0.018129 0.000000 0.000000 0.000000 0.018868 0.000000 0.000000 0.000000 0.012151 0.00000 0.00000 0.00000 Wendt, M.D. Rockway, T.W. Geyer, A. McClellan, W. Weitzberg, M. Zhao, X. Mantei, R. Nienaber, V.L. Stewart, K. Klinghofer, V. Giranda, V.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 55.160 53.000 82.300 C19 H18 N4 O 318.372 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE 6-[N-(4-(AMINOMETHYL)PHENYL)CARBAMYL]-2-NAPHTHALENECARBOXAMIDINE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Med.Chem. JMCMAR 0151 0022-2623 47 303 324 10.1021/jm0300072 14711304 Identification of Novel Binding Interactions in the Development of Potent, Selective 2-Naphthamidine Inhibitors of Urokinase. Synthesis, Structural Analysis, and SAR of N-Phenyl Amide 6-Substitution. 2004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 160 1 IMAGE PLATE 1997-06-18 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 27636.523 Urokinase-type plasminogen activator 3.4.21.73 residues 179-423 1 man polymer 96.063 SULFATE ION 3 syn non-polymer 318.372 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE 1 syn non-polymer 18.015 water 170 nat water uPA, U-plasminogen activator no no IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo fall armyworm Spodoptera sample PLAU 9606 Homo sapiens 7108 Spodoptera frugiperda Baculovirus 1 2.00 38.17 software repository Initial release Version format compliance Version format compliance Refinement description 1 0 2003-09-30 1 1 2008-04-29 1 2 2011-07-13 1 3 2017-10-11 RCSB Y RCSB 2003-03-28 REL REL SO4 SULFATE ION 239 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE HOH water SO4 301 2 SO4 SO4 301 A SO4 302 2 SO4 SO4 302 A SO4 303 2 SO4 SO4 303 A 239 1 3 239 239 1001 A HOH 1 4 HOH HOH 1002 A HOH 2 4 HOH HOH 1003 A HOH 3 4 HOH HOH 1004 A HOH 4 4 HOH HOH 1005 A HOH 5 4 HOH HOH 1006 A HOH 6 4 HOH HOH 1007 A HOH 7 4 HOH HOH 1008 A HOH 8 4 HOH HOH 1009 A HOH 9 4 HOH HOH 1010 A HOH 10 4 HOH HOH 1011 A HOH 11 4 HOH HOH 1012 A HOH 12 4 HOH HOH 1013 A HOH 13 4 HOH HOH 1014 A HOH 14 4 HOH HOH 1015 A HOH 15 4 HOH HOH 1016 A HOH 16 4 HOH HOH 1017 A HOH 17 4 HOH HOH 1018 A HOH 18 4 HOH HOH 1019 A HOH 19 4 HOH HOH 1020 A HOH 20 4 HOH HOH 1021 A HOH 21 4 HOH HOH 1022 A HOH 22 4 HOH HOH 1023 A HOH 23 4 HOH HOH 1024 A HOH 24 4 HOH HOH 1025 A HOH 25 4 HOH HOH 1026 A HOH 26 4 HOH HOH 1027 A HOH 27 4 HOH HOH 1028 A HOH 28 4 HOH HOH 1029 A HOH 29 4 HOH HOH 1030 A HOH 30 4 HOH HOH 1031 A HOH 31 4 HOH HOH 1032 A HOH 32 4 HOH HOH 1033 A HOH 33 4 HOH HOH 1034 A HOH 34 4 HOH HOH 1035 A HOH 35 4 HOH HOH 1036 A HOH 36 4 HOH HOH 1037 A HOH 37 4 HOH HOH 1038 A HOH 38 4 HOH HOH 1039 A HOH 39 4 HOH HOH 1040 A HOH 40 4 HOH HOH 1041 A HOH 41 4 HOH HOH 1042 A HOH 42 4 HOH HOH 1043 A HOH 43 4 HOH HOH 1044 A HOH 44 4 HOH HOH 1045 A HOH 45 4 HOH HOH 1046 A HOH 46 4 HOH HOH 1047 A HOH 47 4 HOH HOH 1048 A HOH 48 4 HOH HOH 1049 A HOH 49 4 HOH HOH 1050 A HOH 50 4 HOH HOH 1051 A HOH 51 4 HOH HOH 1052 A HOH 52 4 HOH HOH 1053 A HOH 53 4 HOH HOH 1054 A HOH 54 4 HOH HOH 1055 A HOH 55 4 HOH HOH 1056 A HOH 56 4 HOH HOH 1057 A HOH 57 4 HOH HOH 1058 A HOH 58 4 HOH HOH 1059 A HOH 59 4 HOH HOH 1060 A HOH 60 4 HOH HOH 1061 A HOH 61 4 HOH HOH 1062 A HOH 62 4 HOH HOH 1063 A HOH 63 4 HOH HOH 1064 A HOH 64 4 HOH HOH 1065 A HOH 65 4 HOH HOH 1066 A HOH 66 4 HOH HOH 1067 A HOH 67 4 HOH HOH 1068 A HOH 68 4 HOH HOH 1069 A HOH 69 4 HOH HOH 1070 A HOH 70 4 HOH HOH 1071 A HOH 71 4 HOH HOH 1072 A HOH 72 4 HOH HOH 1073 A HOH 73 4 HOH HOH 1074 A HOH 74 4 HOH HOH 1075 A HOH 75 4 HOH HOH 1076 A HOH 76 4 HOH HOH 1077 A HOH 77 4 HOH HOH 1078 A HOH 78 4 HOH HOH 1079 A HOH 79 4 HOH HOH 1080 A HOH 80 4 HOH HOH 1081 A HOH 81 4 HOH HOH 1082 A HOH 82 4 HOH HOH 1083 A HOH 83 4 HOH HOH 1084 A HOH 84 4 HOH HOH 1085 A HOH 85 4 HOH HOH 1086 A HOH 86 4 HOH HOH 1087 A HOH 87 4 HOH HOH 1088 A HOH 88 4 HOH HOH 1089 A HOH 89 4 HOH HOH 1090 A HOH 90 4 HOH HOH 1091 A HOH 91 4 HOH HOH 1092 A HOH 92 4 HOH HOH 1093 A HOH 93 4 HOH HOH 1094 A HOH 94 4 HOH HOH 1095 A HOH 95 4 HOH HOH 1096 A HOH 96 4 HOH HOH 1097 A HOH 97 4 HOH HOH 1098 A HOH 98 4 HOH HOH 1099 A HOH 99 4 HOH HOH 1100 A HOH 100 4 HOH HOH 1101 A HOH 101 4 HOH HOH 1102 A HOH 102 4 HOH HOH 1103 A HOH 103 4 HOH HOH 1104 A HOH 104 4 HOH HOH 1105 A HOH 105 4 HOH HOH 1106 A HOH 106 4 HOH HOH 1107 A HOH 107 4 HOH HOH 1108 A HOH 108 4 HOH HOH 1109 A HOH 109 4 HOH HOH 1110 A HOH 110 4 HOH HOH 1111 A HOH 111 4 HOH HOH 1112 A HOH 112 4 HOH HOH 1113 A HOH 113 4 HOH HOH 1114 A HOH 114 4 HOH HOH 1115 A HOH 115 4 HOH HOH 1116 A HOH 116 4 HOH HOH 1117 A HOH 117 4 HOH HOH 1118 A HOH 118 4 HOH HOH 1119 A HOH 119 4 HOH HOH 1120 A HOH 120 4 HOH HOH 1121 A HOH 121 4 HOH HOH 1122 A HOH 122 4 HOH HOH 1123 A HOH 123 4 HOH HOH 1124 A HOH 124 4 HOH HOH 1125 A HOH 125 4 HOH HOH 1126 A HOH 126 4 HOH HOH 1127 A HOH 127 4 HOH HOH 1128 A HOH 128 4 HOH HOH 1129 A HOH 129 4 HOH HOH 1130 A HOH 130 4 HOH HOH 1131 A HOH 131 4 HOH HOH 1132 A HOH 132 4 HOH HOH 1133 A HOH 133 4 HOH HOH 1134 A HOH 134 4 HOH HOH 1135 A HOH 135 4 HOH HOH 1136 A HOH 136 4 HOH HOH 1137 A HOH 137 4 HOH HOH 1138 A HOH 138 4 HOH HOH 1139 A HOH 139 4 HOH HOH 1140 A HOH 140 4 HOH HOH 1141 A HOH 141 4 HOH HOH 1142 A HOH 142 4 HOH HOH 1143 A HOH 143 4 HOH HOH 1144 A HOH 144 4 HOH HOH 1145 A HOH 145 4 HOH HOH 1146 A HOH 146 4 HOH HOH 1147 A HOH 147 4 HOH HOH 1148 A HOH 148 4 HOH HOH 1149 A HOH 149 4 HOH HOH 1150 A HOH 150 4 HOH HOH 1151 A HOH 151 4 HOH HOH 1152 A HOH 152 4 HOH HOH 1153 A HOH 153 4 HOH HOH 1154 A HOH 154 4 HOH HOH 1155 A HOH 155 4 HOH HOH 1156 A HOH 156 4 HOH HOH 1157 A HOH 157 4 HOH HOH 1158 A HOH 158 4 HOH HOH 1159 A HOH 159 4 HOH HOH 1160 A HOH 160 4 HOH HOH 1161 A HOH 161 4 HOH HOH 1162 A HOH 162 4 HOH HOH 1163 A HOH 163 4 HOH HOH 1164 A HOH 164 4 HOH HOH 1165 A HOH 165 4 HOH HOH 1166 A HOH 166 4 HOH HOH 1167 A HOH 167 4 HOH HOH 1168 A HOH 168 4 HOH HOH 1169 A HOH 169 4 HOH HOH 1170 A HOH 170 4 HOH HOH 1171 A ILE 1 n 1 ILE 1 A ILE 2 n 2 ILE 2 A GLY 3 n 3 GLY 3 A GLY 4 n 4 GLY 4 A GLU 5 n 5 GLU 5 A PHE 6 n 6 PHE 6 A THR 7 n 7 THR 7 A THR 8 n 8 THR 8 A ILE 9 n 9 ILE 9 A GLU 10 n 10 GLU 10 A ASN 11 n 11 ASN 11 A GLN 12 n 12 GLN 12 A PRO 13 n 13 PRO 13 A TRP 14 n 14 TRP 14 A PHE 15 n 15 PHE 15 A ALA 16 n 16 ALA 16 A ALA 17 n 17 ALA 17 A ILE 18 n 18 ILE 18 A TYR 19 n 19 TYR 19 A ARG 20 n 20 ARG 20 A ARG 21 n 21 ARG 21 A HIS 22 n 22 HIS 22 A ARG 23 n 23 ARG 23 A GLY 25 n 24 GLY 25 A GLY 27 n 25 GLY 27 A SER 28 n 26 SER 28 A VAL 29 n 27 VAL 29 A THR 30 n 28 THR 30 A TYR 31 n 29 TYR 31 A VAL 32 n 30 VAL 32 A CYS 34 n 31 CYS 34 A GLY 36 n 32 GLY 36 A GLY 37 n 33 GLY 37 A SER 38 n 34 SER 38 A LEU 39 n 35 LEU 39 A MET 41 n 36 MET 41 A SER 43 n 37 SER 43 A PRO 44 n 38 PRO 44 A CYS 46 n 39 CYS 46 A TRP 48 n 40 TRP 48 A VAL 49 n 41 VAL 49 A ILE 50 n 42 ILE 50 A SER 51 n 43 SER 51 A ALA 52 n 44 ALA 52 A THR 53 n 45 THR 53 A HIS 54 n 46 HIS 54 A CYS 55 n 47 CYS 55 A PHE 56 n 48 PHE 56 A ILE 57 n 49 ILE 57 A ASP 58 n 50 ASP 58 A TYR 59 n 51 TYR 59 A PRO 60 n 52 PRO 60 A LYS 61 n 53 LYS 61 A LYS 62 n 54 LYS 62 A GLU 63 n 55 GLU 63 A ASP 65 n 56 ASP 65 A TYR 67 n 57 TYR 67 A ILE 68 n 58 ILE 68 A VAL 69 n 59 VAL 69 A TYR 70 n 60 TYR 70 A LEU 71 n 61 LEU 71 A GLY 72 n 62 GLY 72 A ARG 73 n 63 ARG 73 A SER 74 n 64 SER 74 A ARG 76 n 65 ARG 76 A LEU 78 n 66 LEU 78 A ASN 79 n 67 ASN 79 A SER 80 n 68 SER 80 A ASN 81 n 69 ASN 81 A THR 82 n 70 THR 82 A GLN 83 n 71 GLN 83 A GLY 84 n 72 GLY 84 A GLU 85 n 73 GLU 85 A MET 86 n 74 MET 86 A LYS 87 n 75 LYS 87 A PHE 88 n 76 PHE 88 A GLU 89 n 77 GLU 89 A VAL 90 n 78 VAL 90 A GLU 91 n 79 GLU 91 A ASN 92 n 80 ASN 92 A LEU 93 n 81 LEU 93 A ILE 94 n 82 ILE 94 A LEU 95 n 83 LEU 95 A HIS 96 n 84 HIS 96 A LYS 97 n 85 LYS 97 A ASP 98 n 86 ASP 98 A TYR 99 n 87 TYR 99 A SER 100 n 88 SER 100 A ALA 101 n 89 ALA 101 A ASP 102 n 90 ASP 102 A THR 103 n 91 THR 103 A LEU 104 n 92 LEU 104 A ALA 105 n 93 ALA 105 A HIS 106 n 94 HIS 106 A HIS 107 n 95 HIS 107 A ASN 108 n 96 ASN 108 A ASP 109 n 97 ASP 109 A ILE 110 n 98 ILE 110 A ALA 111 n 99 ALA 111 A LEU 112 n 100 LEU 112 A LEU 113 n 101 LEU 113 A LYS 114 n 102 LYS 114 A ILE 115 n 103 ILE 115 A ARG 116 n 104 ARG 116 A SER 117 n 105 SER 117 A LYS 118 n 106 LYS 118 A GLU 119 n 107 GLU 119 A GLY 120 n 108 GLY 120 A ARG 121 n 109 ARG 121 A CYS 122 n 110 CYS 122 A ALA 123 n 111 ALA 123 A GLN 124 n 112 GLN 124 A PRO 125 n 113 PRO 125 A SER 126 n 114 SER 126 A ARG 127 n 115 ARG 127 A THR 128 n 116 THR 128 A ILE 129 n 117 ILE 129 A GLN 130 n 118 GLN 130 A THR 131 n 119 THR 131 A ILE 132 n 120 ILE 132 A ALA 133 n 121 CYS 133 A LEU 134 n 122 LEU 134 A PRO 135 n 123 PRO 135 A SER 136 n 124 SER 136 A MET 137 n 125 MET 137 A TYR 138 n 126 TYR 138 A ASN 139 n 127 ASN 139 A ASP 140 n 128 ASP 140 A PRO 141 n 129 PRO 141 A GLN 142 n 130 GLN 142 A PHE 143 n 131 PHE 143 A GLY 144 n 132 GLY 144 A THR 145 n 133 THR 145 A SER 146 n 134 SER 146 A CYS 147 n 135 CYS 147 A GLU 148 n 136 GLU 148 A ILE 149 n 137 ILE 149 A THR 150 n 138 THR 150 A GLY 151 n 139 GLY 151 A PHE 152 n 140 PHE 152 A GLY 153 n 141 GLY 153 A LYS 154 n 142 LYS 154 A GLU 155 n 143 GLU 155 A GLN 156 n 144 GLN 156 A SER 157 n 145 SER 157 A THR 158 n 146 THR 158 A ASP 159 n 147 ASP 159 A TYR 160 n 148 TYR 160 A LEU 161 n 149 LEU 161 A TYR 162 n 150 TYR 162 A PRO 163 n 151 PRO 163 A GLU 164 n 152 GLU 164 A GLN 165 n 153 GLN 165 A LEU 167 n 154 LEU 167 A LYS 168 n 155 LYS 168 A MET 169 n 156 MET 169 A THR 170 n 157 THR 170 A VAL 171 n 158 VAL 171 A VAL 172 n 159 VAL 172 A LYS 173 n 160 LYS 173 A LEU 174 n 161 LEU 174 A ILE 175 n 162 ILE 175 A SER 176 n 163 SER 176 A HIS 177 n 164 HIS 177 A ARG 178 n 165 ARG 178 A GLU 179 n 166 GLU 179 A CYS 180 n 167 CYS 180 A GLN 181 n 168 GLN 181 A GLN 182 n 169 GLN 182 A PRO 183 n 170 PRO 183 A HIS 184 n 171 HIS 184 A TYR 185 n 172 TYR 185 A TYR 186 n 173 TYR 186 A GLY 187 n 174 GLY 187 A SER 188 n 175 SER 188 A GLU 189 n 176 GLU 189 A VAL 190 n 177 VAL 190 A THR 191 n 178 THR 191 A THR 192 n 179 THR 192 A LYS 193 n 180 LYS 193 A MET 194 n 181 MET 194 A LEU 195 n 182 LEU 195 A CYS 196 n 183 CYS 196 A ALA 197 n 184 ALA 197 A ALA 198 n 185 ALA 198 A ASP 199 n 186 ASP 199 A PRO 200 n 187 PRO 200 A GLN 201 n 188 GLN 201 A TRP 202 n 189 TRP 202 A LYS 203 n 190 LYS 203 A THR 204 n 191 THR 204 A ASP 205 n 192 ASP 205 A SER 206 n 193 SER 206 A CYS 207 n 194 CYS 207 A GLN 208 n 195 GLN 208 A GLY 209 n 196 GLY 209 A ASP 210 n 197 ASP 210 A SER 211 n 198 SER 211 A GLY 212 n 199 GLY 212 A GLY 213 n 200 GLY 213 A PRO 214 n 201 PRO 214 A LEU 215 n 202 LEU 215 A VAL 216 n 203 VAL 216 A CYS 217 n 204 CYS 217 A SER 218 n 205 SER 218 A LEU 219 n 206 LEU 219 A GLN 220 n 207 GLN 220 A GLY 221 n 208 GLY 221 A ARG 222 n 209 ARG 222 A MET 223 n 210 MET 223 A THR 224 n 211 THR 224 A LEU 225 n 212 LEU 225 A THR 226 n 213 THR 226 A GLY 227 n 214 GLY 227 A ILE 228 n 215 ILE 228 A VAL 229 n 216 VAL 229 A SER 230 n 217 SER 230 A TRP 231 n 218 TRP 231 A GLY 232 n 219 GLY 232 A ARG 233 n 220 ARG 233 A GLY 234 n 221 GLY 234 A CYS 235 n 222 CYS 235 A ALA 236 n 223 ALA 236 A LEU 237 n 224 LEU 237 A LYS 238 n 225 LYS 238 A ASP 239 n 226 ASP 239 A LYS 240 n 227 LYS 240 A PRO 241 n 228 PRO 241 A GLY 242 n 229 GLY 242 A VAL 243 n 230 VAL 243 A TYR 244 n 231 TYR 244 A THR 245 n 232 THR 245 A ARG 246 n 233 ARG 246 A VAL 247 n 234 VAL 247 A SER 248 n 235 SER 248 A HIS 249 n 236 HIS 249 A PHE 250 n 237 PHE 250 A LEU 251 n 238 LEU 251 A PRO 252 n 239 PRO 252 A TRP 253 n 240 TRP 253 A ILE 254 n 241 ILE 254 A ARG 255 n 242 ARG 255 A SER 256 n 243 SER 256 A HIS 257 n 244 HIS 257 A THR 258 n 245 THR 258 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 5 A N GLU 5 A O MET 169 A O MET 156 A O VAL 172 A O VAL 159 A N CYS 147 A N CYS 135 A N THR 150 A N THR 138 A O PRO 214 A O PRO 201 A N LEU 219 A N LEU 206 A O ARG 222 A O ARG 209 A O TRP 231 A O TRP 218 A N VAL 243 A N VAL 230 A O TYR 244 A O TYR 231 A N LEU 195 A N LEU 182 A O ALA 198 A O ALA 185 A N LYS 173 A N LYS 160 A N ARG 20 A N ARG 20 A O THR 30 A O THR 28 A N MET 41 A N MET 36 A O TRP 48 A O TRP 40 A N SER 51 A N SER 43 A O ALA 111 A O ALA 99 A O ARG 116 A O ARG 104 A N GLU 89 A N GLU 77 A N PHE 88 A N PHE 76 A O VAL 69 A O VAL 59 A N TYR 70 A N TYR 60 A O ALA 17 A O ALA 17 A O SER 100 A O SER 88 A N HIS 107 A N HIS 95 1 A SG CYS 133 A SG CYS 121 1 Y 1 A ARG 73 0.102 SIDE CHAIN 1 3.37 0.50 120.30 123.67 A A A NE CZ NH1 ARG ARG ARG 21 21 21 N 1 -5.10 0.50 120.30 115.20 A A A NE CZ NH2 ARG ARG ARG 21 21 21 N 1 11.54 1.10 114.20 125.74 A A A CA CB SG CYS CYS CYS 46 46 46 N 1 10.87 1.40 123.60 134.47 A A A CD NE CZ ARG ARG ARG 73 73 73 N 1 12.72 0.50 120.30 133.02 A A A NE CZ NH1 ARG ARG ARG 73 73 73 N 1 -12.76 0.50 120.30 107.54 A A A NE CZ NH2 ARG ARG ARG 73 73 73 N 1 6.39 0.50 120.30 126.69 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 -7.41 0.50 120.30 112.89 A A A NE CZ NH2 ARG ARG ARG 76 76 76 N 1 16.01 2.60 111.60 127.61 A A A CB CG CD GLN GLN GLN 83 83 83 N 1 -4.56 0.50 120.30 115.74 A A A NE CZ NH1 ARG ARG ARG 116 116 116 N 1 4.81 0.50 120.30 125.11 A A A NE CZ NH1 ARG ARG ARG 121 121 121 N 1 3.02 0.50 120.30 123.32 A A A NE CZ NH1 ARG ARG ARG 127 127 127 N 1 -9.61 1.60 110.90 101.29 A A A CG1 CB CG2 VAL VAL VAL 171 171 171 N 1 -4.05 0.50 120.30 116.25 A A A NE CZ NH2 ARG ARG ARG 178 178 178 N 1 8.28 0.90 118.30 126.58 A A A CB CG OD1 ASP ASP ASP 205 205 205 N 1 17.03 2.60 111.60 128.63 A A A CB CG CD GLN GLN GLN 220 220 220 N 1 4.94 0.50 120.30 125.24 A A A NE CZ NH1 ARG ARG ARG 222 222 222 N 1 -4.60 0.50 120.30 115.70 A A A NE CZ NH2 ARG ARG ARG 222 222 222 N 1 3.31 0.50 120.30 123.61 A A A NE CZ NH1 ARG ARG ARG 246 246 246 N 1 A A CB CG MET MET 41 41 -0.251 0.032 1.509 1.258 N 1 A A CB OG SER SER 188 188 0.078 0.013 1.418 1.496 N 1 A VAL 32 -109.39 -65.04 1 A SER 51 -153.87 -154.12 1 A PRO 60 -84.66 35.00 1 A LEU 104 -121.80 -52.41 1 A TYR 185 -91.07 -108.07 1 A SER 230 -126.77 -60.59 PARAM11.WAT TOPHCSDX.PRO PARVICKI.PRO PARAM19X.PRO PARHCSDX.PRO 207239.XPRM 10.5 0.00 0.00 0.00 0.00 0.00 0.00 0.265 0.005 0.211 0.211 0.211 1.61 10.00 2450 24085 24085 10.2 74.4 RANDOM 10000000.00 0.001000 1 RESTRAINED THROUGHOUT 2.0 FOURIER SYNTHESIS Engh & Huber 0.22 0.16 5.00 0.05 -0.02 1.61 10.00 170 2143 39 0 1934 0.028 3.5 26.0 1.89 1.23 1.50 1.68 2.00 2.81 2.00 4.21 2.50 0.347 0.028 0.314 1.70 156 1463 6 9.6 30.5 12.0 1.61 20.57 1OWH 30336 30336 0 1 refinement X-PLOR 98.0 data scaling SCALEPACK phasing X-PLOR Urokinase-type plasminogen activator (E.C.3.4.21.73) Substituted 2-Naphthamidine Inhibitors of Urokinase 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N A THR 8 A THR 8 HELX_P A GLN 12 A GLN 12 5 1 5 A ALA 52 A ALA 44 HELX_P A PHE 56 A PHE 48 5 2 5 A LYS 61 A LYS 53 HELX_P A GLU 63 A GLU 55 5 3 3 A SER 176 A SER 163 HELX_P A GLN 181 A GLN 168 1 4 6 A TYR 186 A TYR 173 HELX_P A VAL 190 A VAL 177 5 5 5 A PHE 250 A PHE 237 HELX_P A THR 258 A THR 245 1 6 9 disulf 2.187 A CYS 34 A SG CYS 31 1_555 A CYS 55 A SG CYS 47 1_555 disulf 2.192 A CYS 147 A SG CYS 135 1_555 A CYS 217 A SG CYS 204 1_555 disulf 2.139 A CYS 180 A SG CYS 167 1_555 A CYS 196 A SG CYS 183 1_555 disulf 2.247 A CYS 207 A SG CYS 194 1_555 A CYS 235 A SG CYS 222 1_555 HYDROLASE Plasminogen activation, Hydrolase, Serine protease, Glycoprotein, Kringle, EGF-like domain UROK_HUMAN UNP 1 179 P00749 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT 179 423 1OWH 1 245 P00749 A 1 1 232 1 ASN CONFLICT GLN 156 1OWH A P00749 UNP 322 144 8 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 5 A GLU 5 A PHE 6 A PHE 6 A LYS 168 A LYS 155 A ILE 175 A ILE 162 A SER 146 A SER 134 A GLY 151 A GLY 139 A PRO 214 A PRO 201 A LEU 219 A LEU 206 A ARG 222 A ARG 209 A TRP 231 A TRP 218 A GLY 242 A GLY 229 A ARG 246 A ARG 233 A MET 194 A MET 181 A ALA 198 A ALA 185 A LYS 168 A LYS 155 A ILE 175 A ILE 162 A PHE 15 A PHE 15 A ARG 21 A ARG 21 A VAL 29 A VAL 27 A SER 43 A SER 37 A TRP 48 A TRP 40 A SER 51 A SER 43 A ALA 111 A ALA 99 A ARG 116 A ARG 104 A MET 86 A MET 74 A LEU 95 A LEU 83 A TYR 67 A TYR 57 A LEU 71 A LEU 61 A PHE 15 A PHE 15 A ARG 21 A ARG 21 A SER 100 A SER 88 A ALA 101 A ALA 89 A HIS 106 A HIS 94 A HIS 107 A HIS 95 BINDING SITE FOR RESIDUE SO4 A 301 Software 6 BINDING SITE FOR RESIDUE SO4 A 302 Software 8 BINDING SITE FOR RESIDUE SO4 A 303 Software 3 BINDING SITE FOR RESIDUE 239 A 1001 Software 11 A LYS 61 A LYS 53 6 1_555 A HIS 107 A HIS 95 6 3_645 A THR 191 A THR 178 6 3_645 A LYS 193 A LYS 180 6 3_645 A MET 194 A MET 181 6 3_645 A HOH 1062 F HOH 6 1_555 A VAL 32 A VAL 30 8 1_555 A CYS 34 A CYS 31 8 1_555 A HIS 54 A HIS 46 8 1_555 A GLN 208 A GLN 195 8 1_555 A GLY 209 A GLY 196 8 1_555 A SER 211 A SER 198 8 1_555 A 239 1001 E 239 8 1_555 A HOH 1052 F HOH 8 1_555 A ARG 246 A ARG 233 3 1_555 A HIS 249 A HIS 236 3 1_555 A HOH 1093 F HOH 3 1_555 A HIS 54 A HIS 46 11 1_555 A ASP 58 A ASP 50 11 1_555 A HIS 106 A HIS 94 11 1_555 A ASP 205 A ASP 192 11 1_555 A SER 206 A SER 193 11 1_555 A GLN 208 A GLN 195 11 1_555 A SER 211 A SER 198 11 1_555 A GLY 234 A GLY 221 11 1_555 A GLY 242 A GLY 229 11 1_555 A SO4 302 C SO4 11 1_555 A HOH 1020 F HOH 11 1_555 19 P 21 21 21