0.011133
0.000000
0.000000
0.000000
0.006769
0.000000
0.000000
0.000000
0.026606
0.00000
0.00000
0.00000
Di Costanzo, L.
Geremia, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90
90
90
89.78
147.72
37.60
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Co 2
58.933
COBALT (II) ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
127
17266
17276
10.1021/ja054199x
16332076
Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography.
2005
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
1435
1439
10.1107/S0907444903012538
12876346
Phasing protein structures using the group-subgroup relation.
2003
GE
ANGEW.CHEM.INT.ED.ENGL.
9999
1433-7851
42
417
420
10.1002/anie.200390127
Sliding Helix Induced Change of Coordination Geomet Model Di-Mn(II) Protein
2003
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
123
12749
12757
10.1021/ja010506x
Toward the De Novo Design of a Catalytically Active Helix-Bundle: A Substrate Accessible Carboxylate-Br Dinuclear Metal Center
2001
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
6298
6305
10.1073/pnas.97.12.6298
Retrostructural Analysis of Metalloproteins: Application to the Design of a Minimal Model for Diiron Proteins
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
IMAGE PLATE
2001-09-01
MARRESEARCH
SI(111)
1.200
M
x-ray
1
1.200
1.0
1.20000
1.0
5.2R
ELETTRA
1.200
1.20000
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
5828.813
four-helix bundle model di-Co(II)-DF1-L13A (form I)
4
syn
polymer
58.933
COBALT (II) ION
7
syn
non-polymer
18.015
water
10
nat
water
di-Co(II)-DF1-L13A (form I)
no
yes
(ACE)DYLRELLKLELQAIKQYREALEYVKLPVLAKILEDEEKHIEWLETILG(NH2)
XDYLRELLKLELQAIKQYREALEYVKLPVLAKILEDEEKHIEWLETILGX
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.57
53.99
VAPOR DIFFUSION, HANGING DROP
7.50
CO(CH3COO)2 30 mM, buffer tris 100 mM pH 7.5, peg 400 43%, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 7.50
298
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Derived calculations
1
0
2004-04-06
1
1
2008-04-29
1
2
2011-07-13
1
3
2019-11-20
di-Zn-Df1-L13
di-Mn(II)-Df1-L13A-fI
di-Mn(II)-Df1-L13A-fII
di-Mn(II)-Df1-L13G
CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Mn(II)-DF1-L13
CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)
RCSB
Y
RCSB
2003-03-27
REL
REL
CO
COBALT (II) ION
HOH
water
THIS PROTEIN WAS CHEMICALLY SYNTHESIZED.
sample
CO
101
2
CO
CO
101
A
CO
105
2
CO
CO
105
A
CO
102
2
CO
CO
102
B
CO
103
2
CO
CO
103
C
CO
104
2
CO
CO
104
D
CO
106
2
CO
CO
106
D
CO
107
2
CO
CO
107
D
HOH
1
3
HOH
HOH
106
A
HOH
2
3
HOH
HOH
107
A
HOH
5
3
HOH
HOH
108
A
HOH
4
3
HOH
HOH
103
B
HOH
6
3
HOH
HOH
104
B
HOH
7
3
HOH
HOH
104
C
HOH
8
3
HOH
HOH
105
C
HOH
3
3
HOH
HOH
108
D
HOH
9
3
HOH
HOH
109
D
HOH
10
3
HOH
HOH
110
D
ACE
0
n
1
ACE
0
A
ASP
1
n
2
ASP
1
A
TYR
2
n
3
TYR
2
A
LEU
3
n
4
LEU
3
A
ARG
4
n
5
ARG
4
A
GLU
5
n
6
GLU
5
A
LEU
6
n
7
LEU
6
A
LEU
7
n
8
LEU
7
A
LYS
8
n
9
LYS
8
A
LEU
9
n
10
LEU
9
A
GLU
10
n
11
GLU
10
A
LEU
11
n
12
LEU
11
A
GLN
12
n
13
GLN
12
A
ALA
13
n
14
ALA
13
A
ILE
14
n
15
ILE
14
A
LYS
15
n
16
LYS
15
A
GLN
16
n
17
GLN
16
A
TYR
17
n
18
TYR
17
A
ARG
18
n
19
ARG
18
A
GLU
19
n
20
GLU
19
A
ALA
20
n
21
ALA
20
A
LEU
21
n
22
LEU
21
A
GLU
22
n
23
GLU
22
A
TYR
23
n
24
TYR
23
A
VAL
24
n
25
VAL
24
A
LYS
25
n
26
LYS
25
A
LEU
26
n
27
LEU
26
A
PRO
27
n
28
PRO
27
A
VAL
28
n
29
VAL
28
A
LEU
29
n
30
LEU
29
A
ALA
30
n
31
ALA
30
A
LYS
31
n
32
LYS
31
A
ILE
32
n
33
ILE
32
A
LEU
33
n
34
LEU
33
A
GLU
34
n
35
GLU
34
A
ASP
35
n
36
ASP
35
A
GLU
36
n
37
GLU
36
A
GLU
37
n
38
GLU
37
A
LYS
38
n
39
LYS
38
A
HIS
39
n
40
HIS
39
A
ILE
40
n
41
ILE
40
A
GLU
41
n
42
GLU
41
A
TRP
42
n
43
TRP
42
A
LEU
43
n
44
LEU
43
A
GLU
44
n
45
GLU
44
A
THR
45
n
46
THR
45
A
ILE
46
n
47
ILE
46
A
LEU
47
n
48
LEU
47
A
GLY
48
n
49
GLY
48
A
NH2
49
n
50
NH2
49
A
ACE
0
n
1
ACE
0
B
ASP
1
n
2
ASP
1
B
TYR
2
n
3
TYR
2
B
LEU
3
n
4
LEU
3
B
ARG
4
n
5
ARG
4
B
GLU
5
n
6
GLU
5
B
LEU
6
n
7
LEU
6
B
LEU
7
n
8
LEU
7
B
LYS
8
n
9
LYS
8
B
LEU
9
n
10
LEU
9
B
GLU
10
n
11
GLU
10
B
LEU
11
n
12
LEU
11
B
GLN
12
n
13
GLN
12
B
ALA
13
n
14
ALA
13
B
ILE
14
n
15
ILE
14
B
LYS
15
n
16
LYS
15
B
GLN
16
n
17
GLN
16
B
TYR
17
n
18
TYR
17
B
ARG
18
n
19
ARG
18
B
GLU
19
n
20
GLU
19
B
ALA
20
n
21
ALA
20
B
LEU
21
n
22
LEU
21
B
GLU
22
n
23
GLU
22
B
TYR
23
n
24
TYR
23
B
VAL
24
n
25
VAL
24
B
LYS
25
n
26
LYS
25
B
LEU
26
n
27
LEU
26
B
PRO
27
n
28
PRO
27
B
VAL
28
n
29
VAL
28
B
LEU
29
n
30
LEU
29
B
ALA
30
n
31
ALA
30
B
LYS
31
n
32
LYS
31
B
ILE
32
n
33
ILE
32
B
LEU
33
n
34
LEU
33
B
GLU
34
n
35
GLU
34
B
ASP
35
n
36
ASP
35
B
GLU
36
n
37
GLU
36
B
GLU
37
n
38
GLU
37
B
LYS
38
n
39
LYS
38
B
HIS
39
n
40
HIS
39
B
ILE
40
n
41
ILE
40
B
GLU
41
n
42
GLU
41
B
TRP
42
n
43
TRP
42
B
LEU
43
n
44
LEU
43
B
GLU
44
n
45
GLU
44
B
THR
45
n
46
THR
45
B
ILE
46
n
47
ILE
46
B
LEU
47
n
48
LEU
47
B
GLY
48
n
49
GLY
48
B
NH2
49
n
50
NH2
49
B
ACE
0
n
1
ACE
0
C
ASP
1
n
2
ASP
1
C
TYR
2
n
3
TYR
2
C
LEU
3
n
4
LEU
3
C
ARG
4
n
5
ARG
4
C
GLU
5
n
6
GLU
5
C
LEU
6
n
7
LEU
6
C
LEU
7
n
8
LEU
7
C
LYS
8
n
9
LYS
8
C
LEU
9
n
10
LEU
9
C
GLU
10
n
11
GLU
10
C
LEU
11
n
12
LEU
11
C
GLN
12
n
13
GLN
12
C
ALA
13
n
14
ALA
13
C
ILE
14
n
15
ILE
14
C
LYS
15
n
16
LYS
15
C
GLN
16
n
17
GLN
16
C
TYR
17
n
18
TYR
17
C
ARG
18
n
19
ARG
18
C
GLU
19
n
20
GLU
19
C
ALA
20
n
21
ALA
20
C
LEU
21
n
22
LEU
21
C
GLU
22
n
23
GLU
22
C
TYR
23
n
24
TYR
23
C
VAL
24
n
25
VAL
24
C
LYS
25
n
26
LYS
25
C
LEU
26
n
27
LEU
26
C
PRO
27
n
28
PRO
27
C
VAL
28
n
29
VAL
28
C
LEU
29
n
30
LEU
29
C
ALA
30
n
31
ALA
30
C
LYS
31
n
32
LYS
31
C
ILE
32
n
33
ILE
32
C
LEU
33
n
34
LEU
33
C
GLU
34
n
35
GLU
34
C
ASP
35
n
36
ASP
35
C
GLU
36
n
37
GLU
36
C
GLU
37
n
38
GLU
37
C
LYS
38
n
39
LYS
38
C
HIS
39
n
40
HIS
39
C
ILE
40
n
41
ILE
40
C
GLU
41
n
42
GLU
41
C
TRP
42
n
43
TRP
42
C
LEU
43
n
44
LEU
43
C
GLU
44
n
45
GLU
44
C
THR
45
n
46
THR
45
C
ILE
46
n
47
ILE
46
C
LEU
47
n
48
LEU
47
C
GLY
48
n
49
GLY
48
C
NH2
49
n
50
NH2
49
C
ACE
0
n
1
ACE
0
D
ASP
1
n
2
ASP
1
D
TYR
2
n
3
TYR
2
D
LEU
3
n
4
LEU
3
D
ARG
4
n
5
ARG
4
D
GLU
5
n
6
GLU
5
D
LEU
6
n
7
LEU
6
D
LEU
7
n
8
LEU
7
D
LYS
8
n
9
LYS
8
D
LEU
9
n
10
LEU
9
D
GLU
10
n
11
GLU
10
D
LEU
11
n
12
LEU
11
D
GLN
12
n
13
GLN
12
D
ALA
13
n
14
ALA
13
D
ILE
14
n
15
ILE
14
D
LYS
15
n
16
LYS
15
D
GLN
16
n
17
GLN
16
D
TYR
17
n
18
TYR
17
D
ARG
18
n
19
ARG
18
D
GLU
19
n
20
GLU
19
D
ALA
20
n
21
ALA
20
D
LEU
21
n
22
LEU
21
D
GLU
22
n
23
GLU
22
D
TYR
23
n
24
TYR
23
D
VAL
24
n
25
VAL
24
D
LYS
25
n
26
LYS
25
D
LEU
26
n
27
LEU
26
D
PRO
27
n
28
PRO
27
D
VAL
28
n
29
VAL
28
D
LEU
29
n
30
LEU
29
D
ALA
30
n
31
ALA
30
D
LYS
31
n
32
LYS
31
D
ILE
32
n
33
ILE
32
D
LEU
33
n
34
LEU
33
D
GLU
34
n
35
GLU
34
D
ASP
35
n
36
ASP
35
D
GLU
36
n
37
GLU
36
D
GLU
37
n
38
GLU
37
D
LYS
38
n
39
LYS
38
D
HIS
39
n
40
HIS
39
D
ILE
40
n
41
ILE
40
D
GLU
41
n
42
GLU
41
D
TRP
42
n
43
TRP
42
D
LEU
43
n
44
LEU
43
D
GLU
44
n
45
GLU
44
D
THR
45
n
46
THR
45
D
ILE
46
n
47
ILE
46
D
LEU
47
n
48
LEU
47
D
GLY
48
n
49
GLY
48
D
NH2
49
n
50
NH2
49
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2410
-53
6410
2600
-45
6330
2800
-57
6290
A
GLU
10
A
OE1
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
10
A
OE2
GLU
11
1_555
65.5
A
GLU
10
A
OE1
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE1
GLU
37
1_555
89.7
A
GLU
10
A
OE2
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE1
GLU
37
1_555
155.2
A
GLU
10
A
OE1
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
HIS
39
A
ND1
HIS
40
1_555
107.6
A
GLU
10
A
OE2
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
HIS
39
A
ND1
HIS
40
1_555
111.2
A
GLU
36
A
OE1
GLU
37
1_555
A
CO
101
E
CO
CO
1_555
A
HIS
39
A
ND1
HIS
40
1_555
74.3
A
GLU
10
A
OE1
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE2
GLU
37
1_555
91.5
A
GLU
10
A
OE2
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE2
GLU
37
1_555
137.4
A
GLU
36
A
OE1
GLU
37
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE2
GLU
37
1_555
38.0
A
HIS
39
A
ND1
HIS
40
1_555
A
CO
101
E
CO
CO
1_555
A
GLU
36
A
OE2
GLU
37
1_555
109.8
A
GLU
19
A
OE1
GLU
20
1_555
A
CO
105
F
CO
CO
1_555
A
HOH
108
L
O
HOH
1_555
73.6
B
GLU
10
B
OE1
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
10
B
OE2
GLU
11
1_555
65.7
B
GLU
10
B
OE1
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE1
GLU
37
1_555
77.0
B
GLU
10
B
OE2
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE1
GLU
37
1_555
142.4
B
GLU
10
B
OE1
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
HIS
39
B
ND1
HIS
40
1_555
91.9
B
GLU
10
B
OE2
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
HIS
39
B
ND1
HIS
40
1_555
91.7
B
GLU
36
B
OE1
GLU
37
1_555
B
CO
102
G
CO
CO
1_555
B
HIS
39
B
ND1
HIS
40
1_555
94.7
B
GLU
10
B
OE1
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE2
GLU
37
1_555
105.8
B
GLU
10
B
OE2
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE2
GLU
37
1_555
170.2
B
GLU
36
B
OE1
GLU
37
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE2
GLU
37
1_555
28.7
B
HIS
39
B
ND1
HIS
40
1_555
B
CO
102
G
CO
CO
1_555
B
GLU
36
B
OE2
GLU
37
1_555
93.4
C
GLU
10
C
OE1
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
C
GLU
10
C
OE2
GLU
11
1_555
64.7
C
GLU
10
C
OE1
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
C
GLU
36
C
OE1
GLU
37
1_555
95.2
C
GLU
10
C
OE2
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
C
GLU
36
C
OE1
GLU
37
1_555
146.8
C
GLU
10
C
OE1
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
C
HIS
39
C
ND1
HIS
40
1_555
104.4
C
GLU
10
C
OE2
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
C
HIS
39
C
ND1
HIS
40
1_555
124.7
C
GLU
36
C
OE1
GLU
37
1_555
C
CO
103
H
CO
CO
1_555
C
HIS
39
C
ND1
HIS
40
1_555
84.6
C
GLU
10
C
OE1
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
D
GLU
36
D
OE2
GLU
37
1_555
170.0
C
GLU
10
C
OE2
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
D
GLU
36
D
OE2
GLU
37
1_555
112.8
C
GLU
36
C
OE1
GLU
37
1_555
C
CO
103
H
CO
CO
1_555
D
GLU
36
D
OE2
GLU
37
1_555
82.2
C
HIS
39
C
ND1
HIS
40
1_555
C
CO
103
H
CO
CO
1_555
D
GLU
36
D
OE2
GLU
37
1_555
85.0
C
GLU
36
C
OE2
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
10
D
OE1
GLU
11
1_555
148.2
C
GLU
36
C
OE2
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
10
D
OE2
GLU
11
1_555
102.3
D
GLU
10
D
OE1
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
10
D
OE2
GLU
11
1_555
67.0
C
GLU
36
C
OE2
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
36
D
OE1
GLU
37
1_555
98.2
D
GLU
10
D
OE1
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
36
D
OE1
GLU
37
1_555
100.0
D
GLU
10
D
OE2
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
D
GLU
36
D
OE1
GLU
37
1_555
157.1
C
GLU
36
C
OE2
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
D
HIS
39
D
ND1
HIS
40
1_555
71.4
D
GLU
10
D
OE1
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
D
HIS
39
D
ND1
HIS
40
1_555
139.8
D
GLU
10
D
OE2
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
D
HIS
39
D
ND1
HIS
40
1_555
107.3
D
GLU
36
D
OE1
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
D
HIS
39
D
ND1
HIS
40
1_555
69.8
D
GLN
16
D
OE1
GLN
17
1_555
D
CO
106
J
CO
CO
1_555
D
GLU
19
D
OE1
GLU
20
1_555
89.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z+1/2
crystal symmetry operation
89.7800000000
0.0000000000
18.8000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_554
x,-y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-37.6000000000
1
C
D
OE2
CE1
GLU
HIS
36
39
2.16
1
3.10
0.50
120.30
123.40
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
18
18
18
N
1
15.58
2.30
115.30
130.88
B
B
B
CA
CB
CG
LEU
LEU
LEU
26
26
26
N
1
-13.94
2.30
115.30
101.36
C
C
C
CA
CB
CG
LEU
LEU
LEU
3
3
3
N
1
13.91
2.30
115.30
129.21
C
C
C
CA
CB
CG
LEU
LEU
LEU
26
26
26
N
1
15.04
2.30
115.30
130.34
C
C
C
CA
CB
CG
LEU
LEU
LEU
43
43
43
N
1
A
LYS
25
-115.05
64.70
1
B
TYR
23
-113.09
-88.78
1
B
THR
45
-37.80
-73.75
1
B
LEU
47
-67.89
-165.74
1
C
LEU
26
-163.61
81.41
1
C
PRO
27
-36.01
-37.84
1
C
LYS
38
-50.38
-74.18
1
C
HIS
39
-27.95
-48.93
1
C
THR
45
-41.24
-77.17
1
C
LEU
47
-65.78
-155.43
1
D
LYS
25
-65.01
53.04
1
D
LYS
38
-78.87
-70.97
1
D
HIS
39
-25.78
-62.57
58.981
-3.12
0.00
0.00
0.32
0.00
2.80
0.889
0.843
0.30439
0.24674
0.2496
3.10
20.0
220
4679
4.7
97.21
28.119
0.511
RANDOM
1
THROUGHOUT
UNCONVENTIONAL METHOD USING THE GROUP-SUBGROUP RELATION
0.593
0.80
0.80
1.40
BABINET MODEL WITH MASK
3.10
20.0
10
1669
7
0
1652
0.025
0.022
1700
2.876
2.034
2272
7.466
3.000
188
25.240
15.000
358
0.186
0.200
260
0.008
0.020
1192
0.355
0.300
944
0.223
0.500
91
0.349
0.300
115
0.372
0.500
10
2.095
1.500
972
4.078
2.000
1564
6.974
3.000
724
11.200
4.500
696
1
A
1
414
X-RAY DIFFRACTION
loose positional
0.67
5.00
2
B
1
414
X-RAY DIFFRACTION
loose positional
0.76
5.00
3
C
1
414
X-RAY DIFFRACTION
loose positional
0.71
5.00
4
D
1
414
X-RAY DIFFRACTION
loose positional
0.84
5.00
1
A
1
414
X-RAY DIFFRACTION
loose thermal
11.02
10.00
2
B
1
414
X-RAY DIFFRACTION
loose thermal
7.87
10.00
3
C
1
414
X-RAY DIFFRACTION
loose thermal
7.86
10.00
4
D
1
414
X-RAY DIFFRACTION
loose thermal
10.80
10.00
0.406
0.285
3.179
16
306
20
3.10
43.2
1OVU
4679
0.236
0.236
1
5.9
3.6
97.7
0.515
3.10
3.27
1.9
0.515
1
3.8
97.7
data reduction
MOSFLM
data scaling
SCALA
refinement
REFMAC
5.1
data scaling
CCP4
(SCALA)
four-helix bundle model di-Co(II)-DF1-L13A (form I)
CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form I)
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
ASP
1
A
ASP
2
HELX_P
A
GLU
22
A
GLU
23
1
1
22
A
LEU
26
A
LEU
27
HELX_P
A
GLY
48
A
GLY
49
1
2
23
B
ASP
1
B
ASP
2
HELX_P
B
GLU
22
B
GLU
23
1
3
22
B
PRO
27
B
PRO
28
HELX_P
B
LEU
47
B
LEU
48
1
4
21
C
ASP
1
C
ASP
2
HELX_P
C
VAL
24
C
VAL
25
1
5
24
C
LEU
26
C
LEU
27
HELX_P
C
LEU
47
C
LEU
48
1
6
22
D
ASP
1
D
ASP
2
HELX_P
D
VAL
24
D
VAL
25
1
7
24
D
LEU
26
D
LEU
27
HELX_P
D
GLY
48
D
GLY
49
1
8
23
covale
1.318
both
A
ACE
0
A
C
ACE
1
1_555
A
ASP
1
A
N
ASP
2
1_555
metalc
2.065
A
GLU
10
A
OE1
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
metalc
1.985
A
GLU
10
A
OE2
GLU
11
1_555
A
CO
101
E
CO
CO
1_555
metalc
2.107
A
GLU
19
A
OE1
GLU
20
1_555
A
CO
105
F
CO
CO
1_555
metalc
1.875
A
GLU
36
A
OE1
GLU
37
1_555
A
CO
101
E
CO
CO
1_555
metalc
1.933
A
HIS
39
A
ND1
HIS
40
1_555
A
CO
101
E
CO
CO
1_555
covale
1.339
both
A
GLY
48
A
C
GLY
49
1_555
A
NH2
49
A
N
NH2
50
1_555
covale
1.310
both
B
ACE
0
B
C
ACE
1
1_555
B
ASP
1
B
N
ASP
2
1_555
metalc
2.100
B
GLU
10
B
OE1
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
metalc
1.928
B
GLU
10
B
OE2
GLU
11
1_555
B
CO
102
G
CO
CO
1_555
metalc
2.061
B
GLU
36
B
OE1
GLU
37
1_555
B
CO
102
G
CO
CO
1_555
metalc
2.053
B
HIS
39
B
ND1
HIS
40
1_555
B
CO
102
G
CO
CO
1_555
covale
1.334
both
B
GLY
48
B
C
GLY
49
1_555
B
NH2
49
B
N
NH2
50
1_555
covale
1.331
both
C
ACE
0
C
C
ACE
1
1_555
C
ASP
1
C
N
ASP
2
1_555
metalc
2.047
C
GLU
10
C
OE1
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
metalc
1.952
C
GLU
10
C
OE2
GLU
11
1_555
C
CO
103
H
CO
CO
1_555
metalc
1.957
C
GLU
36
C
OE1
GLU
37
1_555
C
CO
103
H
CO
CO
1_555
metalc
1.845
C
GLU
36
C
OE2
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
metalc
2.116
C
HIS
39
C
ND1
HIS
40
1_555
C
CO
103
H
CO
CO
1_555
covale
1.326
both
C
GLY
48
C
C
GLY
49
1_555
C
NH2
49
C
N
NH2
50
1_555
covale
1.323
both
D
ACE
0
D
C
ACE
1
1_555
D
ASP
1
D
N
ASP
2
1_555
metalc
2.036
D
GLU
10
D
OE1
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
metalc
1.851
D
GLU
10
D
OE2
GLU
11
1_555
D
CO
104
I
CO
CO
1_555
metalc
2.756
D
GLN
16
D
OE1
GLN
17
1_555
D
CO
106
J
CO
CO
1_555
metalc
2.338
D
GLU
19
D
OE1
GLU
20
1_555
D
CO
106
J
CO
CO
1_555
metalc
1.798
D
GLU
36
D
OE1
GLU
37
1_555
D
CO
104
I
CO
CO
1_555
metalc
1.905
D
GLU
36
D
OE2
GLU
37
1_555
C
CO
103
H
CO
CO
1_555
metalc
2.033
D
HIS
39
D
ND1
HIS
40
1_555
D
CO
104
I
CO
CO
1_555
covale
1.338
both
D
GLY
48
D
C
GLY
49
1_555
D
NH2
49
D
N
NH2
50
1_555
metalc
2.354
A
CO
105
F
CO
CO
1_555
A
HOH
108
L
O
HOH
1_555
metalc
1.989
A
GLU
36
A
OE2
GLU
37
1_555
A
CO
101
E
CO
CO
3_655
metalc
2.011
B
GLU
36
B
OE2
GLU
37
1_555
B
CO
102
G
CO
CO
4_554
DE NOVO PROTEIN
ALPHA-HELICAL BUNDLE, PROTEIN DESIGN, DE NOVO PROTEIN
A
B
C
D
A
1
A
ASP
1
A
48
A
GLY
48
6
B
1
B
ASP
1
B
48
B
GLY
48
6
C
1
C
ASP
1
C
48
C
GLY
48
6
D
1
D
ASP
1
D
48
D
GLY
48
6
1OVU
PDB
1
1OVU
0
49
1OVU
0
49
1OVU
A
1
1
50
0
49
1OVU
0
49
1OVU
B
1
1
50
0
49
1OVU
0
49
1OVU
C
1
1
50
0
49
1OVU
0
49
1OVU
D
1
1
50
BINDING SITE FOR RESIDUE CO A 101
Software
4
BINDING SITE FOR RESIDUE CO B 102
Software
4
BINDING SITE FOR RESIDUE CO C 103
Software
4
BINDING SITE FOR RESIDUE CO D 104
Software
4
BINDING SITE FOR RESIDUE CO A 105
Software
3
BINDING SITE FOR RESIDUE CO D 106
Software
2
BINDING SITE FOR RESIDUE CO D 107
Software
3
A
GLU
10
A
GLU
11
4
1_555
A
GLU
36
A
GLU
37
4
1_555
A
GLU
36
A
GLU
37
4
3_655
A
HIS
39
A
HIS
40
4
1_555
B
GLU
10
B
GLU
11
4
1_555
B
GLU
36
B
GLU
37
4
4_554
B
GLU
36
B
GLU
37
4
1_555
B
HIS
39
B
HIS
40
4
1_555
C
GLU
10
C
GLU
11
4
1_555
C
GLU
36
C
GLU
37
4
1_555
C
HIS
39
C
HIS
40
4
1_555
D
GLU
36
D
GLU
37
4
1_555
C
GLU
36
C
GLU
37
4
1_555
D
GLU
10
D
GLU
11
4
1_555
D
GLU
36
D
GLU
37
4
1_555
D
HIS
39
D
HIS
40
4
1_555
A
GLU
19
A
GLU
20
3
1_555
A
HOH
108
L
HOH
3
1_555
B
GLU
19
B
GLU
20
3
3_655
D
GLN
16
D
GLN
17
2
1_555
D
GLU
19
D
GLU
20
2
1_555
D
GLU
44
D
GLU
45
3
1_555
D
HOH
109
O
HOH
3
1_555
D
HOH
110
O
HOH
3
1_555
20
C 2 2 21