0.006521
0.000000
0.000713
0.000000
0.010402
0.000000
0.000000
0.000000
0.017518
0.00000
0.00000
0.00000
Liu, J.
Wang, W.
Shin, D.H.
Yokota, H.
Kim, R.
Kim, S.H.
Berkeley Structural Genomics Center (BSGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
96.24
90.00
153.351
96.139
57.426
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
53
326
328
10.1002/prot.10479
14517984
Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold.
2003
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-05-23
ADSC QUANTUM 4
YALE MIRRORS
MAD
M
x-ray
1
0.9640
1.0
0.9793
1.0
5.0.2
ALS
0.9640,0.9793
SYNCHROTRON
ALS BEAMLINE 5.0.2
29693.562
tRNA (Guanine-N(1)-)-methyltransferase
2.1.1.31
3
man
polymer
18.015
water
76
nat
water
M1G-methyltransferase, tRNA [GM37] methyltransferase
no
no
MSSNPLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN
YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSRVLPGV
LSEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTELEKDILNSI
LSGKSFKEWLKEHKHLL
MSSNPLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN
YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSRVLPGV
LSEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTELEKDILNSI
LSGKSFKEWLKEHKHLL
A,B,C
BSGCAIR30419
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aquifex
Escherichia
sample
TRMD OR AQ_1489
63363
Aquifex aeolicus
562
Escherichia coli
BL21(DE3)/pSJ1244
1
2.36
47.89
VAPOR DIFFUSION, HANGING DROP
5.5
100 mM Sodium Citrate, 20 % PEG3000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
278
Berkeley Structural Genomics Center
BSGC
PSI, Protein Structure Initiative
repository
Initial release
Version format compliance
Advisory
Version format compliance
1
0
2003-11-11
1
1
2008-04-29
1
2
2011-07-13
BIOMOLECULE:
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 3 CHAIN(S). THE AUTHORS STATE THAT
THE BIOLOGICAL UNIT IS NOT CLEAR.
COMPOUND
THE AUTHORS STATE THE FOLLOWING:
BASED ON THE PROTEIN SEQUENCE, THIS PROTEIN, AQ_TRMD,
IS ANNOTATED AS A TRNA (M1G37) METHYLTRANSFERASE, SAME AS
ANOTHER TRNA (M1G37) METHYLTRANSFERASE OF KNOWN STRUCTURE
(SUCH AS 1UAJ, 1UAK, 1UAL, 1UAM). THE MAJOR DIFFERENCE IS
THAT THE LATTER STRUCTURES HAVE "TRIFOIL KNOTS", WHICH IS
PROPOSED AS ESSENTIAL FOR S-ADENOSYL-L-METHIONINE BINDING,
WHILE THIS STRUCTURE DOES NOT HAVE THE KNOT. THEREFORE,
IT IS POSSIBLE THAT THE PROTEIN IN THIS ENTRY MAY HAVE A
BIOCHEMICAL FUNCTION DIFFERENT FROM TRNA (1MG37)
METHYLTRANSFERASE DESPITE THE SEQUENCE-BASED ANNOTATION
AS SUCH.
Y
RCSB
Y
RCSB
2003-04-03
REL
REL
HOH
water
HOH
1
2
HOH
HOH
258
A
HOH
9
2
HOH
HOH
259
A
HOH
10
2
HOH
HOH
260
A
HOH
11
2
HOH
HOH
261
A
HOH
12
2
HOH
HOH
262
A
HOH
13
2
HOH
HOH
263
A
HOH
15
2
HOH
HOH
264
A
HOH
17
2
HOH
HOH
265
A
HOH
18
2
HOH
HOH
266
A
HOH
20
2
HOH
HOH
267
A
HOH
26
2
HOH
HOH
268
A
HOH
27
2
HOH
HOH
269
A
HOH
29
2
HOH
HOH
270
A
HOH
30
2
HOH
HOH
271
A
HOH
52
2
HOH
HOH
272
A
HOH
53
2
HOH
HOH
273
A
HOH
54
2
HOH
HOH
274
A
HOH
55
2
HOH
HOH
275
A
HOH
57
2
HOH
HOH
276
A
HOH
58
2
HOH
HOH
277
A
HOH
60
2
HOH
HOH
278
A
HOH
64
2
HOH
HOH
279
A
HOH
70
2
HOH
HOH
280
A
HOH
2
2
HOH
HOH
2
B
HOH
3
2
HOH
HOH
3
B
HOH
4
2
HOH
HOH
4
B
HOH
7
2
HOH
HOH
7
B
HOH
21
2
HOH
HOH
21
B
HOH
22
2
HOH
HOH
22
B
HOH
23
2
HOH
HOH
23
B
HOH
24
2
HOH
HOH
24
B
HOH
25
2
HOH
HOH
25
B
HOH
31
2
HOH
HOH
31
B
HOH
47
2
HOH
HOH
47
B
HOH
48
2
HOH
HOH
48
B
HOH
49
2
HOH
HOH
49
B
HOH
50
2
HOH
HOH
50
B
HOH
61
2
HOH
HOH
61
B
HOH
62
2
HOH
HOH
62
B
HOH
65
2
HOH
HOH
65
B
HOH
66
2
HOH
HOH
66
B
HOH
67
2
HOH
HOH
67
B
HOH
68
2
HOH
HOH
68
B
HOH
78
2
HOH
HOH
78
B
HOH
5
2
HOH
HOH
5
C
HOH
6
2
HOH
HOH
6
C
HOH
8
2
HOH
HOH
8
C
HOH
14
2
HOH
HOH
14
C
HOH
32
2
HOH
HOH
32
C
HOH
33
2
HOH
HOH
33
C
HOH
34
2
HOH
HOH
34
C
HOH
35
2
HOH
HOH
35
C
HOH
36
2
HOH
HOH
36
C
HOH
37
2
HOH
HOH
37
C
HOH
38
2
HOH
HOH
38
C
HOH
39
2
HOH
HOH
39
C
HOH
40
2
HOH
HOH
40
C
HOH
41
2
HOH
HOH
41
C
HOH
42
2
HOH
HOH
42
C
HOH
43
2
HOH
HOH
43
C
HOH
44
2
HOH
HOH
44
C
HOH
45
2
HOH
HOH
45
C
HOH
46
2
HOH
HOH
46
C
HOH
51
2
HOH
HOH
51
C
HOH
56
2
HOH
HOH
56
C
HOH
59
2
HOH
HOH
59
C
HOH
69
2
HOH
HOH
69
C
HOH
71
2
HOH
HOH
71
C
HOH
72
2
HOH
HOH
72
C
HOH
74
2
HOH
HOH
74
C
HOH
75
2
HOH
HOH
75
C
HOH
76
2
HOH
HOH
76
C
HOH
77
2
HOH
HOH
77
C
HOH
79
2
HOH
HOH
79
C
HOH
80
2
HOH
HOH
80
C
HOH
81
2
HOH
HOH
81
C
n
1
1
A
n
2
2
A
n
3
3
A
ASN
4
n
4
ASN
4
A
PRO
5
n
5
PRO
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
PHE
8
n
8
PHE
8
A
PHE
9
n
9
PHE
9
A
VAL
10
n
10
VAL
10
A
LEU
11
n
11
LEU
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
PHE
14
n
14
PHE
14
A
PRO
15
n
15
PRO
15
A
HIS
16
n
16
HIS
16
A
ILE
17
n
17
ILE
17
A
ILE
18
n
18
ILE
18
A
SER
19
n
19
SER
19
A
CYS
20
n
20
CYS
20
A
TYR
21
n
21
TYR
21
A
SER
22
n
22
SER
22
A
GLU
23
n
23
GLU
23
A
TYR
24
n
24
TYR
24
A
GLY
25
n
25
GLY
25
A
ILE
26
n
26
ILE
26
A
VAL
27
n
27
VAL
27
A
LYS
28
n
28
LYS
28
A
GLN
29
n
29
GLN
29
A
ALA
30
n
30
ALA
30
A
ILE
31
n
31
ILE
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
LYS
35
n
35
LYS
35
A
VAL
36
n
36
VAL
36
A
GLU
37
n
37
GLU
37
A
VAL
38
n
38
VAL
38
A
TYR
39
n
39
TYR
39
A
PRO
40
n
40
PRO
40
A
ILE
41
n
41
ILE
41
A
ASP
42
n
42
ASP
42
A
LEU
43
n
43
LEU
43
A
ARG
44
n
44
ARG
44
A
GLU
45
n
45
GLU
45
A
PHE
46
n
46
PHE
46
A
ALA
47
n
47
ALA
47
A
PRO
48
n
48
PRO
48
A
LYS
49
n
49
LYS
49
A
GLY
50
n
50
GLY
50
A
GLN
51
n
51
GLN
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
ASP
54
n
54
ASP
54
A
VAL
55
n
55
VAL
55
A
PRO
56
n
56
PRO
56
A
TYR
57
n
57
TYR
57
A
GLY
58
n
58
GLY
58
A
GLY
59
n
59
GLY
59
A
LEU
60
n
60
LEU
60
A
PRO
61
n
61
PRO
61
A
GLY
62
n
62
GLY
62
A
MET
63
n
63
MET
63
A
VAL
64
n
64
VAL
64
A
LEU
65
n
65
LEU
65
A
LYS
66
n
66
LYS
66
A
PRO
67
n
67
PRO
67
A
GLU
68
n
68
GLU
68
A
PRO
69
n
69
PRO
69
A
ILE
70
n
70
ILE
70
A
TYR
71
n
71
TYR
71
A
GLU
72
n
72
GLU
72
A
ALA
73
n
73
ALA
73
A
TYR
74
n
74
TYR
74
A
ASP
75
n
75
ASP
75
A
TYR
76
n
76
TYR
76
A
VAL
77
n
77
VAL
77
A
VAL
78
n
78
VAL
78
A
GLU
79
n
79
GLU
79
A
ASN
80
n
80
ASN
80
A
TYR
81
n
81
TYR
81
A
GLY
82
n
82
GLY
82
A
LYS
83
n
83
LYS
83
A
PRO
84
n
84
PRO
84
A
PHE
85
n
85
PHE
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
GLU
90
n
90
GLU
90
A
PRO
91
n
91
PRO
91
A
TRP
92
n
92
TRP
92
A
GLY
93
n
93
GLY
93
A
GLU
94
n
94
GLU
94
A
LYS
95
n
95
LYS
95
A
LEU
96
n
96
LEU
96
A
ASN
97
n
97
ASN
97
A
GLN
98
n
98
GLN
98
A
LYS
99
n
99
LYS
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
ASN
102
n
102
ASN
102
A
GLU
103
n
103
GLU
103
A
LEU
104
n
104
LEU
104
A
SER
105
n
105
SER
105
A
LYS
106
n
106
LYS
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
ARG
109
n
109
ARG
109
A
ILE
110
n
110
ILE
110
A
MET
111
n
111
MET
111
A
ILE
112
n
112
ILE
112
A
ILE
113
n
113
ILE
113
A
CYS
114
n
114
CYS
114
A
GLY
115
n
115
GLY
115
A
ARG
116
n
116
ARG
116
A
TYR
117
n
117
TYR
117
A
GLU
118
n
118
GLU
118
A
GLY
119
n
119
GLY
119
A
VAL
120
n
120
VAL
120
A
ASP
121
n
121
ASP
121
A
GLU
122
n
122
GLU
122
A
ARG
123
n
123
ARG
123
A
VAL
124
n
124
VAL
124
A
LYS
125
n
125
LYS
125
A
LYS
126
n
126
LYS
126
A
ILE
127
n
127
ILE
127
A
VAL
128
n
128
VAL
128
A
ASP
129
n
129
ASP
129
A
MET
130
n
130
MET
130
A
GLU
131
n
131
GLU
131
A
ILE
132
n
132
ILE
132
A
SER
133
n
133
SER
133
A
LEU
134
n
134
LEU
134
A
GLY
135
n
135
GLY
135
A
ASP
136
n
136
ASP
136
A
PHE
137
n
137
PHE
137
A
ILE
138
n
138
ILE
138
A
LEU
139
n
139
LEU
139
A
SER
140
n
140
SER
140
A
GLY
141
n
141
GLY
141
A
GLY
142
n
142
GLY
142
A
GLU
143
n
143
GLU
143
A
ILE
144
n
144
ILE
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
LEU
147
n
147
LEU
147
A
ALA
148
n
148
ALA
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
ASP
151
n
151
ASP
151
A
ALA
152
n
152
ALA
152
A
VAL
153
n
153
VAL
153
A
SER
154
n
154
SER
154
A
ARG
155
n
155
ARG
155
A
VAL
156
n
156
VAL
156
A
LEU
157
n
157
LEU
157
A
PRO
158
n
158
PRO
158
A
GLY
159
n
159
GLY
159
A
VAL
160
n
160
VAL
160
A
LEU
161
n
161
LEU
161
A
SER
162
n
162
SER
162
A
GLU
163
n
163
GLU
163
A
PRO
164
n
164
PRO
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
n
176
176
A
n
177
177
A
n
178
178
A
TYR
179
n
179
TYR
179
A
PRO
180
n
180
PRO
180
A
VAL
181
n
181
VAL
181
A
TYR
182
n
182
TYR
182
A
THR
183
n
183
THR
183
A
ARG
184
n
184
ARG
184
A
PRO
185
n
185
PRO
185
A
ARG
186
n
186
ARG
186
A
GLU
187
n
187
GLU
187
A
TYR
188
n
188
TYR
188
A
ARG
189
n
189
ARG
189
A
GLY
190
n
190
GLY
190
A
MET
191
n
191
MET
191
A
LYS
192
n
192
LYS
192
A
VAL
193
n
193
VAL
193
A
PRO
194
n
194
PRO
194
A
GLU
195
n
195
GLU
195
A
GLU
196
n
196
GLU
196
A
LEU
197
n
197
LEU
197
A
LEU
198
n
198
LEU
198
A
SER
199
n
199
SER
199
A
GLY
200
n
200
GLY
200
A
HIS
201
n
201
HIS
201
A
HIS
202
n
202
HIS
202
A
LYS
203
n
203
LYS
203
A
LEU
204
n
204
LEU
204
A
ILE
205
n
205
ILE
205
A
GLU
206
n
206
GLU
206
A
LEU
207
n
207
LEU
207
A
TRP
208
n
208
TRP
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
TRP
211
n
211
TRP
211
A
HIS
212
n
212
HIS
212
A
ARG
213
n
213
ARG
213
A
ILE
214
n
214
ILE
214
A
GLU
215
n
215
GLU
215
A
ASN
216
n
216
ASN
216
A
THR
217
n
217
THR
217
A
VAL
218
n
218
VAL
218
A
LYS
219
n
219
LYS
219
A
LYS
220
n
220
LYS
220
A
ARG
221
n
221
ARG
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
LEU
224
n
224
LEU
224
A
ILE
225
n
225
ILE
225
A
PRO
226
n
226
PRO
226
A
LYS
227
n
227
LYS
227
A
ASP
228
n
228
ASP
228
A
LEU
229
n
229
LEU
229
A
THR
230
n
230
THR
230
A
GLU
231
n
231
GLU
231
A
LEU
232
n
232
LEU
232
A
GLU
233
n
233
GLU
233
A
LYS
234
n
234
LYS
234
A
ASP
235
n
235
ASP
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
241
241
A
n
242
242
A
n
243
243
A
n
244
244
A
n
245
245
A
n
246
246
A
n
247
247
A
n
248
248
A
n
249
249
A
n
250
250
A
n
251
251
A
n
252
252
A
n
253
253
A
n
254
254
A
n
255
255
A
n
256
256
A
n
257
257
A
n
1
301
B
n
2
302
B
n
3
303
B
ASN
304
n
4
ASN
304
B
PRO
305
n
5
PRO
305
B
LEU
306
n
6
LEU
306
B
ARG
307
n
7
ARG
307
B
PHE
308
n
8
PHE
308
B
PHE
309
n
9
PHE
309
B
VAL
310
n
10
VAL
310
B
LEU
311
n
11
LEU
311
B
THR
312
n
12
THR
312
B
ILE
313
n
13
ILE
313
B
PHE
314
n
14
PHE
314
B
PRO
315
n
15
PRO
315
B
HIS
316
n
16
HIS
316
B
ILE
317
n
17
ILE
317
B
ILE
318
n
18
ILE
318
B
SER
319
n
19
SER
319
B
CYS
320
n
20
CYS
320
B
TYR
321
n
21
TYR
321
B
SER
322
n
22
SER
322
B
GLU
323
n
23
GLU
323
B
TYR
324
n
24
TYR
324
B
GLY
325
n
25
GLY
325
B
ILE
326
n
26
ILE
326
B
VAL
327
n
27
VAL
327
B
LYS
328
n
28
LYS
328
B
GLN
329
n
29
GLN
329
B
ALA
330
n
30
ALA
330
B
ILE
331
n
31
ILE
331
B
LYS
332
n
32
LYS
332
B
LYS
333
n
33
LYS
333
B
GLY
334
n
34
GLY
334
B
LYS
335
n
35
LYS
335
B
VAL
336
n
36
VAL
336
B
GLU
337
n
37
GLU
337
B
VAL
338
n
38
VAL
338
B
TYR
339
n
39
TYR
339
B
PRO
340
n
40
PRO
340
B
ILE
341
n
41
ILE
341
B
ASP
342
n
42
ASP
342
B
LEU
343
n
43
LEU
343
B
ARG
344
n
44
ARG
344
B
GLU
345
n
45
GLU
345
B
PHE
346
n
46
PHE
346
B
ALA
347
n
47
ALA
347
B
PRO
348
n
48
PRO
348
B
LYS
349
n
49
LYS
349
B
GLY
350
n
50
GLY
350
B
GLN
351
n
51
GLN
351
B
VAL
352
n
52
VAL
352
B
ASP
353
n
53
ASP
353
B
ASP
354
n
54
ASP
354
B
VAL
355
n
55
VAL
355
B
PRO
356
n
56
PRO
356
B
TYR
357
n
57
TYR
357
B
GLY
358
n
58
GLY
358
B
GLY
359
n
59
GLY
359
B
LEU
360
n
60
LEU
360
B
PRO
361
n
61
PRO
361
B
GLY
362
n
62
GLY
362
B
MET
363
n
63
MET
363
B
VAL
364
n
64
VAL
364
B
LEU
365
n
65
LEU
365
B
LYS
366
n
66
LYS
366
B
PRO
367
n
67
PRO
367
B
GLU
368
n
68
GLU
368
B
PRO
369
n
69
PRO
369
B
ILE
370
n
70
ILE
370
B
TYR
371
n
71
TYR
371
B
GLU
372
n
72
GLU
372
B
ALA
373
n
73
ALA
373
B
TYR
374
n
74
TYR
374
B
ASP
375
n
75
ASP
375
B
TYR
376
n
76
TYR
376
B
VAL
377
n
77
VAL
377
B
VAL
378
n
78
VAL
378
B
GLU
379
n
79
GLU
379
B
ASN
380
n
80
ASN
380
B
TYR
381
n
81
TYR
381
B
GLY
382
n
82
GLY
382
B
LYS
383
n
83
LYS
383
B
PRO
384
n
84
PRO
384
B
PHE
385
n
85
PHE
385
B
VAL
386
n
86
VAL
386
B
LEU
387
n
87
LEU
387
B
ILE
388
n
88
ILE
388
B
THR
389
n
89
THR
389
B
GLU
390
n
90
GLU
390
B
PRO
391
n
91
PRO
391
B
TRP
392
n
92
TRP
392
B
GLY
393
n
93
GLY
393
B
GLU
394
n
94
GLU
394
B
LYS
395
n
95
LYS
395
B
LEU
396
n
96
LEU
396
B
ASN
397
n
97
ASN
397
B
GLN
398
n
98
GLN
398
B
LYS
399
n
99
LYS
399
B
LEU
400
n
100
LEU
400
B
VAL
401
n
101
VAL
401
B
ASN
402
n
102
ASN
402
B
GLU
403
n
103
GLU
403
B
LEU
404
n
104
LEU
404
B
SER
405
n
105
SER
405
B
LYS
406
n
106
LYS
406
B
LYS
407
n
107
LYS
407
B
GLU
408
n
108
GLU
408
B
ARG
409
n
109
ARG
409
B
ILE
410
n
110
ILE
410
B
MET
411
n
111
MET
411
B
ILE
412
n
112
ILE
412
B
ILE
413
n
113
ILE
413
B
CYS
414
n
114
CYS
414
B
GLY
415
n
115
GLY
415
B
ARG
416
n
116
ARG
416
B
TYR
417
n
117
TYR
417
B
GLU
418
n
118
GLU
418
B
GLY
419
n
119
GLY
419
B
VAL
420
n
120
VAL
420
B
ASP
421
n
121
ASP
421
B
GLU
422
n
122
GLU
422
B
ARG
423
n
123
ARG
423
B
VAL
424
n
124
VAL
424
B
LYS
425
n
125
LYS
425
B
LYS
426
n
126
LYS
426
B
ILE
427
n
127
ILE
427
B
VAL
428
n
128
VAL
428
B
ASP
429
n
129
ASP
429
B
MET
430
n
130
MET
430
B
GLU
431
n
131
GLU
431
B
ILE
432
n
132
ILE
432
B
SER
433
n
133
SER
433
B
LEU
434
n
134
LEU
434
B
GLY
435
n
135
GLY
435
B
ASP
436
n
136
ASP
436
B
PHE
437
n
137
PHE
437
B
ILE
438
n
138
ILE
438
B
LEU
439
n
139
LEU
439
B
SER
440
n
140
SER
440
B
GLY
441
n
141
GLY
441
B
GLY
442
n
142
GLY
442
B
GLU
443
n
143
GLU
443
B
ILE
444
n
144
ILE
444
B
VAL
445
n
145
VAL
445
B
ALA
446
n
146
ALA
446
B
LEU
447
n
147
LEU
447
B
ALA
448
n
148
ALA
448
B
VAL
449
n
149
VAL
449
B
ILE
450
n
150
ILE
450
B
ASP
451
n
151
ASP
451
B
ALA
452
n
152
ALA
452
B
VAL
453
n
153
VAL
453
B
SER
454
n
154
SER
454
B
ARG
455
n
155
ARG
455
B
VAL
456
n
156
VAL
456
B
LEU
457
n
157
LEU
457
B
PRO
458
n
158
PRO
458
B
GLY
459
n
159
GLY
459
B
VAL
460
n
160
VAL
460
B
LEU
461
n
161
LEU
461
B
SER
462
n
162
SER
462
B
GLU
463
n
163
GLU
463
B
PRO
464
n
164
PRO
464
B
n
165
465
B
n
166
466
B
n
167
467
B
n
168
468
B
n
169
469
B
n
170
470
B
n
171
471
B
n
172
472
B
n
173
473
B
n
174
474
B
n
175
475
B
n
176
476
B
n
177
477
B
n
178
478
B
TYR
479
n
179
TYR
479
B
PRO
480
n
180
PRO
480
B
VAL
481
n
181
VAL
481
B
TYR
482
n
182
TYR
482
B
THR
483
n
183
THR
483
B
ARG
484
n
184
ARG
484
B
PRO
485
n
185
PRO
485
B
ARG
486
n
186
ARG
486
B
GLU
487
n
187
GLU
487
B
TYR
488
n
188
TYR
488
B
ARG
489
n
189
ARG
489
B
GLY
490
n
190
GLY
490
B
MET
491
n
191
MET
491
B
LYS
492
n
192
LYS
492
B
VAL
493
n
193
VAL
493
B
PRO
494
n
194
PRO
494
B
GLU
495
n
195
GLU
495
B
GLU
496
n
196
GLU
496
B
LEU
497
n
197
LEU
497
B
LEU
498
n
198
LEU
498
B
SER
499
n
199
SER
499
B
GLY
500
n
200
GLY
500
B
HIS
501
n
201
HIS
501
B
HIS
502
n
202
HIS
502
B
LYS
503
n
203
LYS
503
B
LEU
504
n
204
LEU
504
B
ILE
505
n
205
ILE
505
B
GLU
506
n
206
GLU
506
B
LEU
507
n
207
LEU
507
B
TRP
508
n
208
TRP
508
B
LYS
509
n
209
LYS
509
B
LEU
510
n
210
LEU
510
B
TRP
511
n
211
TRP
511
B
HIS
512
n
212
HIS
512
B
ARG
513
n
213
ARG
513
B
ILE
514
n
214
ILE
514
B
GLU
515
n
215
GLU
515
B
ASN
516
n
216
ASN
516
B
THR
517
n
217
THR
517
B
VAL
518
n
218
VAL
518
B
LYS
519
n
219
LYS
519
B
LYS
520
n
220
LYS
520
B
ARG
521
n
221
ARG
521
B
PRO
522
n
222
PRO
522
B
ASP
523
n
223
ASP
523
B
LEU
524
n
224
LEU
524
B
ILE
525
n
225
ILE
525
B
PRO
526
n
226
PRO
526
B
LYS
527
n
227
LYS
527
B
ASP
528
n
228
ASP
528
B
LEU
529
n
229
LEU
529
B
THR
530
n
230
THR
530
B
GLU
531
n
231
GLU
531
B
LEU
532
n
232
LEU
532
B
GLU
533
n
233
GLU
533
B
LYS
534
n
234
LYS
534
B
ASP
535
n
235
ASP
535
B
n
236
536
B
n
237
537
B
n
238
538
B
n
239
539
B
n
240
540
B
n
241
541
B
n
242
542
B
n
243
543
B
n
244
544
B
n
245
545
B
n
246
546
B
n
247
547
B
n
248
548
B
n
249
549
B
n
250
550
B
n
251
551
B
n
252
552
B
n
253
553
B
n
254
554
B
n
255
555
B
n
256
556
B
n
257
557
B
n
1
601
C
n
2
602
C
n
3
603
C
ASN
604
n
4
ASN
604
C
PRO
605
n
5
PRO
605
C
LEU
606
n
6
LEU
606
C
ARG
607
n
7
ARG
607
C
PHE
608
n
8
PHE
608
C
PHE
609
n
9
PHE
609
C
VAL
610
n
10
VAL
610
C
LEU
611
n
11
LEU
611
C
THR
612
n
12
THR
612
C
ILE
613
n
13
ILE
613
C
PHE
614
n
14
PHE
614
C
PRO
615
n
15
PRO
615
C
HIS
616
n
16
HIS
616
C
ILE
617
n
17
ILE
617
C
ILE
618
n
18
ILE
618
C
SER
619
n
19
SER
619
C
CYS
620
n
20
CYS
620
C
TYR
621
n
21
TYR
621
C
SER
622
n
22
SER
622
C
GLU
623
n
23
GLU
623
C
TYR
624
n
24
TYR
624
C
GLY
625
n
25
GLY
625
C
ILE
626
n
26
ILE
626
C
VAL
627
n
27
VAL
627
C
LYS
628
n
28
LYS
628
C
GLN
629
n
29
GLN
629
C
ALA
630
n
30
ALA
630
C
ILE
631
n
31
ILE
631
C
LYS
632
n
32
LYS
632
C
LYS
633
n
33
LYS
633
C
GLY
634
n
34
GLY
634
C
LYS
635
n
35
LYS
635
C
VAL
636
n
36
VAL
636
C
GLU
637
n
37
GLU
637
C
VAL
638
n
38
VAL
638
C
TYR
639
n
39
TYR
639
C
PRO
640
n
40
PRO
640
C
ILE
641
n
41
ILE
641
C
ASP
642
n
42
ASP
642
C
LEU
643
n
43
LEU
643
C
ARG
644
n
44
ARG
644
C
GLU
645
n
45
GLU
645
C
PHE
646
n
46
PHE
646
C
ALA
647
n
47
ALA
647
C
PRO
648
n
48
PRO
648
C
LYS
649
n
49
LYS
649
C
GLY
650
n
50
GLY
650
C
GLN
651
n
51
GLN
651
C
VAL
652
n
52
VAL
652
C
ASP
653
n
53
ASP
653
C
ASP
654
n
54
ASP
654
C
VAL
655
n
55
VAL
655
C
PRO
656
n
56
PRO
656
C
TYR
657
n
57
TYR
657
C
GLY
658
n
58
GLY
658
C
GLY
659
n
59
GLY
659
C
LEU
660
n
60
LEU
660
C
PRO
661
n
61
PRO
661
C
GLY
662
n
62
GLY
662
C
MET
663
n
63
MET
663
C
VAL
664
n
64
VAL
664
C
LEU
665
n
65
LEU
665
C
LYS
666
n
66
LYS
666
C
PRO
667
n
67
PRO
667
C
GLU
668
n
68
GLU
668
C
PRO
669
n
69
PRO
669
C
ILE
670
n
70
ILE
670
C
TYR
671
n
71
TYR
671
C
GLU
672
n
72
GLU
672
C
ALA
673
n
73
ALA
673
C
TYR
674
n
74
TYR
674
C
ASP
675
n
75
ASP
675
C
TYR
676
n
76
TYR
676
C
VAL
677
n
77
VAL
677
C
VAL
678
n
78
VAL
678
C
GLU
679
n
79
GLU
679
C
ASN
680
n
80
ASN
680
C
TYR
681
n
81
TYR
681
C
GLY
682
n
82
GLY
682
C
LYS
683
n
83
LYS
683
C
PRO
684
n
84
PRO
684
C
PHE
685
n
85
PHE
685
C
VAL
686
n
86
VAL
686
C
LEU
687
n
87
LEU
687
C
ILE
688
n
88
ILE
688
C
THR
689
n
89
THR
689
C
GLU
690
n
90
GLU
690
C
PRO
691
n
91
PRO
691
C
TRP
692
n
92
TRP
692
C
GLY
693
n
93
GLY
693
C
GLU
694
n
94
GLU
694
C
LYS
695
n
95
LYS
695
C
LEU
696
n
96
LEU
696
C
ASN
697
n
97
ASN
697
C
GLN
698
n
98
GLN
698
C
LYS
699
n
99
LYS
699
C
LEU
700
n
100
LEU
700
C
VAL
701
n
101
VAL
701
C
ASN
702
n
102
ASN
702
C
GLU
703
n
103
GLU
703
C
LEU
704
n
104
LEU
704
C
SER
705
n
105
SER
705
C
LYS
706
n
106
LYS
706
C
LYS
707
n
107
LYS
707
C
GLU
708
n
108
GLU
708
C
ARG
709
n
109
ARG
709
C
ILE
710
n
110
ILE
710
C
MET
711
n
111
MET
711
C
ILE
712
n
112
ILE
712
C
ILE
713
n
113
ILE
713
C
CYS
714
n
114
CYS
714
C
GLY
715
n
115
GLY
715
C
ARG
716
n
116
ARG
716
C
TYR
717
n
117
TYR
717
C
GLU
718
n
118
GLU
718
C
GLY
719
n
119
GLY
719
C
VAL
720
n
120
VAL
720
C
ASP
721
n
121
ASP
721
C
GLU
722
n
122
GLU
722
C
ARG
723
n
123
ARG
723
C
VAL
724
n
124
VAL
724
C
LYS
725
n
125
LYS
725
C
LYS
726
n
126
LYS
726
C
ILE
727
n
127
ILE
727
C
VAL
728
n
128
VAL
728
C
ASP
729
n
129
ASP
729
C
MET
730
n
130
MET
730
C
GLU
731
n
131
GLU
731
C
ILE
732
n
132
ILE
732
C
SER
733
n
133
SER
733
C
LEU
734
n
134
LEU
734
C
GLY
735
n
135
GLY
735
C
ASP
736
n
136
ASP
736
C
PHE
737
n
137
PHE
737
C
ILE
738
n
138
ILE
738
C
LEU
739
n
139
LEU
739
C
SER
740
n
140
SER
740
C
GLY
741
n
141
GLY
741
C
GLY
742
n
142
GLY
742
C
GLU
743
n
143
GLU
743
C
ILE
744
n
144
ILE
744
C
VAL
745
n
145
VAL
745
C
ALA
746
n
146
ALA
746
C
LEU
747
n
147
LEU
747
C
ALA
748
n
148
ALA
748
C
VAL
749
n
149
VAL
749
C
ILE
750
n
150
ILE
750
C
ASP
751
n
151
ASP
751
C
ALA
752
n
152
ALA
752
C
VAL
753
n
153
VAL
753
C
SER
754
n
154
SER
754
C
ARG
755
n
155
ARG
755
C
VAL
756
n
156
VAL
756
C
LEU
757
n
157
LEU
757
C
PRO
758
n
158
PRO
758
C
GLY
759
n
159
GLY
759
C
VAL
760
n
160
VAL
760
C
LEU
761
n
161
LEU
761
C
SER
762
n
162
SER
762
C
GLU
763
n
163
GLU
763
C
PRO
764
n
164
PRO
764
C
n
165
765
C
n
166
766
C
n
167
767
C
n
168
768
C
n
169
769
C
n
170
770
C
n
171
771
C
n
172
772
C
n
173
773
C
n
174
774
C
n
175
775
C
n
176
776
C
n
177
777
C
n
178
778
C
TYR
779
n
179
TYR
779
C
PRO
780
n
180
PRO
780
C
VAL
781
n
181
VAL
781
C
TYR
782
n
182
TYR
782
C
THR
783
n
183
THR
783
C
ARG
784
n
184
ARG
784
C
PRO
785
n
185
PRO
785
C
ARG
786
n
186
ARG
786
C
GLU
787
n
187
GLU
787
C
TYR
788
n
188
TYR
788
C
ARG
789
n
189
ARG
789
C
GLY
790
n
190
GLY
790
C
MET
791
n
191
MET
791
C
LYS
792
n
192
LYS
792
C
VAL
793
n
193
VAL
793
C
PRO
794
n
194
PRO
794
C
GLU
795
n
195
GLU
795
C
GLU
796
n
196
GLU
796
C
LEU
797
n
197
LEU
797
C
LEU
798
n
198
LEU
798
C
SER
799
n
199
SER
799
C
GLY
800
n
200
GLY
800
C
HIS
801
n
201
HIS
801
C
HIS
802
n
202
HIS
802
C
LYS
803
n
203
LYS
803
C
LEU
804
n
204
LEU
804
C
ILE
805
n
205
ILE
805
C
GLU
806
n
206
GLU
806
C
LEU
807
n
207
LEU
807
C
TRP
808
n
208
TRP
808
C
LYS
809
n
209
LYS
809
C
LEU
810
n
210
LEU
810
C
TRP
811
n
211
TRP
811
C
HIS
812
n
212
HIS
812
C
ARG
813
n
213
ARG
813
C
ILE
814
n
214
ILE
814
C
GLU
815
n
215
GLU
815
C
ASN
816
n
216
ASN
816
C
THR
817
n
217
THR
817
C
VAL
818
n
218
VAL
818
C
LYS
819
n
219
LYS
819
C
LYS
820
n
220
LYS
820
C
ARG
821
n
221
ARG
821
C
PRO
822
n
222
PRO
822
C
ASP
823
n
223
ASP
823
C
LEU
824
n
224
LEU
824
C
ILE
825
n
225
ILE
825
C
PRO
826
n
226
PRO
826
C
LYS
827
n
227
LYS
827
C
ASP
828
n
228
ASP
828
C
LEU
829
n
229
LEU
829
C
THR
830
n
230
THR
830
C
GLU
831
n
231
GLU
831
C
LEU
832
n
232
LEU
832
C
GLU
833
n
233
GLU
833
C
LYS
834
n
234
LYS
834
C
ASP
835
n
235
ASP
835
C
n
236
836
C
n
237
837
C
n
238
838
C
n
239
839
C
n
240
840
C
n
241
841
C
n
242
842
C
n
243
843
C
n
244
844
C
n
245
845
C
n
246
846
C
n
247
847
C
n
248
848
C
n
249
849
C
n
250
850
C
n
251
851
C
n
252
852
C
n
253
853
C
n
254
854
C
n
255
855
C
n
256
856
C
n
257
857
C
2.5478
0.5433
-0.6714
4.4106
0.2262
4.9878
-0.2551
-0.0388
-0.1883
0.0163
0.2507
-0.3595
0.2735
0.3899
0.0044
0.0666
0.0124
-0.0099
0.1279
-0.0875
0.1293
refined
-37.5218
-10.1920
9.4359
X-RAY DIFFRACTION
4.1335
-0.6957
0.8279
1.5050
0.1464
3.9270
0.0042
-0.0960
0.0696
-0.0264
-0.0145
0.0010
-0.0095
0.0265
0.0103
0.0550
-0.0103
0.0013
0.0545
0.0043
0.0294
refined
-14.3445
42.2779
24.2227
X-RAY DIFFRACTION
4.1294
2.1136
-1.3969
5.7814
-1.0157
3.6675
-0.0354
-0.2038
0.0383
-0.2687
-0.0343
-0.5903
-0.0397
0.1815
0.0696
0.1551
-0.0905
0.0010
0.1425
-0.1462
0.2362
refined
-25.3947
10.2309
4.8704
X-RAY DIFFRACTION
13.2934
0.5164
2.2644
6.5572
-2.5674
9.1935
-0.2886
0.5279
-2.4543
-1.2192
-0.3898
-1.4608
1.8869
1.0217
0.6784
1.0256
-0.1660
0.7649
0.5520
-0.1537
1.3512
refined
-9.6140
5.7910
-9.9538
X-RAY DIFFRACTION
8.8721
-0.8664
3.2591
9.6893
-1.3787
3.1473
0.1145
-0.5782
1.6154
0.4607
-0.2011
0.9953
-0.9943
0.3086
0.0867
0.4929
-0.2334
0.1856
0.3624
-0.2241
0.5112
refined
8.5896
57.6801
48.8469
X-RAY DIFFRACTION
18.5065
-3.7492
-4.2862
4.4409
4.2074
-1.0641
-0.8130
-0.7501
0.3196
0.9449
0.9271
-1.0207
1.3593
0.4979
-0.1141
1.1212
0.5794
-0.3177
0.5548
0.0003
0.5300
refined
-26.7051
-20.3982
25.9528
X-RAY DIFFRACTION
A
4
A
4
A
164
A
164
X-RAY DIFFRACTION
1
B
304
B
4
B
464
B
164
X-RAY DIFFRACTION
2
C
604
C
4
C
764
C
164
X-RAY DIFFRACTION
3
A
179
A
179
A
235
A
235
X-RAY DIFFRACTION
4
B
479
B
179
B
535
B
235
X-RAY DIFFRACTION
5
C
779
C
179
C
835
C
235
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
2
dimeric
author_defined_assembly
2
dimeric
6480
-41
21450
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_556
-x,y,-z+1
crystal symmetry operation
-6.2418259040
0.0000000000
57.0857695523
A
O
GLU
37
A
O
GLU
37
A
N
PHE
8
A
N
PHE
8
A
N
PHE
9
A
N
PHE
9
A
O
ILE
112
A
O
ILE
112
A
O
MET
111
A
O
MET
111
A
N
LEU
87
A
N
LEU
87
A
N
ILE
88
A
N
ILE
88
A
O
MET
130
A
O
MET
130
A
N
ASP
54
A
N
ASP
54
A
O
VAL
64
A
O
VAL
64
A
N
TYR
188
A
N
TYR
188
A
O
MET
191
A
O
MET
191
B
O
ILE
341
B
O
ILE
41
B
N
VAL
310
B
N
VAL
10
B
N
PHE
309
B
N
PHE
9
B
O
ILE
410
B
O
ILE
110
B
O
MET
411
B
O
MET
111
B
N
LEU
387
B
N
LEU
87
B
N
ILE
388
B
N
ILE
88
B
O
MET
430
B
O
MET
130
B
N
ASP
354
B
N
ASP
54
B
O
VAL
364
B
O
VAL
64
B
N
TYR
488
B
N
TYR
188
B
O
MET
491
B
O
MET
191
C
O
TYR
639
C
O
TYR
39
C
N
PHE
608
C
N
PHE
8
C
N
PHE
609
C
N
PHE
9
C
O
ILE
710
C
O
ILE
110
C
O
MET
711
C
O
MET
111
C
N
LEU
687
C
N
LEU
87
C
N
ILE
688
C
N
ILE
88
C
O
MET
730
C
O
MET
130
C
N
ASP
654
C
N
ASP
54
C
O
VAL
664
C
O
VAL
64
C
N
TYR
788
C
N
TYR
188
C
O
MET
791
C
O
MET
191
1
B
ND2
ASN
304
B
ND2
ASN
4
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
GLN
165
A
GLN
165
1
Y
1
A
SER
166
A
SER
166
1
Y
1
A
ILE
167
A
ILE
167
1
Y
1
A
GLN
168
A
GLN
168
1
Y
1
A
GLU
169
A
GLU
169
1
Y
1
A
ASP
170
A
ASP
170
1
Y
1
A
SER
171
A
SER
171
1
Y
1
A
PHE
172
A
PHE
172
1
Y
1
A
GLN
173
A
GLN
173
1
Y
1
A
ASN
174
A
ASN
174
1
Y
1
A
ARG
175
A
ARG
175
1
Y
1
A
TRP
176
A
TRP
176
1
Y
1
A
LEU
177
A
LEU
177
1
Y
1
A
GLY
178
A
GLY
178
1
Y
1
A
ILE
236
A
ILE
236
1
Y
1
A
LEU
237
A
LEU
237
1
Y
1
A
ASN
238
A
ASN
238
1
Y
1
A
SER
239
A
SER
239
1
Y
1
A
ILE
240
A
ILE
240
1
Y
1
A
LEU
241
A
LEU
241
1
Y
1
A
SER
242
A
SER
242
1
Y
1
A
GLY
243
A
GLY
243
1
Y
1
A
LYS
244
A
LYS
244
1
Y
1
A
SER
245
A
SER
245
1
Y
1
A
PHE
246
A
PHE
246
1
Y
1
A
LYS
247
A
LYS
247
1
Y
1
A
GLU
248
A
GLU
248
1
Y
1
A
TRP
249
A
TRP
249
1
Y
1
A
LEU
250
A
LEU
250
1
Y
1
A
LYS
251
A
LYS
251
1
Y
1
A
GLU
252
A
GLU
252
1
Y
1
A
HIS
253
A
HIS
253
1
Y
1
A
LYS
254
A
LYS
254
1
Y
1
A
HIS
255
A
HIS
255
1
Y
1
A
LEU
256
A
LEU
256
1
Y
1
A
LEU
257
A
LEU
257
1
Y
1
B
MET
301
B
MET
1
1
Y
1
B
SER
302
B
SER
2
1
Y
1
B
SER
303
B
SER
3
1
Y
1
B
GLN
465
B
GLN
165
1
Y
1
B
SER
466
B
SER
166
1
Y
1
B
ILE
467
B
ILE
167
1
Y
1
B
GLN
468
B
GLN
168
1
Y
1
B
GLU
469
B
GLU
169
1
Y
1
B
ASP
470
B
ASP
170
1
Y
1
B
SER
471
B
SER
171
1
Y
1
B
PHE
472
B
PHE
172
1
Y
1
B
GLN
473
B
GLN
173
1
Y
1
B
ASN
474
B
ASN
174
1
Y
1
B
ARG
475
B
ARG
175
1
Y
1
B
TRP
476
B
TRP
176
1
Y
1
B
LEU
477
B
LEU
177
1
Y
1
B
GLY
478
B
GLY
178
1
Y
1
B
ILE
536
B
ILE
236
1
Y
1
B
LEU
537
B
LEU
237
1
Y
1
B
ASN
538
B
ASN
238
1
Y
1
B
SER
539
B
SER
239
1
Y
1
B
ILE
540
B
ILE
240
1
Y
1
B
LEU
541
B
LEU
241
1
Y
1
B
SER
542
B
SER
242
1
Y
1
B
GLY
543
B
GLY
243
1
Y
1
B
LYS
544
B
LYS
244
1
Y
1
B
SER
545
B
SER
245
1
Y
1
B
PHE
546
B
PHE
246
1
Y
1
B
LYS
547
B
LYS
247
1
Y
1
B
GLU
548
B
GLU
248
1
Y
1
B
TRP
549
B
TRP
249
1
Y
1
B
LEU
550
B
LEU
250
1
Y
1
B
LYS
551
B
LYS
251
1
Y
1
B
GLU
552
B
GLU
252
1
Y
1
B
HIS
553
B
HIS
253
1
Y
1
B
LYS
554
B
LYS
254
1
Y
1
B
HIS
555
B
HIS
255
1
Y
1
B
LEU
556
B
LEU
256
1
Y
1
B
LEU
557
B
LEU
257
1
Y
1
C
MET
601
C
MET
1
1
Y
1
C
SER
602
C
SER
2
1
Y
1
C
SER
603
C
SER
3
1
Y
1
C
GLN
765
C
GLN
165
1
Y
1
C
SER
766
C
SER
166
1
Y
1
C
ILE
767
C
ILE
167
1
Y
1
C
GLN
768
C
GLN
168
1
Y
1
C
GLU
769
C
GLU
169
1
Y
1
C
ASP
770
C
ASP
170
1
Y
1
C
SER
771
C
SER
171
1
Y
1
C
PHE
772
C
PHE
172
1
Y
1
C
GLN
773
C
GLN
173
1
Y
1
C
ASN
774
C
ASN
174
1
Y
1
C
ARG
775
C
ARG
175
1
Y
1
C
TRP
776
C
TRP
176
1
Y
1
C
LEU
777
C
LEU
177
1
Y
1
C
GLY
778
C
GLY
178
1
Y
1
C
ILE
836
C
ILE
236
1
Y
1
C
LEU
837
C
LEU
237
1
Y
1
C
ASN
838
C
ASN
238
1
Y
1
C
SER
839
C
SER
239
1
Y
1
C
ILE
840
C
ILE
240
1
Y
1
C
LEU
841
C
LEU
241
1
Y
1
C
SER
842
C
SER
242
1
Y
1
C
GLY
843
C
GLY
243
1
Y
1
C
LYS
844
C
LYS
244
1
Y
1
C
SER
845
C
SER
245
1
Y
1
C
PHE
846
C
PHE
246
1
Y
1
C
LYS
847
C
LYS
247
1
Y
1
C
GLU
848
C
GLU
248
1
Y
1
C
TRP
849
C
TRP
249
1
Y
1
C
LEU
850
C
LEU
250
1
Y
1
C
LYS
851
C
LYS
251
1
Y
1
C
GLU
852
C
GLU
252
1
Y
1
C
HIS
853
C
HIS
253
1
Y
1
C
LYS
854
C
LYS
254
1
Y
1
C
HIS
855
C
HIS
255
1
Y
1
C
LEU
856
C
LEU
256
1
Y
1
C
LEU
857
C
LEU
257
1
Y
1
B
CA
ASP
535
PLANAR
1
A
A
C
CD
ASN
PRO
4
5
1.70
1
C
C
OG
NZ
SER
LYS
799
803
1.78
1
C
C
O
N
PRO
GLY
648
650
2.02
1
A
A
O
ND2
GLN
ASN
98
102
2.03
1
A
A
OG1
O
THR
HOH
230
265
2.08
1
C
C
OE2
NZ
GLU
LYS
722
725
2.11
1
A
A
OG
NZ
SER
LYS
199
203
2.11
1
B
B
O
OG
ASN
SER
402
405
2.11
1
C
C
O
N
LYS
GLN
649
651
2.18
1
A
A
GLU
PRO
163
164
140.21
1
27.63
2.40
127.00
154.63
A
A
A
C
N
CA
ASN
PRO
PRO
4
5
5
Y
1
-45.68
2.20
120.60
74.92
A
A
A
C
N
CD
ASN
PRO
PRO
4
5
5
Y
1
-16.05
2.10
128.40
112.35
A
A
A
C
N
CD
GLU
PRO
PRO
163
164
164
Y
1
-18.78
2.70
111.00
92.22
A
A
A
N
CA
C
HIS
HIS
HIS
201
201
201
N
1
5.42
0.90
118.30
123.72
B
B
B
CB
CG
OD2
ASP
ASP
ASP
342
342
342
N
1
-15.84
2.50
113.10
97.26
B
B
B
N
CA
C
GLY
GLY
GLY
435
435
435
N
1
6.68
0.90
118.30
124.98
B
B
B
CB
CG
OD2
ASP
ASP
ASP
436
436
436
N
1
-20.17
2.70
111.00
90.83
B
B
B
N
CA
C
HIS
HIS
HIS
501
501
501
N
1
6.01
0.90
118.30
124.31
B
B
B
CB
CG
OD2
ASP
ASP
ASP
528
528
528
N
1
13.14
1.80
110.60
123.74
B
B
B
N
CA
CB
ASP
ASP
ASP
535
535
535
N
1
7.42
0.90
118.30
125.72
C
C
C
CB
CG
OD2
ASP
ASP
ASP
675
675
675
N
1
5.74
0.90
118.30
124.04
C
C
C
CB
CG
OD2
ASP
ASP
ASP
721
721
721
N
1
5.56
0.90
118.30
123.86
C
C
C
CB
CG
OD2
ASP
ASP
ASP
751
751
751
N
1
A
C
NE2
O
HIS
VAL
201
756
1.96
1_555
1_554
1
A
C
O
OE2
GLU
GLU
79
672
2.09
1_555
4_445
1
A
PRO
5
-166.35
108.80
1
A
PRO
48
-43.23
-85.95
1
A
PRO
91
-34.30
-28.72
1
A
GLU
94
-153.42
70.79
1
A
TYR
117
54.37
-137.47
1
A
SER
133
-47.43
157.62
1
A
LEU
134
-48.38
154.87
1
A
ASP
136
96.32
-7.39
1
A
VAL
160
-97.64
-62.95
1
A
SER
162
-52.89
53.35
1
A
GLU
163
97.44
38.51
1
A
ARG
184
-28.32
-45.64
1
A
PRO
185
-47.17
95.15
1
A
PRO
194
-39.18
105.56
1
A
SER
199
-105.83
-168.66
1
A
ASP
223
-135.38
-98.05
1
A
LEU
224
-170.15
-126.89
1
A
GLU
231
-140.57
-36.17
1
B
PRO
305
-10.18
141.20
1
B
PRO
348
-44.50
-70.29
1
B
PRO
361
-51.90
62.47
1
B
GLU
394
-153.37
68.30
1
B
TYR
417
60.10
-133.52
1
B
VAL
460
-98.36
-63.14
1
B
ARG
484
-28.37
-52.98
1
B
PRO
485
-50.08
100.45
1
B
SER
499
83.64
107.24
1
B
PRO
522
-38.11
-28.42
1
B
ASP
523
-135.78
-81.26
1
B
LEU
524
174.42
-145.31
1
B
LEU
529
-95.37
-71.64
1
B
GLU
531
169.98
-66.89
1
C
PRO
648
-43.46
-159.95
1
C
LYS
649
-42.95
59.48
1
C
GLN
651
-59.80
91.18
1
C
GLU
694
-152.44
67.05
1
C
TYR
717
44.22
-141.09
1
C
GLU
718
-69.25
5.15
1
C
VAL
760
-96.95
-68.59
1
C
SER
762
-12.66
-103.94
1
C
ARG
784
-25.22
-60.48
1
C
PRO
785
-45.54
107.49
1
C
HIS
802
-87.44
30.27
1
C
LYS
803
-142.73
-8.67
1
C
ARG
813
-46.58
-14.12
1
C
ASP
823
-174.43
74.49
1
C
LEU
824
58.10
-135.67
1
C
PRO
826
-30.18
-70.29
1
C
LYS
834
166.77
-11.78
29.025
-0.75
0.00
0.16
1.89
0.00
-1.10
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.30029
0.27937
0.28048
2.60
20.00
1312
24191
24034
5.2
99.35
20.353
0.454
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MAD
1.086
0.377
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.60
20.00
76
5379
0
0
5303
0.343
0.298
2.666
90
1734
20
2.58
20
1OY5
31977
1.0
1.0
1
2.58
2.64
1
96.7
data collection
HKL-2000
data reduction
HKL-2000
refinement
REFMAC
5
data reduction
HKL-2000
data scaling
HKL-2000
tRNA (Guanine-N(1)-)-methyltransferase
Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
A
PHE
14
A
PHE
14
HELX_P
A
SER
22
A
SER
22
1
1
9
A
TYR
24
A
TYR
24
HELX_P
A
LYS
33
A
LYS
33
1
2
10
A
ARG
44
A
ARG
44
HELX_P
A
ALA
47
A
ALA
47
5
3
4
A
LYS
66
A
LYS
66
HELX_P
A
GLY
82
A
GLY
82
1
4
17
A
ASN
97
A
ASN
97
HELX_P
A
LYS
106
A
LYS
106
1
5
10
A
ASP
121
A
ASP
121
HELX_P
A
VAL
128
A
VAL
128
5
6
8
A
GLY
142
A
GLY
142
HELX_P
A
VAL
156
A
VAL
156
1
7
15
A
PRO
194
A
PRO
194
HELX_P
A
LEU
198
A
LEU
198
5
8
5
A
GLU
206
A
GLU
206
HELX_P
A
ILE
214
A
ILE
214
1
9
9
A
ASN
216
A
ASN
216
HELX_P
A
LYS
220
A
LYS
220
5
10
5
A
LYS
227
A
LYS
227
HELX_P
A
GLU
231
A
GLU
231
5
11
5
B
PHE
314
B
PHE
14
HELX_P
B
SER
322
B
SER
22
1
12
9
B
TYR
324
B
TYR
24
HELX_P
B
LYS
333
B
LYS
33
1
13
10
B
ARG
344
B
ARG
44
HELX_P
B
ALA
347
B
ALA
47
5
14
4
B
LYS
366
B
LYS
66
HELX_P
B
TYR
381
B
TYR
81
1
15
16
B
ASN
397
B
ASN
97
HELX_P
B
LYS
406
B
LYS
106
1
16
10
B
ASP
421
B
ASP
121
HELX_P
B
VAL
428
B
VAL
128
5
17
8
B
GLY
442
B
GLY
142
HELX_P
B
LEU
457
B
LEU
157
1
18
16
B
PRO
494
B
PRO
194
HELX_P
B
LEU
498
B
LEU
198
5
19
5
B
LYS
503
B
LYS
203
HELX_P
B
ILE
514
B
ILE
214
1
20
12
B
ASN
516
B
ASN
216
HELX_P
B
ARG
521
B
ARG
221
1
21
6
C
PHE
614
C
PHE
14
HELX_P
C
SER
622
C
SER
22
1
22
9
C
TYR
624
C
TYR
24
HELX_P
C
LYS
633
C
LYS
33
1
23
10
C
ARG
644
C
ARG
44
HELX_P
C
ALA
647
C
ALA
47
5
24
4
C
LYS
666
C
LYS
66
HELX_P
C
TYR
681
C
TYR
81
1
25
16
C
ASN
697
C
ASN
97
HELX_P
C
LYS
706
C
LYS
106
1
26
10
C
ASP
721
C
ASP
121
HELX_P
C
VAL
728
C
VAL
128
5
27
8
C
GLY
742
C
GLY
142
HELX_P
C
VAL
756
C
VAL
156
1
28
15
C
PRO
794
C
PRO
194
HELX_P
C
SER
799
C
SER
199
5
29
6
C
GLY
800
C
GLY
200
HELX_P
C
LEU
804
C
LEU
204
5
30
5
C
GLU
806
C
GLU
206
HELX_P
C
ILE
814
C
ILE
214
1
31
9
C
LYS
827
C
LYS
227
HELX_P
C
LEU
832
C
LEU
232
1
32
6
disulf
2.980
B
CYS
320
B
SG
CYS
20
1_555
B
CYS
320
B
SG
CYS
20
2_556
TRANSFERASE
structural genomics, trmD, tRNA (m1G37) methyltransferase, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center, TRANSFERASE
A
ASN
4
A
ASN
4
1
A
PRO
5
A
PRO
5
-25.61
TRMD_AQUAE
UNP
1
1
O67463
MSSNPLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQVDDVPYGGLPGMVLKPEPIYEAYDYVVEN
YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGEIVALAVIDAVSRVLPGV
LSEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTELEKDILNSI
LSGKSFKEWLKEHKHLL
1
257
1OY5
1
257
O67463
A
1
1
257
1
257
1OY5
301
557
O67463
B
1
1
257
1
257
1OY5
601
857
O67463
C
1
1
257
5
2
2
5
2
2
5
2
2
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
36
A
VAL
36
A
ASP
42
A
ASP
42
A
LEU
6
A
LEU
6
A
THR
12
A
THR
12
A
ARG
109
A
ARG
109
A
CYS
114
A
CYS
114
A
PHE
85
A
PHE
85
A
THR
89
A
THR
89
A
MET
130
A
MET
130
A
GLU
131
A
GLU
131
A
ASP
53
A
ASP
53
A
ASP
54
A
ASP
54
A
VAL
64
A
VAL
64
A
LEU
65
A
LEU
65
A
GLU
187
A
GLU
187
A
TYR
188
A
TYR
188
A
MET
191
A
MET
191
A
LYS
192
A
LYS
192
B
VAL
336
B
VAL
36
B
ASP
342
B
ASP
42
B
LEU
306
B
LEU
6
B
THR
312
B
THR
12
B
ARG
409
B
ARG
109
B
CYS
414
B
CYS
114
B
PHE
385
B
PHE
85
B
THR
389
B
THR
89
B
MET
430
B
MET
130
B
GLU
431
B
GLU
131
B
ASP
353
B
ASP
53
B
ASP
354
B
ASP
54
B
VAL
364
B
VAL
64
B
LEU
365
B
LEU
65
B
GLU
487
B
GLU
187
B
TYR
488
B
TYR
188
B
MET
491
B
MET
191
B
LYS
492
B
LYS
192
C
VAL
636
C
VAL
36
C
ASP
642
C
ASP
42
C
LEU
606
C
LEU
6
C
THR
612
C
THR
12
C
ARG
709
C
ARG
109
C
CYS
714
C
CYS
114
C
PHE
685
C
PHE
85
C
THR
689
C
THR
89
C
MET
730
C
MET
130
C
GLU
731
C
GLU
131
C
ASP
653
C
ASP
53
C
ASP
654
C
ASP
54
C
VAL
664
C
VAL
64
C
LEU
665
C
LEU
65
C
GLU
787
C
GLU
187
C
TYR
788
C
TYR
188
C
MET
791
C
MET
191
C
LYS
792
C
LYS
192
5
C 1 2 1