8 A N1 DG 8 1_555 DNA/ANTIBIOTIC ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, MISMATCH, DNA-ANTIBIOTIC COMPLEX B DVA 2 B DVA 2 1 B PRO 3 B PRO 3 2.89 B PRO 3 B PRO 3 1 B SAR 4 B SAR 4 2.71 B DVA 8 B DVA 8 1 B PRO 9 B PRO 9 4.65 B PRO 9 B PRO 9 1 B SAR 10 B SAR 10 -8.26 B DVA 2 B DVA 2 2 B PRO 3 B PRO 3 2.87 B PRO 3 B PRO 3 2 B SAR 4 B SAR 4 3.04 B DVA 8 B DVA 8 2 B PRO 9 B PRO 9 4.79 B PRO 9 B PRO 9 2 B SAR 10 B SAR 10 -8.38 B DVA 2 B DVA 2 3 B PRO 3 B PRO 3 4.15 B PRO 3 B PRO 3 3 B SAR 4 B SAR 4 0.06 B DVA 8 B DVA 8 3 B PRO 9 B PRO 9 3.40 B PRO 9 B PRO 9 3 B SAR 10 B SAR 10 -7.33 B DVA 2 B DVA 2 4 B PRO 3 B PRO 3 4.07 B PRO 3 B PRO 3 4 B SAR 4 B SAR 4 -2.81 B DVA 8 B DVA 8 4 B PRO 9 B PRO 9 9.60 B PRO 9 B PRO 9 4 B SAR 10 B SAR 10 -10.63 B DVA 2 B DVA 2 5 B PRO 3 B PRO 3 2.42 B PRO 3 B PRO 3 5 B SAR 4 B SAR 4 -2.89 B DVA 8 B DVA 8 5 B PRO 9 B PRO 9 6.08 B PRO 9 B PRO 9 5 B SAR 10 B SAR 10 -8.35 B DVA 2 B DVA 2 6 B PRO 3 B PRO 3 2.64 B PRO 3 B PRO 3 6 B SAR 4 B SAR 4 -0.67 B DVA 8 B DVA 8 6 B PRO 9 B PRO 9 3.87 B PRO 9 B PRO 9 6 B SAR 10 B SAR 10 -7.99 B DVA 2 B DVA 2 7 B PRO 3 B PRO 3 2.42 B PRO 3 B PRO 3 7 B SAR 4 B SAR 4 -3.36 B DVA 8 B DVA 8 7 B PRO 9 B PRO 9 5.97 B PRO 9 B PRO 9 7 B SAR 10 B SAR 10 -8.61 B DVA 2 B DVA 2 8 B PRO 3 B PRO 3 2.20 B PRO 3 B PRO 3 8 B SAR 4 B SAR 4 -3.28 B DVA 8 B DVA 8 8 B PRO 9 B PRO 9 6.03 B PRO 9 B PRO 9 8 B SAR 10 B SAR 10 -8.74 B DVA 2 B DVA 2 9 B PRO 3 B PRO 3 2.67 B PRO 3 B PRO 3 9 B SAR 4 B SAR 4 -3.87 B DVA 8 B DVA 8 9 B PRO 9 B PRO 9 5.31 B PRO 9 B PRO 9 9 B SAR 10 B SAR 10 -7.76 B DVA 2 B DVA 2 10 B PRO 3 B PRO 3 4.51 B PRO 3 B PRO 3 10 B SAR 4 B SAR 4 -0.15 B DVA 8 B DVA 8 10 B PRO 9 B PRO 9 3.58 B PRO 9 B PRO 9 10 B SAR 10 B SAR 10 -7.03 1OVF PDB 1 1OVF NOR00228 NOR 2 NOR00228 1 11 1OVF 1 11 1OVF A 1 1 11 1 11 1OVF 1 11 NOR00228 B 2 1 11 BINDING SITE FOR CHAIN B OF ACTINOMYCIN D Software 9 A DC 2 A DC 2 9 1_555 A DG 3 A DG 3 9 1_555 A DT 4 A DT 4 9 1_555 A DT 5 A DT 5 9 1_555 A DT 6 A DT 6 9 1_555 A DT 7 A DT 7 9 1_555 A DG 8 A DG 8 9 1_555 A DT 9 A DT 9 9 1_555 A DG 10 A DG 10 9 1_555 1 P 1