1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Walma, T. Aelen, J. Oostendorp, M. van den Berk, L. Hendriks, W. Vuister, G.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 12 11 20 10.1016/j.str.2003.11.023 14725761 A Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL. 2004 10.2210/pdb1ozi/pdb pdb_00001ozi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 Longer alternative splice variant 10370.792 protein tyrosine phosphatase 3.1.3.48 PDZ2 of PTP-BL INS (VLFDK-G36) 1 man polymer NONRECEPTOR-TYPE, 13, PROTEIN-TYROSINE PHOSPHATASE RIP, PHOSPHOPROTEIN PHOSPHATASE, PROTEIN-TYROSINE-PHOSPHATASE, PHOSPHOTYROSINE PHOSPHATASE, PTPASE, PTP36, BAS-LIKE no no KPGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE TLRNTGQVVHLLLEKGQVP KPGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE TLRNTGQVVHLLLEKGQVP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample PTP-BL 10090 Mus musculus 562 Escherichia coli Escherichia coli BL21 Codon Plus (DE3) RIL competent PLASMID pGEX-2T database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2004-01-27 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details chemical shift and J coupling information PDZ2 of PTP-BL chemical shift and J coupling information for PDZ2 of PTP-BL RCSB Y RCSB 2003-04-09 REL REL The structure was determined using triple-resonance NMR spectroscopy. structures with the lowest energy 200 30 3D_15N-separated_NOESY 3D_13C-separated_NOESY HNHA 100 6.8 1 atm 298 K The structures are based on a total of 1459 restraints: 1354 are NOE-derived distance constraints, 76 dihedral angle restraints, 29 distance restraints from hydrogen bonds cartesian space distance geometry, restrained molecular dynamics 1 closest to the average 1.4mM PDZ2_AS, 13C/15N labelled, 50mM potassium phosphate buffer, 50mM KCl 95% H20, 5% D20 Delaglio et al. processing NMRPipe Brunger refinement X-PLOR 3.851 Brunger, NIH refinement X-PLOR NIH 600 Varian INOVA 800 Varian INOVA LYS 9 n 1 LYS 9 A PRO 10 n 2 PRO 10 A GLY 11 n 3 GLY 11 A ASP 12 n 4 ASP 12 A THR 13 n 5 THR 13 A PHE 14 n 6 PHE 14 A GLU 15 n 7 GLU 15 A VAL 16 n 8 VAL 16 A GLU 17 n 9 GLU 17 A LEU 18 n 10 LEU 18 A ALA 19 n 11 ALA 19 A LYS 20 n 12 LYS 20 A THR 21 n 13 THR 21 A ASP 22 n 14 ASP 22 A GLY 23 n 15 GLY 23 A SER 24 n 16 SER 24 A LEU 25 n 17 LEU 25 A GLY 26 n 18 GLY 26 A ILE 27 n 19 ILE 27 A SER 28 n 20 SER 28 A VAL 29 n 21 VAL 29 A THR 30 n 22 THR 30 A VAL 31 n 23 VAL 31 A LEU 32 n 24 LEU 32 A PHE 33 n 25 PHE 33 A ASP 34 n 26 ASP 34 A LYS 35 n 27 LYS 35 A GLY 36 n 28 GLY 36 A GLY 37 n 29 GLY 37 A VAL 38 n 30 VAL 38 A ASN 39 n 31 ASN 39 A THR 40 n 32 THR 40 A SER 41 n 33 SER 41 A VAL 42 n 34 VAL 42 A ARG 43 n 35 ARG 43 A HIS 44 n 36 HIS 44 A GLY 45 n 37 GLY 45 A GLY 46 n 38 GLY 46 A ILE 47 n 39 ILE 47 A TYR 48 n 40 TYR 48 A VAL 49 n 41 VAL 49 A LYS 50 n 42 LYS 50 A ALA 51 n 43 ALA 51 A ILE 52 n 44 ILE 52 A ILE 53 n 45 ILE 53 A PRO 54 n 46 PRO 54 A LYS 55 n 47 LYS 55 A GLY 56 n 48 GLY 56 A ALA 57 n 49 ALA 57 A ALA 58 n 50 ALA 58 A GLU 59 n 51 GLU 59 A SER 60 n 52 SER 60 A ASP 61 n 53 ASP 61 A GLY 62 n 54 GLY 62 A ARG 63 n 55 ARG 63 A ILE 64 n 56 ILE 64 A HIS 65 n 57 HIS 65 A LYS 66 n 58 LYS 66 A GLY 67 n 59 GLY 67 A ASP 68 n 60 ASP 68 A ARG 69 n 61 ARG 69 A VAL 70 n 62 VAL 70 A LEU 71 n 63 LEU 71 A ALA 72 n 64 ALA 72 A VAL 73 n 65 VAL 73 A ASN 74 n 66 ASN 74 A GLY 75 n 67 GLY 75 A VAL 76 n 68 VAL 76 A SER 77 n 69 SER 77 A LEU 78 n 70 LEU 78 A GLU 79 n 71 GLU 79 A GLY 80 n 72 GLY 80 A ALA 81 n 73 ALA 81 A THR 82 n 74 THR 82 A HIS 83 n 75 HIS 83 A LYS 84 n 76 LYS 84 A GLN 85 n 77 GLN 85 A ALA 86 n 78 ALA 86 A VAL 87 n 79 VAL 87 A GLU 88 n 80 GLU 88 A THR 89 n 81 THR 89 A LEU 90 n 82 LEU 90 A ARG 91 n 83 ARG 91 A ASN 92 n 84 ASN 92 A THR 93 n 85 THR 93 A GLY 94 n 86 GLY 94 A GLN 95 n 87 GLN 95 A VAL 96 n 88 VAL 96 A VAL 97 n 89 VAL 97 A HIS 98 n 90 HIS 98 A LEU 99 n 91 LEU 99 A LEU 100 n 92 LEU 100 A LEU 101 n 93 LEU 101 A GLU 102 n 94 GLU 102 A LYS 103 n 95 LYS 103 A GLY 104 n 96 GLY 104 A GLN 105 n 97 GLN 105 A VAL 106 n 98 VAL 106 A PRO 107 n 99 PRO 107 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 18 A N LEU 10 A O VAL 97 A O VAL 89 A O GLU 102 A O GLU 94 A N ARG 69 A N ARG 61 A O VAL 70 A O VAL 62 A N ILE 47 A N ILE 39 A O TYR 48 A O TYR 40 A N THR 30 A N THR 22 A N LEU 18 A N LEU 10 A O VAL 97 A O VAL 89 A O GLU 102 A O GLU 94 A N ARG 69 A N ARG 61 A N VAL 73 A N VAL 65 A O VAL 76 A O VAL 68 4 A A HG12 HG22 VAL THR 73 89 1.18 5 A A OE1 HH12 GLU ARG 17 63 1.58 7 A A HG11 HG22 VAL THR 73 89 1.16 8 A A HZ1 OD2 LYS ASP 9 12 1.58 9 A A OD2 HE ASP ARG 61 63 1.60 10 A A HA2 HA GLY LEU 45 71 1.34 10 A A OD2 HZ1 ASP LYS 68 103 1.59 11 A A HB2 H PRO LYS 54 55 1.20 11 A A OD2 HZ3 ASP LYS 68 103 1.60 12 A A HG11 HG22 VAL THR 73 89 1.20 13 A A HZ1 OE2 LYS GLU 84 88 1.59 14 A A HB HB ILE VAL 47 70 1.30 15 A A HD23 HA LEU ALA 18 58 1.31 15 A A HG23 HB2 ILE GLU 52 59 1.35 16 A A HG11 HG21 VAL THR 73 89 1.20 16 A A HG21 HB2 ILE GLU 52 59 1.24 16 A A HD21 HA LEU ALA 18 58 1.25 16 A A HZ2 O LYS LEU 20 90 1.59 18 A A HA2 HD2 GLY PRO 26 54 1.34 18 A A HZ2 OE2 LYS GLU 84 88 1.59 19 A A OD1 HE ASP ARG 61 63 1.60 21 A A HG3 HD3 LYS PRO 9 10 1.33 22 A A HG11 HG23 VAL THR 73 89 1.24 22 A A O H ALA ASP 57 61 1.60 23 A A HG23 HB2 ILE GLU 52 59 1.22 23 A A HA HB3 PRO LYS 10 103 1.28 23 A A HD21 HA LEU ALA 18 58 1.31 24 A A HG12 HG22 VAL THR 73 89 1.19 25 A A HB HB2 THR LYS 30 50 1.28 26 A A HB2 H PRO LYS 54 55 1.28 26 A A HD21 HA LEU ALA 18 58 1.34 28 A A HG11 HG23 VAL THR 73 89 1.16 29 A A HG12 HG23 VAL THR 73 89 1.17 30 A A HB HB ILE VAL 47 70 1.31 5 A ARG 69 0.083 SIDE CHAIN 5 A ARG 91 0.084 SIDE CHAIN 6 A ARG 63 0.076 SIDE CHAIN 23 A ARG 63 0.074 SIDE CHAIN 24 A ARG 43 0.071 SIDE CHAIN 26 A ARG 91 0.094 SIDE CHAIN 29 A ARG 63 0.092 SIDE CHAIN 1 A ASP 22 -164.84 -68.80 1 A SER 24 62.01 -170.34 1 A LEU 32 -170.82 124.19 1 A ASP 34 -62.55 99.36 1 A ASN 39 -166.17 -30.93 1 A PRO 54 -17.25 -110.19 1 A LYS 55 70.69 -67.06 1 A ALA 57 59.04 -110.29 1 A LYS 66 -79.76 43.35 2 A VAL 31 -94.04 -63.64 2 A HIS 44 77.30 132.38 2 A PRO 54 -56.40 -152.97 2 A LYS 55 72.80 -44.97 2 A ALA 57 71.27 -99.48 2 A THR 93 -67.18 -177.81 2 A VAL 106 44.06 87.86 3 A THR 21 -90.36 -84.00 3 A SER 24 76.69 -109.94 3 A PHE 33 -166.88 13.89 3 A ASP 34 -75.13 -80.58 3 A LYS 35 -169.89 115.84 3 A ASN 39 70.05 164.78 3 A SER 41 -59.85 -90.22 3 A HIS 44 53.63 -102.14 3 A PRO 54 -59.47 -77.38 3 A ALA 57 167.25 -71.31 3 A ARG 63 -128.70 -58.87 4 A PRO 10 -70.10 44.38 4 A ASP 22 -105.75 -72.01 4 A LYS 35 -170.94 -50.41 4 A VAL 38 -78.80 -84.00 4 A ASN 39 -122.13 -69.37 4 A HIS 44 -151.25 -81.55 4 A PRO 54 -65.25 78.55 4 A ALA 57 69.79 -103.48 4 A VAL 106 52.02 80.00 5 A ASP 22 -111.65 -154.84 5 A ASP 34 -68.11 90.83 5 A ALA 57 37.66 -86.02 6 A ASP 22 -170.20 -50.35 6 A SER 24 69.10 -160.15 6 A ALA 57 75.98 -86.71 6 A ARG 63 -136.43 -39.19 7 A SER 24 72.40 -153.73 7 A VAL 38 -107.36 -63.72 7 A ASN 39 63.39 -77.08 7 A THR 40 165.84 -20.54 7 A SER 41 -80.46 33.25 7 A ARG 43 -114.09 75.08 7 A ILE 53 -103.30 -89.38 7 A LYS 55 78.09 -63.62 7 A ALA 57 68.51 -83.11 7 A ASN 74 39.40 42.37 8 A PRO 10 -71.28 45.77 8 A ASP 22 177.15 -24.51 8 A SER 24 68.00 -166.29 8 A VAL 29 -109.77 -165.74 8 A ASN 39 78.69 129.82 8 A VAL 49 -56.46 108.06 8 A PRO 54 -52.67 52.16 8 A ALA 57 67.73 -90.50 8 A ASN 74 48.27 29.91 8 A THR 93 -58.50 -74.85 9 A LYS 20 -68.04 90.82 9 A ASP 22 -162.78 -68.21 9 A SER 24 79.01 -159.12 9 A ASP 34 -165.28 -41.78 9 A HIS 44 69.39 162.65 9 A PRO 54 -67.66 63.53 9 A LYS 55 -130.25 -55.76 9 A ALA 57 71.26 -95.97 9 A ARG 63 -121.65 -60.94 9 A VAL 106 63.47 125.96 10 A PRO 10 -68.91 42.48 10 A ASP 22 -155.47 -152.67 10 A ALA 57 67.51 -93.53 10 A ASN 74 39.43 70.58 10 A GLN 105 -111.85 -150.03 11 A ASP 22 -103.64 -79.21 11 A PHE 33 -124.41 -50.42 11 A PRO 54 -69.19 -102.54 11 A LYS 55 67.86 -59.48 11 A ALA 57 -135.59 -98.39 12 A ASP 22 -152.65 -48.49 12 A SER 24 71.64 -132.23 12 A LEU 32 -169.89 -57.15 12 A PHE 33 179.71 165.66 12 A LYS 35 -94.40 -69.92 12 A ASN 39 67.38 92.65 12 A LYS 55 -162.59 64.44 12 A ALA 57 176.65 -68.13 12 A ARG 63 -157.98 -47.00 12 A LEU 78 -97.63 33.12 12 A GLN 105 -161.31 -167.33 13 A PRO 10 -75.01 40.49 13 A THR 21 -90.18 -61.39 13 A ASP 22 -152.88 -45.65 13 A SER 24 80.45 -147.67 13 A ASP 34 -76.13 26.46 13 A THR 40 -127.56 -115.20 13 A PRO 54 -69.16 80.26 13 A LYS 55 -143.30 -42.93 13 A ALA 57 67.67 -102.68 14 A THR 21 -82.30 -71.74 14 A ASP 22 -156.61 -36.27 14 A SER 24 65.97 -142.31 14 A PHE 33 -147.58 -0.31 14 A ASN 39 75.96 -31.39 14 A SER 41 -77.22 -78.56 14 A ARG 63 -132.64 -75.65 15 A PRO 10 -68.34 42.78 15 A ASP 22 65.85 -65.81 15 A SER 24 70.34 -173.73 15 A ASN 39 -143.51 -64.58 15 A THR 40 68.33 127.86 15 A PRO 54 -56.88 -133.36 15 A LYS 55 75.30 -52.23 15 A ALA 57 -8.97 -75.83 15 A ARG 63 -154.32 2.65 15 A ALA 81 -93.17 -154.48 15 A GLN 105 -157.65 -57.76 16 A THR 21 -88.52 33.10 16 A ASP 22 67.99 -28.82 16 A PRO 54 -59.94 88.83 16 A ALA 57 -122.26 -77.77 16 A ARG 63 -156.24 -1.54 16 A LYS 103 -50.02 106.46 17 A PRO 10 -87.18 34.86 17 A ASP 22 -173.05 -65.01 17 A SER 24 69.48 -168.11 17 A PHE 33 -161.82 108.37 17 A SER 41 -162.17 94.48 17 A ARG 43 -134.43 -58.09 17 A PRO 54 -52.40 -158.32 17 A LYS 55 76.53 -51.44 17 A ALA 57 70.05 -91.13 17 A LEU 78 -110.52 76.32 18 A SER 24 77.43 -168.59 18 A LEU 25 -66.17 -76.81 18 A PHE 33 -137.49 -34.73 18 A ILE 53 -108.43 -71.06 18 A PRO 54 -60.18 -163.35 18 A ALA 57 66.08 -92.34 18 A GLU 79 -62.90 97.89 19 A ASP 22 -174.74 -35.85 19 A SER 24 58.93 -152.99 19 A VAL 38 -67.13 -79.97 19 A ALA 57 -178.23 -69.08 19 A ARG 63 -121.60 -73.41 19 A ASN 74 35.26 46.39 19 A GLU 79 -69.04 95.18 20 A ASP 22 77.93 -35.67 20 A LEU 32 -171.85 132.85 20 A ASN 39 -128.30 -70.36 20 A PRO 54 -69.35 60.12 20 A ALA 57 73.71 -91.05 20 A HIS 98 -101.19 52.95 21 A ASP 22 67.64 -61.45 21 A SER 24 64.48 -155.43 21 A LYS 35 -163.19 -48.30 21 A ASN 39 173.81 -53.71 21 A ALA 57 -132.15 -65.10 21 A ARG 63 -147.79 -23.10 22 A THR 21 -112.48 -158.78 22 A SER 24 70.28 -143.90 22 A LEU 32 -164.48 -21.08 22 A VAL 42 -142.00 33.51 22 A LYS 55 67.80 -0.35 22 A ALA 57 26.49 -76.26 22 A ARG 63 -115.87 -74.61 22 A HIS 98 -115.75 70.08 23 A THR 21 -92.28 -78.95 23 A ASP 22 -126.38 -56.32 23 A SER 24 66.19 -105.97 23 A ASP 34 -174.81 142.12 23 A LYS 35 -144.34 13.73 23 A ASN 39 -169.71 34.33 23 A ILE 53 -84.50 -71.91 23 A PRO 54 -78.74 -160.87 23 A ALA 57 68.53 -85.28 23 A ARG 63 -157.84 3.94 24 A ASP 22 -111.11 -145.77 24 A LEU 32 -172.21 146.40 24 A PHE 33 -156.80 -76.51 24 A VAL 42 -160.85 108.37 24 A HIS 44 75.55 101.63 24 A LYS 55 -116.59 -82.30 24 A ALA 57 -126.36 -96.40 24 A ARG 63 -120.50 -69.81 25 A ASP 22 73.06 -49.44 25 A PHE 33 -142.02 -49.91 25 A SER 41 -164.11 -49.05 25 A LYS 55 92.74 5.35 25 A ALA 57 71.66 -114.04 26 A ASP 22 -163.05 -49.45 26 A ASN 39 -166.13 -50.08 26 A HIS 44 74.31 95.64 26 A PRO 54 -65.59 -86.60 26 A LYS 55 65.04 -67.51 26 A ALA 57 -134.52 -99.39 26 A LEU 78 -87.74 40.54 27 A ASP 22 79.76 -40.37 27 A SER 24 -162.65 -162.17 27 A SER 41 -157.23 85.67 27 A LYS 55 69.74 -4.99 27 A ALA 57 58.82 -75.41 27 A VAL 106 52.84 84.99 28 A ASP 22 -112.13 -155.85 28 A VAL 38 -110.11 -73.92 28 A ASN 39 -139.26 -58.43 28 A ALA 57 -117.94 -87.92 29 A PRO 10 -68.66 66.00 29 A SER 24 74.90 -176.63 29 A VAL 38 -93.76 53.55 29 A PRO 54 -69.12 -155.75 29 A LYS 55 97.36 -44.60 29 A ALA 57 -129.51 -105.80 29 A ARG 63 -108.99 -62.34 29 A THR 93 -75.94 -77.59 30 A ASP 22 62.05 -73.51 30 A SER 24 62.68 -98.45 30 A LEU 32 -170.86 -54.06 30 A VAL 49 -51.25 109.46 30 A ALA 57 32.56 -72.45 30 A ARG 63 -121.53 -87.02 30 A ASN 74 38.44 63.40 The alternatively spliced PDZ2 domain of PTP-BL 1 N N A GLY 56 A GLY 48 HELX_P A GLY 62 A GLY 54 1 1 7 A THR 82 A THR 74 HELX_P A THR 93 A THR 85 1 2 12 HYDROLASE all-beta protein, PDZ domain, interaction with C-termini, APC, Adenomatous Polyposis Coli, RIL, reversion induced LIM, HYDROLASE PTN13_MOUSE UNP 1 1351 Q64512 KPGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT GQVVHLLLEKGQVP 1351 1444 1OZI 9 107 Q64512 A 1 1 99 1 insertion VAL 31 1OZI A Q64512 UNP 23 1 insertion LEU 32 1OZI A Q64512 UNP 24 1 insertion PHE 33 1OZI A Q64512 UNP 25 1 insertion ASP 34 1OZI A Q64512 UNP 26 1 insertion LYS 35 1OZI A Q64512 UNP 27 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 13 A THR 5 A ALA 19 A ALA 11 A VAL 96 A VAL 88 A GLU 102 A GLU 94 A ARG 69 A ARG 61 A VAL 73 A VAL 65 A ILE 47 A ILE 39 A ILE 52 A ILE 44 A ILE 27 A ILE 19 A THR 30 A THR 22 A THR 13 A THR 5 A ALA 19 A ALA 11 A VAL 96 A VAL 88 A GLU 102 A GLU 94 A ARG 69 A ARG 61 A VAL 73 A VAL 65 A VAL 76 A VAL 68 A SER 77 A SER 69 1 P 1