0.018129
0.000000
0.000000
0.000000
0.018868
0.000000
0.000000
0.000000
0.012151
0.00000
0.00000
0.00000
Wendt, M.D.
Rockway, T.W.
Geyer, A.
McClellan, W.
Weitzberg, M.
Zhao, X.
Mantei, R.
Nienaber, V.L.
Stewart, K.
Klinghofer, V.
Giranda, V.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
55.160
53.000
82.300
C19 H18 N4 O
318.372
6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE
6-[N-(4-(AMINOMETHYL)PHENYL)CARBAMYL]-2-NAPHTHALENECARBOXAMIDINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Med.Chem.
JMCMAR
0151
0022-2623
47
303
324
10.1021/jm0300072
14711304
Identification of Novel Binding Interactions in the Development of Potent, Selective 2-Naphthamidine Inhibitors of Urokinase. Synthesis, Structural Analysis, and SAR of N-Phenyl Amide 6-Substitution.
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
160
1
IMAGE PLATE
1997-06-18
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
27636.523
Urokinase-type plasminogen activator
3.4.21.73
residues 179-423
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
318.372
6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE
1
syn
non-polymer
18.015
water
170
nat
water
uPA, U-plasminogen activator
no
no
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHT
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
PLAU
9606
Homo sapiens
7108
Spodoptera frugiperda
Baculovirus
1
2.00
38.17
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2003-09-30
1
1
2008-04-29
1
2
2011-07-13
1
3
2017-10-11
RCSB
Y
RCSB
2003-03-28
REL
REL
SO4
SULFATE ION
239
6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE
HOH
water
SO4
301
2
SO4
SO4
301
A
SO4
302
2
SO4
SO4
302
A
SO4
303
2
SO4
SO4
303
A
239
1
3
239
239
1001
A
HOH
1
4
HOH
HOH
1002
A
HOH
2
4
HOH
HOH
1003
A
HOH
3
4
HOH
HOH
1004
A
HOH
4
4
HOH
HOH
1005
A
HOH
5
4
HOH
HOH
1006
A
HOH
6
4
HOH
HOH
1007
A
HOH
7
4
HOH
HOH
1008
A
HOH
8
4
HOH
HOH
1009
A
HOH
9
4
HOH
HOH
1010
A
HOH
10
4
HOH
HOH
1011
A
HOH
11
4
HOH
HOH
1012
A
HOH
12
4
HOH
HOH
1013
A
HOH
13
4
HOH
HOH
1014
A
HOH
14
4
HOH
HOH
1015
A
HOH
15
4
HOH
HOH
1016
A
HOH
16
4
HOH
HOH
1017
A
HOH
17
4
HOH
HOH
1018
A
HOH
18
4
HOH
HOH
1019
A
HOH
19
4
HOH
HOH
1020
A
HOH
20
4
HOH
HOH
1021
A
HOH
21
4
HOH
HOH
1022
A
HOH
22
4
HOH
HOH
1023
A
HOH
23
4
HOH
HOH
1024
A
HOH
24
4
HOH
HOH
1025
A
HOH
25
4
HOH
HOH
1026
A
HOH
26
4
HOH
HOH
1027
A
HOH
27
4
HOH
HOH
1028
A
HOH
28
4
HOH
HOH
1029
A
HOH
29
4
HOH
HOH
1030
A
HOH
30
4
HOH
HOH
1031
A
HOH
31
4
HOH
HOH
1032
A
HOH
32
4
HOH
HOH
1033
A
HOH
33
4
HOH
HOH
1034
A
HOH
34
4
HOH
HOH
1035
A
HOH
35
4
HOH
HOH
1036
A
HOH
36
4
HOH
HOH
1037
A
HOH
37
4
HOH
HOH
1038
A
HOH
38
4
HOH
HOH
1039
A
HOH
39
4
HOH
HOH
1040
A
HOH
40
4
HOH
HOH
1041
A
HOH
41
4
HOH
HOH
1042
A
HOH
42
4
HOH
HOH
1043
A
HOH
43
4
HOH
HOH
1044
A
HOH
44
4
HOH
HOH
1045
A
HOH
45
4
HOH
HOH
1046
A
HOH
46
4
HOH
HOH
1047
A
HOH
47
4
HOH
HOH
1048
A
HOH
48
4
HOH
HOH
1049
A
HOH
49
4
HOH
HOH
1050
A
HOH
50
4
HOH
HOH
1051
A
HOH
51
4
HOH
HOH
1052
A
HOH
52
4
HOH
HOH
1053
A
HOH
53
4
HOH
HOH
1054
A
HOH
54
4
HOH
HOH
1055
A
HOH
55
4
HOH
HOH
1056
A
HOH
56
4
HOH
HOH
1057
A
HOH
57
4
HOH
HOH
1058
A
HOH
58
4
HOH
HOH
1059
A
HOH
59
4
HOH
HOH
1060
A
HOH
60
4
HOH
HOH
1061
A
HOH
61
4
HOH
HOH
1062
A
HOH
62
4
HOH
HOH
1063
A
HOH
63
4
HOH
HOH
1064
A
HOH
64
4
HOH
HOH
1065
A
HOH
65
4
HOH
HOH
1066
A
HOH
66
4
HOH
HOH
1067
A
HOH
67
4
HOH
HOH
1068
A
HOH
68
4
HOH
HOH
1069
A
HOH
69
4
HOH
HOH
1070
A
HOH
70
4
HOH
HOH
1071
A
HOH
71
4
HOH
HOH
1072
A
HOH
72
4
HOH
HOH
1073
A
HOH
73
4
HOH
HOH
1074
A
HOH
74
4
HOH
HOH
1075
A
HOH
75
4
HOH
HOH
1076
A
HOH
76
4
HOH
HOH
1077
A
HOH
77
4
HOH
HOH
1078
A
HOH
78
4
HOH
HOH
1079
A
HOH
79
4
HOH
HOH
1080
A
HOH
80
4
HOH
HOH
1081
A
HOH
81
4
HOH
HOH
1082
A
HOH
82
4
HOH
HOH
1083
A
HOH
83
4
HOH
HOH
1084
A
HOH
84
4
HOH
HOH
1085
A
HOH
85
4
HOH
HOH
1086
A
HOH
86
4
HOH
HOH
1087
A
HOH
87
4
HOH
HOH
1088
A
HOH
88
4
HOH
HOH
1089
A
HOH
89
4
HOH
HOH
1090
A
HOH
90
4
HOH
HOH
1091
A
HOH
91
4
HOH
HOH
1092
A
HOH
92
4
HOH
HOH
1093
A
HOH
93
4
HOH
HOH
1094
A
HOH
94
4
HOH
HOH
1095
A
HOH
95
4
HOH
HOH
1096
A
HOH
96
4
HOH
HOH
1097
A
HOH
97
4
HOH
HOH
1098
A
HOH
98
4
HOH
HOH
1099
A
HOH
99
4
HOH
HOH
1100
A
HOH
100
4
HOH
HOH
1101
A
HOH
101
4
HOH
HOH
1102
A
HOH
102
4
HOH
HOH
1103
A
HOH
103
4
HOH
HOH
1104
A
HOH
104
4
HOH
HOH
1105
A
HOH
105
4
HOH
HOH
1106
A
HOH
106
4
HOH
HOH
1107
A
HOH
107
4
HOH
HOH
1108
A
HOH
108
4
HOH
HOH
1109
A
HOH
109
4
HOH
HOH
1110
A
HOH
110
4
HOH
HOH
1111
A
HOH
111
4
HOH
HOH
1112
A
HOH
112
4
HOH
HOH
1113
A
HOH
113
4
HOH
HOH
1114
A
HOH
114
4
HOH
HOH
1115
A
HOH
115
4
HOH
HOH
1116
A
HOH
116
4
HOH
HOH
1117
A
HOH
117
4
HOH
HOH
1118
A
HOH
118
4
HOH
HOH
1119
A
HOH
119
4
HOH
HOH
1120
A
HOH
120
4
HOH
HOH
1121
A
HOH
121
4
HOH
HOH
1122
A
HOH
122
4
HOH
HOH
1123
A
HOH
123
4
HOH
HOH
1124
A
HOH
124
4
HOH
HOH
1125
A
HOH
125
4
HOH
HOH
1126
A
HOH
126
4
HOH
HOH
1127
A
HOH
127
4
HOH
HOH
1128
A
HOH
128
4
HOH
HOH
1129
A
HOH
129
4
HOH
HOH
1130
A
HOH
130
4
HOH
HOH
1131
A
HOH
131
4
HOH
HOH
1132
A
HOH
132
4
HOH
HOH
1133
A
HOH
133
4
HOH
HOH
1134
A
HOH
134
4
HOH
HOH
1135
A
HOH
135
4
HOH
HOH
1136
A
HOH
136
4
HOH
HOH
1137
A
HOH
137
4
HOH
HOH
1138
A
HOH
138
4
HOH
HOH
1139
A
HOH
139
4
HOH
HOH
1140
A
HOH
140
4
HOH
HOH
1141
A
HOH
141
4
HOH
HOH
1142
A
HOH
142
4
HOH
HOH
1143
A
HOH
143
4
HOH
HOH
1144
A
HOH
144
4
HOH
HOH
1145
A
HOH
145
4
HOH
HOH
1146
A
HOH
146
4
HOH
HOH
1147
A
HOH
147
4
HOH
HOH
1148
A
HOH
148
4
HOH
HOH
1149
A
HOH
149
4
HOH
HOH
1150
A
HOH
150
4
HOH
HOH
1151
A
HOH
151
4
HOH
HOH
1152
A
HOH
152
4
HOH
HOH
1153
A
HOH
153
4
HOH
HOH
1154
A
HOH
154
4
HOH
HOH
1155
A
HOH
155
4
HOH
HOH
1156
A
HOH
156
4
HOH
HOH
1157
A
HOH
157
4
HOH
HOH
1158
A
HOH
158
4
HOH
HOH
1159
A
HOH
159
4
HOH
HOH
1160
A
HOH
160
4
HOH
HOH
1161
A
HOH
161
4
HOH
HOH
1162
A
HOH
162
4
HOH
HOH
1163
A
HOH
163
4
HOH
HOH
1164
A
HOH
164
4
HOH
HOH
1165
A
HOH
165
4
HOH
HOH
1166
A
HOH
166
4
HOH
HOH
1167
A
HOH
167
4
HOH
HOH
1168
A
HOH
168
4
HOH
HOH
1169
A
HOH
169
4
HOH
HOH
1170
A
HOH
170
4
HOH
HOH
1171
A
ILE
1
n
1
ILE
1
A
ILE
2
n
2
ILE
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
THR
7
n
7
THR
7
A
THR
8
n
8
THR
8
A
ILE
9
n
9
ILE
9
A
GLU
10
n
10
GLU
10
A
ASN
11
n
11
ASN
11
A
GLN
12
n
12
GLN
12
A
PRO
13
n
13
PRO
13
A
TRP
14
n
14
TRP
14
A
PHE
15
n
15
PHE
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
ILE
18
n
18
ILE
18
A
TYR
19
n
19
TYR
19
A
ARG
20
n
20
ARG
20
A
ARG
21
n
21
ARG
21
A
HIS
22
n
22
HIS
22
A
ARG
23
n
23
ARG
23
A
GLY
25
n
24
GLY
25
A
GLY
27
n
25
GLY
27
A
SER
28
n
26
SER
28
A
VAL
29
n
27
VAL
29
A
THR
30
n
28
THR
30
A
TYR
31
n
29
TYR
31
A
VAL
32
n
30
VAL
32
A
CYS
34
n
31
CYS
34
A
GLY
36
n
32
GLY
36
A
GLY
37
n
33
GLY
37
A
SER
38
n
34
SER
38
A
LEU
39
n
35
LEU
39
A
MET
41
n
36
MET
41
A
SER
43
n
37
SER
43
A
PRO
44
n
38
PRO
44
A
CYS
46
n
39
CYS
46
A
TRP
48
n
40
TRP
48
A
VAL
49
n
41
VAL
49
A
ILE
50
n
42
ILE
50
A
SER
51
n
43
SER
51
A
ALA
52
n
44
ALA
52
A
THR
53
n
45
THR
53
A
HIS
54
n
46
HIS
54
A
CYS
55
n
47
CYS
55
A
PHE
56
n
48
PHE
56
A
ILE
57
n
49
ILE
57
A
ASP
58
n
50
ASP
58
A
TYR
59
n
51
TYR
59
A
PRO
60
n
52
PRO
60
A
LYS
61
n
53
LYS
61
A
LYS
62
n
54
LYS
62
A
GLU
63
n
55
GLU
63
A
ASP
65
n
56
ASP
65
A
TYR
67
n
57
TYR
67
A
ILE
68
n
58
ILE
68
A
VAL
69
n
59
VAL
69
A
TYR
70
n
60
TYR
70
A
LEU
71
n
61
LEU
71
A
GLY
72
n
62
GLY
72
A
ARG
73
n
63
ARG
73
A
SER
74
n
64
SER
74
A
ARG
76
n
65
ARG
76
A
LEU
78
n
66
LEU
78
A
ASN
79
n
67
ASN
79
A
SER
80
n
68
SER
80
A
ASN
81
n
69
ASN
81
A
THR
82
n
70
THR
82
A
GLN
83
n
71
GLN
83
A
GLY
84
n
72
GLY
84
A
GLU
85
n
73
GLU
85
A
MET
86
n
74
MET
86
A
LYS
87
n
75
LYS
87
A
PHE
88
n
76
PHE
88
A
GLU
89
n
77
GLU
89
A
VAL
90
n
78
VAL
90
A
GLU
91
n
79
GLU
91
A
ASN
92
n
80
ASN
92
A
LEU
93
n
81
LEU
93
A
ILE
94
n
82
ILE
94
A
LEU
95
n
83
LEU
95
A
HIS
96
n
84
HIS
96
A
LYS
97
n
85
LYS
97
A
ASP
98
n
86
ASP
98
A
TYR
99
n
87
TYR
99
A
SER
100
n
88
SER
100
A
ALA
101
n
89
ALA
101
A
ASP
102
n
90
ASP
102
A
THR
103
n
91
THR
103
A
LEU
104
n
92
LEU
104
A
ALA
105
n
93
ALA
105
A
HIS
106
n
94
HIS
106
A
HIS
107
n
95
HIS
107
A
ASN
108
n
96
ASN
108
A
ASP
109
n
97
ASP
109
A
ILE
110
n
98
ILE
110
A
ALA
111
n
99
ALA
111
A
LEU
112
n
100
LEU
112
A
LEU
113
n
101
LEU
113
A
LYS
114
n
102
LYS
114
A
ILE
115
n
103
ILE
115
A
ARG
116
n
104
ARG
116
A
SER
117
n
105
SER
117
A
LYS
118
n
106
LYS
118
A
GLU
119
n
107
GLU
119
A
GLY
120
n
108
GLY
120
A
ARG
121
n
109
ARG
121
A
CYS
122
n
110
CYS
122
A
ALA
123
n
111
ALA
123
A
GLN
124
n
112
GLN
124
A
PRO
125
n
113
PRO
125
A
SER
126
n
114
SER
126
A
ARG
127
n
115
ARG
127
A
THR
128
n
116
THR
128
A
ILE
129
n
117
ILE
129
A
GLN
130
n
118
GLN
130
A
THR
131
n
119
THR
131
A
ILE
132
n
120
ILE
132
A
ALA
133
n
121
CYS
133
A
LEU
134
n
122
LEU
134
A
PRO
135
n
123
PRO
135
A
SER
136
n
124
SER
136
A
MET
137
n
125
MET
137
A
TYR
138
n
126
TYR
138
A
ASN
139
n
127
ASN
139
A
ASP
140
n
128
ASP
140
A
PRO
141
n
129
PRO
141
A
GLN
142
n
130
GLN
142
A
PHE
143
n
131
PHE
143
A
GLY
144
n
132
GLY
144
A
THR
145
n
133
THR
145
A
SER
146
n
134
SER
146
A
CYS
147
n
135
CYS
147
A
GLU
148
n
136
GLU
148
A
ILE
149
n
137
ILE
149
A
THR
150
n
138
THR
150
A
GLY
151
n
139
GLY
151
A
PHE
152
n
140
PHE
152
A
GLY
153
n
141
GLY
153
A
LYS
154
n
142
LYS
154
A
GLU
155
n
143
GLU
155
A
GLN
156
n
144
GLN
156
A
SER
157
n
145
SER
157
A
THR
158
n
146
THR
158
A
ASP
159
n
147
ASP
159
A
TYR
160
n
148
TYR
160
A
LEU
161
n
149
LEU
161
A
TYR
162
n
150
TYR
162
A
PRO
163
n
151
PRO
163
A
GLU
164
n
152
GLU
164
A
GLN
165
n
153
GLN
165
A
LEU
167
n
154
LEU
167
A
LYS
168
n
155
LYS
168
A
MET
169
n
156
MET
169
A
THR
170
n
157
THR
170
A
VAL
171
n
158
VAL
171
A
VAL
172
n
159
VAL
172
A
LYS
173
n
160
LYS
173
A
LEU
174
n
161
LEU
174
A
ILE
175
n
162
ILE
175
A
SER
176
n
163
SER
176
A
HIS
177
n
164
HIS
177
A
ARG
178
n
165
ARG
178
A
GLU
179
n
166
GLU
179
A
CYS
180
n
167
CYS
180
A
GLN
181
n
168
GLN
181
A
GLN
182
n
169
GLN
182
A
PRO
183
n
170
PRO
183
A
HIS
184
n
171
HIS
184
A
TYR
185
n
172
TYR
185
A
TYR
186
n
173
TYR
186
A
GLY
187
n
174
GLY
187
A
SER
188
n
175
SER
188
A
GLU
189
n
176
GLU
189
A
VAL
190
n
177
VAL
190
A
THR
191
n
178
THR
191
A
THR
192
n
179
THR
192
A
LYS
193
n
180
LYS
193
A
MET
194
n
181
MET
194
A
LEU
195
n
182
LEU
195
A
CYS
196
n
183
CYS
196
A
ALA
197
n
184
ALA
197
A
ALA
198
n
185
ALA
198
A
ASP
199
n
186
ASP
199
A
PRO
200
n
187
PRO
200
A
GLN
201
n
188
GLN
201
A
TRP
202
n
189
TRP
202
A
LYS
203
n
190
LYS
203
A
THR
204
n
191
THR
204
A
ASP
205
n
192
ASP
205
A
SER
206
n
193
SER
206
A
CYS
207
n
194
CYS
207
A
GLN
208
n
195
GLN
208
A
GLY
209
n
196
GLY
209
A
ASP
210
n
197
ASP
210
A
SER
211
n
198
SER
211
A
GLY
212
n
199
GLY
212
A
GLY
213
n
200
GLY
213
A
PRO
214
n
201
PRO
214
A
LEU
215
n
202
LEU
215
A
VAL
216
n
203
VAL
216
A
CYS
217
n
204
CYS
217
A
SER
218
n
205
SER
218
A
LEU
219
n
206
LEU
219
A
GLN
220
n
207
GLN
220
A
GLY
221
n
208
GLY
221
A
ARG
222
n
209
ARG
222
A
MET
223
n
210
MET
223
A
THR
224
n
211
THR
224
A
LEU
225
n
212
LEU
225
A
THR
226
n
213
THR
226
A
GLY
227
n
214
GLY
227
A
ILE
228
n
215
ILE
228
A
VAL
229
n
216
VAL
229
A
SER
230
n
217
SER
230
A
TRP
231
n
218
TRP
231
A
GLY
232
n
219
GLY
232
A
ARG
233
n
220
ARG
233
A
GLY
234
n
221
GLY
234
A
CYS
235
n
222
CYS
235
A
ALA
236
n
223
ALA
236
A
LEU
237
n
224
LEU
237
A
LYS
238
n
225
LYS
238
A
ASP
239
n
226
ASP
239
A
LYS
240
n
227
LYS
240
A
PRO
241
n
228
PRO
241
A
GLY
242
n
229
GLY
242
A
VAL
243
n
230
VAL
243
A
TYR
244
n
231
TYR
244
A
THR
245
n
232
THR
245
A
ARG
246
n
233
ARG
246
A
VAL
247
n
234
VAL
247
A
SER
248
n
235
SER
248
A
HIS
249
n
236
HIS
249
A
PHE
250
n
237
PHE
250
A
LEU
251
n
238
LEU
251
A
PRO
252
n
239
PRO
252
A
TRP
253
n
240
TRP
253
A
ILE
254
n
241
ILE
254
A
ARG
255
n
242
ARG
255
A
SER
256
n
243
SER
256
A
HIS
257
n
244
HIS
257
A
THR
258
n
245
THR
258
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
5
A
N
GLU
5
A
O
MET
169
A
O
MET
156
A
O
VAL
172
A
O
VAL
159
A
N
CYS
147
A
N
CYS
135
A
N
THR
150
A
N
THR
138
A
O
PRO
214
A
O
PRO
201
A
N
LEU
219
A
N
LEU
206
A
O
ARG
222
A
O
ARG
209
A
O
TRP
231
A
O
TRP
218
A
N
VAL
243
A
N
VAL
230
A
O
TYR
244
A
O
TYR
231
A
N
LEU
195
A
N
LEU
182
A
O
ALA
198
A
O
ALA
185
A
N
LYS
173
A
N
LYS
160
A
N
ARG
20
A
N
ARG
20
A
O
THR
30
A
O
THR
28
A
N
MET
41
A
N
MET
36
A
O
TRP
48
A
O
TRP
40
A
N
SER
51
A
N
SER
43
A
O
ALA
111
A
O
ALA
99
A
O
ARG
116
A
O
ARG
104
A
N
GLU
89
A
N
GLU
77
A
N
PHE
88
A
N
PHE
76
A
O
VAL
69
A
O
VAL
59
A
N
TYR
70
A
N
TYR
60
A
O
ALA
17
A
O
ALA
17
A
O
SER
100
A
O
SER
88
A
N
HIS
107
A
N
HIS
95
1
A
SG
CYS
133
A
SG
CYS
121
1
Y
1
A
ARG
73
0.102
SIDE CHAIN
1
3.37
0.50
120.30
123.67
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
21
21
21
N
1
-5.10
0.50
120.30
115.20
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
21
21
21
N
1
11.54
1.10
114.20
125.74
A
A
A
CA
CB
SG
CYS
CYS
CYS
46
46
46
N
1
10.87
1.40
123.60
134.47
A
A
A
CD
NE
CZ
ARG
ARG
ARG
73
73
73
N
1
12.72
0.50
120.30
133.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
-12.76
0.50
120.30
107.54
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
73
73
73
N
1
6.39
0.50
120.30
126.69
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
76
76
76
N
1
-7.41
0.50
120.30
112.89
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
76
76
76
N
1
16.01
2.60
111.60
127.61
A
A
A
CB
CG
CD
GLN
GLN
GLN
83
83
83
N
1
-4.56
0.50
120.30
115.74
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
116
116
116
N
1
4.81
0.50
120.30
125.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
121
121
121
N
1
3.02
0.50
120.30
123.32
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
127
127
127
N
1
-9.61
1.60
110.90
101.29
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
171
171
171
N
1
-4.05
0.50
120.30
116.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
178
178
178
N
1
8.28
0.90
118.30
126.58
A
A
A
CB
CG
OD1
ASP
ASP
ASP
205
205
205
N
1
17.03
2.60
111.60
128.63
A
A
A
CB
CG
CD
GLN
GLN
GLN
220
220
220
N
1
4.94
0.50
120.30
125.24
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
222
222
222
N
1
-4.60
0.50
120.30
115.70
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
222
222
222
N
1
3.31
0.50
120.30
123.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
246
246
246
N
1
A
A
CB
CG
MET
MET
41
41
-0.251
0.032
1.509
1.258
N
1
A
A
CB
OG
SER
SER
188
188
0.078
0.013
1.418
1.496
N
1
A
VAL
32
-109.39
-65.04
1
A
SER
51
-153.87
-154.12
1
A
PRO
60
-84.66
35.00
1
A
LEU
104
-121.80
-52.41
1
A
TYR
185
-91.07
-108.07
1
A
SER
230
-126.77
-60.59
PARAM11.WAT
TOPHCSDX.PRO
PARVICKI.PRO
PARAM19X.PRO
PARHCSDX.PRO
207239.XPRM
10.5
0.00
0.00
0.00
0.00
0.00
0.00
0.265
0.005
0.211
0.211
0.211
1.61
10.00
2450
24085
24085
10.2
74.4
RANDOM
10000000.00
0.001000
1
RESTRAINED
THROUGHOUT
2.0
FOURIER SYNTHESIS
Engh & Huber
0.22
0.16
5.00
0.05
-0.02
1.61
10.00
170
2143
39
0
1934
0.028
3.5
26.0
1.89
1.23
1.50
1.68
2.00
2.81
2.00
4.21
2.50
0.347
0.028
0.314
1.70
156
1463
6
9.6
30.5
12.0
1.61
20.57
1OWH
30336
30336
0
1
refinement
X-PLOR
98.0
data scaling
SCALEPACK
phasing
X-PLOR
Urokinase-type plasminogen activator (E.C.3.4.21.73)
Substituted 2-Naphthamidine Inhibitors of Urokinase
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
THR
8
A
THR
8
HELX_P
A
GLN
12
A
GLN
12
5
1
5
A
ALA
52
A
ALA
44
HELX_P
A
PHE
56
A
PHE
48
5
2
5
A
LYS
61
A
LYS
53
HELX_P
A
GLU
63
A
GLU
55
5
3
3
A
SER
176
A
SER
163
HELX_P
A
GLN
181
A
GLN
168
1
4
6
A
TYR
186
A
TYR
173
HELX_P
A
VAL
190
A
VAL
177
5
5
5
A
PHE
250
A
PHE
237
HELX_P
A
THR
258
A
THR
245
1
6
9
disulf
2.187
A
CYS
34
A
SG
CYS
31
1_555
A
CYS
55
A
SG
CYS
47
1_555
disulf
2.192
A
CYS
147
A
SG
CYS
135
1_555
A
CYS
217
A
SG
CYS
204
1_555
disulf
2.139
A
CYS
180
A
SG
CYS
167
1_555
A
CYS
196
A
SG
CYS
183
1_555
disulf
2.247
A
CYS
207
A
SG
CYS
194
1_555
A
CYS
235
A
SG
CYS
222
1_555
HYDROLASE
Plasminogen activation, Hydrolase, Serine protease, Glycoprotein, Kringle, EGF-like domain
UROK_HUMAN
UNP
1
179
P00749
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHT
179
423
1OWH
1
245
P00749
A
1
1
232
1
ASN
CONFLICT
GLN
156
1OWH
A
P00749
UNP
322
144
8
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
5
A
GLU
5
A
PHE
6
A
PHE
6
A
LYS
168
A
LYS
155
A
ILE
175
A
ILE
162
A
SER
146
A
SER
134
A
GLY
151
A
GLY
139
A
PRO
214
A
PRO
201
A
LEU
219
A
LEU
206
A
ARG
222
A
ARG
209
A
TRP
231
A
TRP
218
A
GLY
242
A
GLY
229
A
ARG
246
A
ARG
233
A
MET
194
A
MET
181
A
ALA
198
A
ALA
185
A
LYS
168
A
LYS
155
A
ILE
175
A
ILE
162
A
PHE
15
A
PHE
15
A
ARG
21
A
ARG
21
A
VAL
29
A
VAL
27
A
SER
43
A
SER
37
A
TRP
48
A
TRP
40
A
SER
51
A
SER
43
A
ALA
111
A
ALA
99
A
ARG
116
A
ARG
104
A
MET
86
A
MET
74
A
LEU
95
A
LEU
83
A
TYR
67
A
TYR
57
A
LEU
71
A
LEU
61
A
PHE
15
A
PHE
15
A
ARG
21
A
ARG
21
A
SER
100
A
SER
88
A
ALA
101
A
ALA
89
A
HIS
106
A
HIS
94
A
HIS
107
A
HIS
95
BINDING SITE FOR RESIDUE SO4 A 301
Software
6
BINDING SITE FOR RESIDUE SO4 A 302
Software
8
BINDING SITE FOR RESIDUE SO4 A 303
Software
3
BINDING SITE FOR RESIDUE 239 A 1001
Software
11
A
LYS
61
A
LYS
53
6
1_555
A
HIS
107
A
HIS
95
6
3_645
A
THR
191
A
THR
178
6
3_645
A
LYS
193
A
LYS
180
6
3_645
A
MET
194
A
MET
181
6
3_645
A
HOH
1062
F
HOH
6
1_555
A
VAL
32
A
VAL
30
8
1_555
A
CYS
34
A
CYS
31
8
1_555
A
HIS
54
A
HIS
46
8
1_555
A
GLN
208
A
GLN
195
8
1_555
A
GLY
209
A
GLY
196
8
1_555
A
SER
211
A
SER
198
8
1_555
A
239
1001
E
239
8
1_555
A
HOH
1052
F
HOH
8
1_555
A
ARG
246
A
ARG
233
3
1_555
A
HIS
249
A
HIS
236
3
1_555
A
HOH
1093
F
HOH
3
1_555
A
HIS
54
A
HIS
46
11
1_555
A
ASP
58
A
ASP
50
11
1_555
A
HIS
106
A
HIS
94
11
1_555
A
ASP
205
A
ASP
192
11
1_555
A
SER
206
A
SER
193
11
1_555
A
GLN
208
A
GLN
195
11
1_555
A
SER
211
A
SER
198
11
1_555
A
GLY
234
A
GLY
221
11
1_555
A
GLY
242
A
GLY
229
11
1_555
A
SO4
302
C
SO4
11
1_555
A
HOH
1020
F
HOH
11
1_555
19
P 21 21 21