0.031050
-0.012570
-0.007857
0.000000
0.031810
0.000161
0.000000
0.000000
0.017121
0.00000
0.00000
0.00000
He, X.
Bazan, J.F.
Park, J.B.
McDermott, G.
He, Z.
Garcia, K.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
85.02
75.91
67.96
32.206
33.915
60.221
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-alpha-D-glucopyranose
D-saccharide, alpha linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Neuron
NERNET
2038
0896-6273
38
177
185
10.1016/S0896-6273(03)00232-0
12718853
Structure of the Nogo Receptor Ectodomain. A Recognition module implicated in Myelin Inhibition.
2003
NAG B 1 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-12-20
ADSC QUANTUM 4
MAD
M
x-ray
1
1.0064
1.0
1.0096
1.0
0.9950
1.0
8.2.1
ALS
1.0064, 1.0096, 0.9950
SYNCHROTRON
ALS BEAMLINE 8.2.1
31613.375
Reticulon 4 receptor
Ligand Binding Domain
1
man
polymer
748.682
alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
586.542
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
60.052
ACETIC ACID
3
syn
non-polymer
18.015
water
354
nat
water
Nogo receptor, NgR, Nogo-66 receptor
no
no
PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA
LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL
HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD
CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA
PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA
LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL
HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD
CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
cabbage looper
Trichoplusia
sample
RTN4R OR NOGOR
9606
Homo sapiens
7111
Trichoplusia ni
Hi5
baculovirus
pAcGP67A
1
1.87
34.21
VAPOR DIFFUSION, SITTING DROP
6
PEG4000, sodium chloride, sodium acetate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2003-05-20
1
1
2008-04-29
1
2
2011-07-13
2
0
2020-07-29
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
Y
NAG
1
n
B
NAG
1
Y
NAG
2
n
B
NDG
2
Y
MAN
3
n
B
MAN
3
Y
MAN
4
n
B
MAN
4
Z
NAG
1
n
C
NAG
1
Z
NAG
2
n
C
NDG
2
Z
MAN
3
n
C
BMA
3
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DGlcpNAca
N-acetyl-a-D-glucopyranosamine
a-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2003-04-09
REL
oligosaccharide
oligosaccharide
DManpa1-6DManpa1-4DGlcpNAca1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-2-3-3/a4-b1_b4-c1_c6-d1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(6+1)][a-D-Manp]{}}}}}
2
PDB-CARE
LINUCS
DManpb1-4DGlcpNAca1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-2-3/a4-b1_b4-c1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}
3
PDB-CARE
LINUCS
C1
O4
NDG
NAG
2
1
2
O1
HO4
sing
C1
O4
MAN
NDG
3
2
2
O1
HO4
sing
C1
O6
MAN
MAN
4
3
2
O1
HO6
sing
C1
O4
NDG
NAG
2
1
3
O1
HO4
sing
C1
O4
BMA
NDG
3
2
3
O1
HO4
sing
n
n
n
n
n
n
n
ACY
ACETIC ACID
HOH
water
ACY
1
4
ACY
ACY
1
A
ACY
2
4
ACY
ACY
2
A
ACY
3
4
ACY
ACY
3
A
TIP
4
5
HOH
HOH
408
A
TIP
5
5
HOH
HOH
409
A
TIP
6
5
HOH
HOH
410
A
TIP
7
5
HOH
HOH
411
A
TIP
8
5
HOH
HOH
412
A
TIP
9
5
HOH
HOH
413
A
TIP
10
5
HOH
HOH
414
A
TIP
11
5
HOH
HOH
415
A
TIP
12
5
HOH
HOH
416
A
TIP
13
5
HOH
HOH
417
A
TIP
14
5
HOH
HOH
418
A
TIP
15
5
HOH
HOH
419
A
TIP
16
5
HOH
HOH
420
A
TIP
17
5
HOH
HOH
421
A
TIP
18
5
HOH
HOH
422
A
TIP
19
5
HOH
HOH
423
A
TIP
20
5
HOH
HOH
424
A
TIP
21
5
HOH
HOH
425
A
TIP
22
5
HOH
HOH
426
A
TIP
23
5
HOH
HOH
427
A
TIP
24
5
HOH
HOH
428
A
TIP
25
5
HOH
HOH
429
A
TIP
26
5
HOH
HOH
430
A
TIP
27
5
HOH
HOH
431
A
TIP
28
5
HOH
HOH
432
A
TIP
29
5
HOH
HOH
433
A
TIP
30
5
HOH
HOH
434
A
TIP
31
5
HOH
HOH
435
A
TIP
32
5
HOH
HOH
436
A
TIP
33
5
HOH
HOH
437
A
TIP
34
5
HOH
HOH
438
A
TIP
35
5
HOH
HOH
439
A
TIP
36
5
HOH
HOH
440
A
TIP
37
5
HOH
HOH
441
A
TIP
38
5
HOH
HOH
442
A
TIP
39
5
HOH
HOH
443
A
TIP
40
5
HOH
HOH
444
A
TIP
41
5
HOH
HOH
445
A
TIP
42
5
HOH
HOH
446
A
TIP
43
5
HOH
HOH
447
A
TIP
44
5
HOH
HOH
448
A
TIP
45
5
HOH
HOH
449
A
TIP
46
5
HOH
HOH
450
A
TIP
47
5
HOH
HOH
451
A
TIP
48
5
HOH
HOH
452
A
TIP
49
5
HOH
HOH
453
A
TIP
50
5
HOH
HOH
454
A
TIP
51
5
HOH
HOH
455
A
TIP
52
5
HOH
HOH
456
A
TIP
53
5
HOH
HOH
457
A
TIP
54
5
HOH
HOH
458
A
TIP
55
5
HOH
HOH
459
A
TIP
56
5
HOH
HOH
460
A
TIP
57
5
HOH
HOH
461
A
TIP
58
5
HOH
HOH
462
A
TIP
59
5
HOH
HOH
463
A
TIP
60
5
HOH
HOH
464
A
TIP
61
5
HOH
HOH
465
A
TIP
62
5
HOH
HOH
466
A
TIP
63
5
HOH
HOH
467
A
TIP
64
5
HOH
HOH
468
A
TIP
65
5
HOH
HOH
469
A
TIP
66
5
HOH
HOH
470
A
TIP
67
5
HOH
HOH
471
A
TIP
68
5
HOH
HOH
472
A
TIP
69
5
HOH
HOH
473
A
TIP
70
5
HOH
HOH
474
A
TIP
71
5
HOH
HOH
475
A
TIP
72
5
HOH
HOH
476
A
TIP
73
5
HOH
HOH
477
A
TIP
74
5
HOH
HOH
478
A
TIP
75
5
HOH
HOH
479
A
TIP
76
5
HOH
HOH
480
A
TIP
77
5
HOH
HOH
481
A
TIP
78
5
HOH
HOH
482
A
TIP
79
5
HOH
HOH
483
A
TIP
80
5
HOH
HOH
484
A
TIP
81
5
HOH
HOH
485
A
TIP
82
5
HOH
HOH
486
A
TIP
83
5
HOH
HOH
487
A
TIP
84
5
HOH
HOH
488
A
TIP
85
5
HOH
HOH
489
A
TIP
86
5
HOH
HOH
490
A
TIP
87
5
HOH
HOH
491
A
TIP
88
5
HOH
HOH
492
A
TIP
89
5
HOH
HOH
493
A
TIP
90
5
HOH
HOH
494
A
TIP
91
5
HOH
HOH
495
A
TIP
92
5
HOH
HOH
496
A
TIP
93
5
HOH
HOH
497
A
TIP
94
5
HOH
HOH
498
A
TIP
95
5
HOH
HOH
499
A
TIP
96
5
HOH
HOH
500
A
TIP
97
5
HOH
HOH
501
A
TIP
98
5
HOH
HOH
502
A
TIP
99
5
HOH
HOH
503
A
TIP
100
5
HOH
HOH
504
A
TIP
101
5
HOH
HOH
505
A
TIP
102
5
HOH
HOH
506
A
TIP
103
5
HOH
HOH
507
A
TIP
104
5
HOH
HOH
508
A
TIP
105
5
HOH
HOH
509
A
TIP
106
5
HOH
HOH
510
A
TIP
107
5
HOH
HOH
511
A
TIP
108
5
HOH
HOH
512
A
TIP
109
5
HOH
HOH
513
A
TIP
110
5
HOH
HOH
514
A
TIP
111
5
HOH
HOH
515
A
TIP
112
5
HOH
HOH
516
A
TIP
113
5
HOH
HOH
517
A
TIP
114
5
HOH
HOH
518
A
TIP
115
5
HOH
HOH
519
A
TIP
116
5
HOH
HOH
520
A
TIP
117
5
HOH
HOH
521
A
TIP
118
5
HOH
HOH
522
A
TIP
119
5
HOH
HOH
523
A
TIP
120
5
HOH
HOH
524
A
TIP
121
5
HOH
HOH
525
A
TIP
122
5
HOH
HOH
526
A
TIP
123
5
HOH
HOH
527
A
TIP
124
5
HOH
HOH
528
A
TIP
125
5
HOH
HOH
529
A
TIP
126
5
HOH
HOH
530
A
TIP
127
5
HOH
HOH
531
A
TIP
128
5
HOH
HOH
532
A
TIP
129
5
HOH
HOH
533
A
TIP
130
5
HOH
HOH
534
A
TIP
131
5
HOH
HOH
535
A
TIP
132
5
HOH
HOH
536
A
TIP
133
5
HOH
HOH
537
A
TIP
134
5
HOH
HOH
538
A
TIP
135
5
HOH
HOH
539
A
TIP
136
5
HOH
HOH
540
A
TIP
137
5
HOH
HOH
541
A
TIP
138
5
HOH
HOH
542
A
TIP
139
5
HOH
HOH
543
A
TIP
140
5
HOH
HOH
544
A
TIP
141
5
HOH
HOH
545
A
TIP
142
5
HOH
HOH
546
A
TIP
143
5
HOH
HOH
547
A
TIP
144
5
HOH
HOH
548
A
TIP
145
5
HOH
HOH
549
A
TIP
146
5
HOH
HOH
550
A
TIP
147
5
HOH
HOH
551
A
TIP
148
5
HOH
HOH
552
A
TIP
149
5
HOH
HOH
553
A
TIP
150
5
HOH
HOH
554
A
TIP
151
5
HOH
HOH
555
A
TIP
152
5
HOH
HOH
556
A
TIP
153
5
HOH
HOH
557
A
TIP
154
5
HOH
HOH
558
A
TIP
155
5
HOH
HOH
559
A
TIP
156
5
HOH
HOH
560
A
TIP
157
5
HOH
HOH
561
A
TIP
158
5
HOH
HOH
562
A
TIP
159
5
HOH
HOH
563
A
TIP
160
5
HOH
HOH
564
A
TIP
161
5
HOH
HOH
565
A
TIP
162
5
HOH
HOH
566
A
TIP
163
5
HOH
HOH
567
A
TIP
164
5
HOH
HOH
568
A
TIP
165
5
HOH
HOH
569
A
TIP
166
5
HOH
HOH
570
A
TIP
167
5
HOH
HOH
571
A
TIP
168
5
HOH
HOH
572
A
TIP
169
5
HOH
HOH
573
A
TIP
170
5
HOH
HOH
574
A
TIP
171
5
HOH
HOH
575
A
TIP
172
5
HOH
HOH
576
A
TIP
173
5
HOH
HOH
577
A
TIP
174
5
HOH
HOH
578
A
TIP
175
5
HOH
HOH
579
A
TIP
176
5
HOH
HOH
580
A
TIP
177
5
HOH
HOH
581
A
TIP
178
5
HOH
HOH
582
A
TIP
179
5
HOH
HOH
583
A
TIP
180
5
HOH
HOH
584
A
TIP
181
5
HOH
HOH
585
A
TIP
182
5
HOH
HOH
586
A
TIP
183
5
HOH
HOH
587
A
TIP
184
5
HOH
HOH
588
A
TIP
185
5
HOH
HOH
589
A
TIP
186
5
HOH
HOH
590
A
TIP
187
5
HOH
HOH
591
A
TIP
188
5
HOH
HOH
592
A
TIP
189
5
HOH
HOH
593
A
TIP
190
5
HOH
HOH
594
A
TIP
191
5
HOH
HOH
595
A
TIP
192
5
HOH
HOH
596
A
TIP
193
5
HOH
HOH
597
A
TIP
194
5
HOH
HOH
598
A
TIP
195
5
HOH
HOH
599
A
TIP
196
5
HOH
HOH
600
A
TIP
197
5
HOH
HOH
601
A
TIP
198
5
HOH
HOH
602
A
TIP
199
5
HOH
HOH
603
A
TIP
200
5
HOH
HOH
604
A
TIP
201
5
HOH
HOH
605
A
TIP
202
5
HOH
HOH
606
A
TIP
203
5
HOH
HOH
607
A
TIP
204
5
HOH
HOH
608
A
TIP
205
5
HOH
HOH
609
A
TIP
206
5
HOH
HOH
610
A
TIP
207
5
HOH
HOH
611
A
TIP
208
5
HOH
HOH
612
A
TIP
209
5
HOH
HOH
613
A
TIP
210
5
HOH
HOH
614
A
TIP
211
5
HOH
HOH
615
A
TIP
212
5
HOH
HOH
616
A
TIP
213
5
HOH
HOH
617
A
TIP
214
5
HOH
HOH
618
A
TIP
215
5
HOH
HOH
619
A
TIP
216
5
HOH
HOH
620
A
TIP
217
5
HOH
HOH
621
A
TIP
218
5
HOH
HOH
622
A
TIP
219
5
HOH
HOH
623
A
TIP
220
5
HOH
HOH
624
A
TIP
221
5
HOH
HOH
625
A
TIP
222
5
HOH
HOH
626
A
TIP
223
5
HOH
HOH
627
A
TIP
224
5
HOH
HOH
628
A
TIP
225
5
HOH
HOH
629
A
TIP
226
5
HOH
HOH
630
A
TIP
227
5
HOH
HOH
631
A
TIP
228
5
HOH
HOH
632
A
TIP
229
5
HOH
HOH
633
A
TIP
230
5
HOH
HOH
634
A
TIP
231
5
HOH
HOH
635
A
TIP
232
5
HOH
HOH
636
A
TIP
233
5
HOH
HOH
637
A
TIP
234
5
HOH
HOH
638
A
TIP
235
5
HOH
HOH
639
A
TIP
236
5
HOH
HOH
640
A
TIP
237
5
HOH
HOH
641
A
TIP
238
5
HOH
HOH
642
A
TIP
239
5
HOH
HOH
643
A
TIP
240
5
HOH
HOH
644
A
TIP
241
5
HOH
HOH
645
A
TIP
242
5
HOH
HOH
646
A
TIP
243
5
HOH
HOH
647
A
TIP
244
5
HOH
HOH
648
A
TIP
245
5
HOH
HOH
649
A
TIP
246
5
HOH
HOH
650
A
TIP
247
5
HOH
HOH
651
A
TIP
248
5
HOH
HOH
652
A
TIP
249
5
HOH
HOH
653
A
TIP
250
5
HOH
HOH
654
A
TIP
251
5
HOH
HOH
655
A
TIP
252
5
HOH
HOH
656
A
TIP
253
5
HOH
HOH
657
A
TIP
254
5
HOH
HOH
658
A
TIP
255
5
HOH
HOH
659
A
TIP
256
5
HOH
HOH
660
A
TIP
257
5
HOH
HOH
661
A
TIP
258
5
HOH
HOH
662
A
TIP
259
5
HOH
HOH
663
A
TIP
260
5
HOH
HOH
664
A
TIP
261
5
HOH
HOH
665
A
TIP
262
5
HOH
HOH
666
A
TIP
263
5
HOH
HOH
667
A
TIP
264
5
HOH
HOH
668
A
TIP
265
5
HOH
HOH
669
A
TIP
266
5
HOH
HOH
670
A
TIP
267
5
HOH
HOH
671
A
TIP
268
5
HOH
HOH
672
A
TIP
269
5
HOH
HOH
673
A
TIP
270
5
HOH
HOH
674
A
TIP
271
5
HOH
HOH
675
A
TIP
272
5
HOH
HOH
676
A
TIP
273
5
HOH
HOH
677
A
TIP
274
5
HOH
HOH
678
A
TIP
275
5
HOH
HOH
679
A
TIP
276
5
HOH
HOH
680
A
TIP
277
5
HOH
HOH
681
A
TIP
278
5
HOH
HOH
682
A
TIP
279
5
HOH
HOH
683
A
TIP
280
5
HOH
HOH
684
A
TIP
281
5
HOH
HOH
685
A
TIP
282
5
HOH
HOH
686
A
TIP
283
5
HOH
HOH
687
A
TIP
284
5
HOH
HOH
688
A
TIP
285
5
HOH
HOH
689
A
TIP
286
5
HOH
HOH
690
A
TIP
287
5
HOH
HOH
691
A
TIP
288
5
HOH
HOH
692
A
TIP
289
5
HOH
HOH
693
A
TIP
290
5
HOH
HOH
694
A
TIP
291
5
HOH
HOH
695
A
TIP
292
5
HOH
HOH
696
A
TIP
293
5
HOH
HOH
697
A
TIP
294
5
HOH
HOH
698
A
TIP
295
5
HOH
HOH
699
A
TIP
296
5
HOH
HOH
700
A
TIP
297
5
HOH
HOH
701
A
TIP
298
5
HOH
HOH
702
A
TIP
299
5
HOH
HOH
703
A
TIP
300
5
HOH
HOH
704
A
TIP
301
5
HOH
HOH
705
A
TIP
302
5
HOH
HOH
706
A
TIP
303
5
HOH
HOH
707
A
TIP
304
5
HOH
HOH
708
A
TIP
305
5
HOH
HOH
709
A
TIP
306
5
HOH
HOH
710
A
TIP
307
5
HOH
HOH
711
A
TIP
308
5
HOH
HOH
712
A
TIP
309
5
HOH
HOH
713
A
TIP
310
5
HOH
HOH
714
A
TIP
311
5
HOH
HOH
715
A
TIP
312
5
HOH
HOH
716
A
TIP
313
5
HOH
HOH
717
A
TIP
314
5
HOH
HOH
718
A
TIP
315
5
HOH
HOH
719
A
TIP
316
5
HOH
HOH
720
A
TIP
317
5
HOH
HOH
721
A
TIP
318
5
HOH
HOH
722
A
TIP
319
5
HOH
HOH
723
A
TIP
320
5
HOH
HOH
724
A
TIP
321
5
HOH
HOH
725
A
TIP
322
5
HOH
HOH
726
A
TIP
323
5
HOH
HOH
727
A
TIP
324
5
HOH
HOH
728
A
TIP
325
5
HOH
HOH
729
A
TIP
326
5
HOH
HOH
730
A
TIP
327
5
HOH
HOH
731
A
TIP
328
5
HOH
HOH
732
A
TIP
329
5
HOH
HOH
733
A
TIP
330
5
HOH
HOH
734
A
TIP
331
5
HOH
HOH
735
A
TIP
332
5
HOH
HOH
736
A
TIP
333
5
HOH
HOH
737
A
TIP
334
5
HOH
HOH
738
A
TIP
335
5
HOH
HOH
739
A
TIP
336
5
HOH
HOH
740
A
TIP
337
5
HOH
HOH
741
A
TIP
338
5
HOH
HOH
742
A
TIP
339
5
HOH
HOH
743
A
TIP
340
5
HOH
HOH
744
A
TIP
341
5
HOH
HOH
745
A
TIP
342
5
HOH
HOH
746
A
TIP
343
5
HOH
HOH
747
A
TIP
344
5
HOH
HOH
748
A
TIP
345
5
HOH
HOH
749
A
TIP
346
5
HOH
HOH
750
A
TIP
347
5
HOH
HOH
751
A
TIP
348
5
HOH
HOH
752
A
TIP
349
5
HOH
HOH
753
A
TIP
350
5
HOH
HOH
754
A
TIP
351
5
HOH
HOH
755
A
TIP
352
5
HOH
HOH
756
A
TIP
353
5
HOH
HOH
757
A
TIP
354
5
HOH
HOH
758
A
TIP
355
5
HOH
HOH
759
A
TIP
356
5
HOH
HOH
760
A
TIP
357
5
HOH
HOH
761
A
PRO
26
n
1
PRO
26
A
CYS
27
n
2
CYS
27
A
PRO
28
n
3
PRO
28
A
GLY
29
n
4
GLY
29
A
ALA
30
n
5
ALA
30
A
CYS
31
n
6
CYS
31
A
VAL
32
n
7
VAL
32
A
CYS
33
n
8
CYS
33
A
TYR
34
n
9
TYR
34
A
ASN
35
n
10
ASN
35
A
GLU
36
n
11
GLU
36
A
PRO
37
n
12
PRO
37
A
LYS
38
n
13
LYS
38
A
VAL
39
n
14
VAL
39
A
THR
40
n
15
THR
40
A
THR
41
n
16
THR
41
A
SER
42
n
17
SER
42
A
CYS
43
n
18
CYS
43
A
PRO
44
n
19
PRO
44
A
GLN
45
n
20
GLN
45
A
GLN
46
n
21
GLN
46
A
GLY
47
n
22
GLY
47
A
LEU
48
n
23
LEU
48
A
GLN
49
n
24
GLN
49
A
ALA
50
n
25
ALA
50
A
VAL
51
n
26
VAL
51
A
PRO
52
n
27
PRO
52
A
VAL
53
n
28
VAL
53
A
GLY
54
n
29
GLY
54
A
ILE
55
n
30
ILE
55
A
PRO
56
n
31
PRO
56
A
ALA
57
n
32
ALA
57
A
ALA
58
n
33
ALA
58
A
SER
59
n
34
SER
59
A
GLN
60
n
35
GLN
60
A
ARG
61
n
36
ARG
61
A
ILE
62
n
37
ILE
62
A
PHE
63
n
38
PHE
63
A
LEU
64
n
39
LEU
64
A
HIS
65
n
40
HIS
65
A
GLY
66
n
41
GLY
66
A
ASN
67
n
42
ASN
67
A
ARG
68
n
43
ARG
68
A
ILE
69
n
44
ILE
69
A
SER
70
n
45
SER
70
A
HIS
71
n
46
HIS
71
A
VAL
72
n
47
VAL
72
A
PRO
73
n
48
PRO
73
A
ALA
74
n
49
ALA
74
A
ALA
75
n
50
ALA
75
A
SER
76
n
51
SER
76
A
PHE
77
n
52
PHE
77
A
ARG
78
n
53
ARG
78
A
ALA
79
n
54
ALA
79
A
CYS
80
n
55
CYS
80
A
ARG
81
n
56
ARG
81
A
ASN
82
n
57
ASN
82
A
LEU
83
n
58
LEU
83
A
THR
84
n
59
THR
84
A
ILE
85
n
60
ILE
85
A
LEU
86
n
61
LEU
86
A
TRP
87
n
62
TRP
87
A
LEU
88
n
63
LEU
88
A
HIS
89
n
64
HIS
89
A
SER
90
n
65
SER
90
A
ASN
91
n
66
ASN
91
A
VAL
92
n
67
VAL
92
A
LEU
93
n
68
LEU
93
A
ALA
94
n
69
ALA
94
A
ARG
95
n
70
ARG
95
A
ILE
96
n
71
ILE
96
A
ASP
97
n
72
ASP
97
A
ALA
98
n
73
ALA
98
A
ALA
99
n
74
ALA
99
A
ALA
100
n
75
ALA
100
A
PHE
101
n
76
PHE
101
A
THR
102
n
77
THR
102
A
GLY
103
n
78
GLY
103
A
LEU
104
n
79
LEU
104
A
ALA
105
n
80
ALA
105
A
LEU
106
n
81
LEU
106
A
LEU
107
n
82
LEU
107
A
GLU
108
n
83
GLU
108
A
GLN
109
n
84
GLN
109
A
LEU
110
n
85
LEU
110
A
ASP
111
n
86
ASP
111
A
LEU
112
n
87
LEU
112
A
SER
113
n
88
SER
113
A
ASP
114
n
89
ASP
114
A
ASN
115
n
90
ASN
115
A
ALA
116
n
91
ALA
116
A
GLN
117
n
92
GLN
117
A
LEU
118
n
93
LEU
118
A
ARG
119
n
94
ARG
119
A
SER
120
n
95
SER
120
A
VAL
121
n
96
VAL
121
A
ASP
122
n
97
ASP
122
A
PRO
123
n
98
PRO
123
A
ALA
124
n
99
ALA
124
A
THR
125
n
100
THR
125
A
PHE
126
n
101
PHE
126
A
HIS
127
n
102
HIS
127
A
GLY
128
n
103
GLY
128
A
LEU
129
n
104
LEU
129
A
GLY
130
n
105
GLY
130
A
ARG
131
n
106
ARG
131
A
LEU
132
n
107
LEU
132
A
HIS
133
n
108
HIS
133
A
THR
134
n
109
THR
134
A
LEU
135
n
110
LEU
135
A
HIS
136
n
111
HIS
136
A
LEU
137
n
112
LEU
137
A
ASP
138
n
113
ASP
138
A
ARG
139
n
114
ARG
139
A
CYS
140
n
115
CYS
140
A
GLY
141
n
116
GLY
141
A
LEU
142
n
117
LEU
142
A
GLN
143
n
118
GLN
143
A
GLU
144
n
119
GLU
144
A
LEU
145
n
120
LEU
145
A
GLY
146
n
121
GLY
146
A
PRO
147
n
122
PRO
147
A
GLY
148
n
123
GLY
148
A
LEU
149
n
124
LEU
149
A
PHE
150
n
125
PHE
150
A
ARG
151
n
126
ARG
151
A
GLY
152
n
127
GLY
152
A
LEU
153
n
128
LEU
153
A
ALA
154
n
129
ALA
154
A
ALA
155
n
130
ALA
155
A
LEU
156
n
131
LEU
156
A
GLN
157
n
132
GLN
157
A
TYR
158
n
133
TYR
158
A
LEU
159
n
134
LEU
159
A
TYR
160
n
135
TYR
160
A
LEU
161
n
136
LEU
161
A
GLN
162
n
137
GLN
162
A
ASP
163
n
138
ASP
163
A
ASN
164
n
139
ASN
164
A
ALA
165
n
140
ALA
165
A
LEU
166
n
141
LEU
166
A
GLN
167
n
142
GLN
167
A
ALA
168
n
143
ALA
168
A
LEU
169
n
144
LEU
169
A
PRO
170
n
145
PRO
170
A
ASP
171
n
146
ASP
171
A
ASP
172
n
147
ASP
172
A
THR
173
n
148
THR
173
A
PHE
174
n
149
PHE
174
A
ARG
175
n
150
ARG
175
A
ASP
176
n
151
ASP
176
A
LEU
177
n
152
LEU
177
A
GLY
178
n
153
GLY
178
A
ASN
179
n
154
ASN
179
A
LEU
180
n
155
LEU
180
A
THR
181
n
156
THR
181
A
HIS
182
n
157
HIS
182
A
LEU
183
n
158
LEU
183
A
PHE
184
n
159
PHE
184
A
LEU
185
n
160
LEU
185
A
HIS
186
n
161
HIS
186
A
GLY
187
n
162
GLY
187
A
ASN
188
n
163
ASN
188
A
ARG
189
n
164
ARG
189
A
ILE
190
n
165
ILE
190
A
SER
191
n
166
SER
191
A
SER
192
n
167
SER
192
A
VAL
193
n
168
VAL
193
A
PRO
194
n
169
PRO
194
A
GLU
195
n
170
GLU
195
A
ARG
196
n
171
ARG
196
A
ALA
197
n
172
ALA
197
A
PHE
198
n
173
PHE
198
A
ARG
199
n
174
ARG
199
A
GLY
200
n
175
GLY
200
A
LEU
201
n
176
LEU
201
A
HIS
202
n
177
HIS
202
A
SER
203
n
178
SER
203
A
LEU
204
n
179
LEU
204
A
ASP
205
n
180
ASP
205
A
ARG
206
n
181
ARG
206
A
LEU
207
n
182
LEU
207
A
LEU
208
n
183
LEU
208
A
LEU
209
n
184
LEU
209
A
HIS
210
n
185
HIS
210
A
GLN
211
n
186
GLN
211
A
ASN
212
n
187
ASN
212
A
ARG
213
n
188
ARG
213
A
VAL
214
n
189
VAL
214
A
ALA
215
n
190
ALA
215
A
HIS
216
n
191
HIS
216
A
VAL
217
n
192
VAL
217
A
HIS
218
n
193
HIS
218
A
PRO
219
n
194
PRO
219
A
HIS
220
n
195
HIS
220
A
ALA
221
n
196
ALA
221
A
PHE
222
n
197
PHE
222
A
ARG
223
n
198
ARG
223
A
ASP
224
n
199
ASP
224
A
LEU
225
n
200
LEU
225
A
GLY
226
n
201
GLY
226
A
ARG
227
n
202
ARG
227
A
LEU
228
n
203
LEU
228
A
MET
229
n
204
MET
229
A
THR
230
n
205
THR
230
A
LEU
231
n
206
LEU
231
A
TYR
232
n
207
TYR
232
A
LEU
233
n
208
LEU
233
A
PHE
234
n
209
PHE
234
A
ALA
235
n
210
ALA
235
A
ASN
236
n
211
ASN
236
A
ASN
237
n
212
ASN
237
A
LEU
238
n
213
LEU
238
A
SER
239
n
214
SER
239
A
ALA
240
n
215
ALA
240
A
LEU
241
n
216
LEU
241
A
PRO
242
n
217
PRO
242
A
THR
243
n
218
THR
243
A
GLU
244
n
219
GLU
244
A
ALA
245
n
220
ALA
245
A
LEU
246
n
221
LEU
246
A
ALA
247
n
222
ALA
247
A
PRO
248
n
223
PRO
248
A
LEU
249
n
224
LEU
249
A
ARG
250
n
225
ARG
250
A
ALA
251
n
226
ALA
251
A
LEU
252
n
227
LEU
252
A
GLN
253
n
228
GLN
253
A
TYR
254
n
229
TYR
254
A
LEU
255
n
230
LEU
255
A
ARG
256
n
231
ARG
256
A
LEU
257
n
232
LEU
257
A
ASN
258
n
233
ASN
258
A
ASP
259
n
234
ASP
259
A
ASN
260
n
235
ASN
260
A
PRO
261
n
236
PRO
261
A
TRP
262
n
237
TRP
262
A
VAL
263
n
238
VAL
263
A
CYS
264
n
239
CYS
264
A
ASP
265
n
240
ASP
265
A
CYS
266
n
241
CYS
266
A
ARG
267
n
242
ARG
267
A
ALA
268
n
243
ALA
268
A
ARG
269
n
244
ARG
269
A
PRO
270
n
245
PRO
270
A
LEU
271
n
246
LEU
271
A
TRP
272
n
247
TRP
272
A
ALA
273
n
248
ALA
273
A
TRP
274
n
249
TRP
274
A
LEU
275
n
250
LEU
275
A
GLN
276
n
251
GLN
276
A
LYS
277
n
252
LYS
277
A
PHE
278
n
253
PHE
278
A
ARG
279
n
254
ARG
279
A
GLY
280
n
255
GLY
280
A
SER
281
n
256
SER
281
A
SER
282
n
257
SER
282
A
SER
283
n
258
SER
283
A
GLU
284
n
259
GLU
284
A
VAL
285
n
260
VAL
285
A
PRO
286
n
261
PRO
286
A
CYS
287
n
262
CYS
287
A
SER
288
n
263
SER
288
A
LEU
289
n
264
LEU
289
A
PRO
290
n
265
PRO
290
A
GLN
291
n
266
GLN
291
A
ARG
292
n
267
ARG
292
A
LEU
293
n
268
LEU
293
A
ALA
294
n
269
ALA
294
A
GLY
295
n
270
GLY
295
A
ARG
296
n
271
ARG
296
A
ASP
297
n
272
ASP
297
A
LEU
298
n
273
LEU
298
A
LYS
299
n
274
LYS
299
A
ARG
300
n
275
ARG
300
A
LEU
301
n
276
LEU
301
A
ALA
302
n
277
ALA
302
A
ALA
303
n
278
ALA
303
A
ASN
304
n
279
ASN
304
A
ASP
305
n
280
ASP
305
A
LEU
306
n
281
LEU
306
A
GLN
307
n
282
GLN
307
A
GLY
308
n
283
GLY
308
A
CYS
309
n
284
CYS
309
A
n
285
310
A
author_defined_assembly
1
monomeric
A
ASN
82
GLYCOSYLATION SITE
A
ASN
57
ASN
A
ASN
179
GLYCOSYLATION SITE
A
ASN
154
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
32
A
N
VAL
7
A
O
SER
42
A
O
SER
17
A
N
THR
41
A
N
THR
16
A
O
ARG
61
A
O
ARG
36
A
N
ILE
62
A
N
ILE
37
A
O
TRP
87
A
O
TRP
62
A
N
LEU
86
A
N
LEU
61
A
O
GLN
109
A
O
GLN
84
A
N
LEU
110
A
N
LEU
85
A
O
HIS
136
A
O
HIS
111
A
N
LEU
135
A
N
LEU
110
A
O
TYR
160
A
O
TYR
135
A
N
LEU
159
A
N
LEU
134
A
O
HIS
182
A
O
HIS
157
A
N
LEU
183
A
N
LEU
158
A
O
ARG
206
A
O
ARG
181
A
N
LEU
207
A
N
LEU
182
A
O
THR
230
A
O
THR
205
A
N
LEU
231
A
N
LEU
206
A
O
TYR
254
A
O
TYR
229
A
N
LEU
255
A
N
LEU
230
A
O
SER
281
A
O
SER
256
A
N
VAL
72
A
N
VAL
47
A
O
ARG
95
A
O
ARG
70
A
N
VAL
193
A
N
VAL
168
A
O
HIS
216
A
O
HIS
191
A
N
TRP
262
A
N
TRP
237
A
O
SER
288
A
O
SER
263
1
A
ALA
310
A
ALA
285
1
Y
1
B
C1
NAG
1
WRONG HAND
1
A
ALA
30
82.85
-4.88
1
A
ASN
67
-108.05
-162.20
1
A
ASN
91
-115.80
-151.78
1
A
LEU
104
-97.53
53.21
1
A
ARG
119
63.49
-40.75
1
A
ASN
164
-115.09
-151.17
1
A
ASP
172
59.47
19.47
1
A
ASN
188
-120.05
-163.68
1
A
ASN
212
-126.81
-154.98
1
A
LEU
225
-91.20
54.23
1
A
ASP
265
-119.12
-149.07
19.5
0.90
-3.31
-1.55
1.51
1.90
-2.42
0.198
0.167
0.168
0.168
1.52
50
1634
32883
32883
RANDOM
1
Isotropic
THROUGHOUT
0
0
MAD
Engh & Huber
0.19
0.15
5
0.14
0.09
1.52
50
354
2674
101
0
2219
0.009
1.5
26.5
0.99
0.276
0.017
0.214
1.62
262
4761
16.0
1.52
50
1OZN
33484
33484
0
0
0.053
1
34.0
14.4
96.6
0.214
1.52
1.56
7.4
1
13.8
96.4
data collection
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
data reduction
HKL-2000
Reticulon 4 receptor
1.5A Crystal Structure of the Nogo Receptor Ligand Binding Domain Reveals a Convergent Recognition Scaffold Mediating Inhibition of Myelination
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
The Nogo Receptor ligand binding domain binds myelin inhibtors such as Nogo, Omgp and MAG
A
PRO
242
A
PRO
217
HELX_P
A
ALA
247
A
ALA
222
1
1
6
A
ASP
265
A
ASP
240
HELX_P
A
ARG
267
A
ARG
242
5
2
3
A
ALA
268
A
ALA
243
HELX_P
A
PHE
278
A
PHE
253
1
3
11
A
PRO
290
A
PRO
265
HELX_P
A
ALA
294
A
ALA
269
5
4
5
A
ASP
297
A
ASP
272
HELX_P
A
LEU
301
A
LEU
276
5
5
5
A
ALA
302
A
ALA
277
HELX_P
A
LEU
306
A
LEU
281
5
6
5
disulf
2.047
A
CYS
27
A
SG
CYS
2
1_555
A
CYS
33
A
SG
CYS
8
1_555
disulf
2.041
A
CYS
31
A
SG
CYS
6
1_555
A
CYS
43
A
SG
CYS
18
1_555
disulf
2.041
A
CYS
264
A
SG
CYS
239
1_555
A
CYS
287
A
SG
CYS
262
1_555
disulf
2.033
A
CYS
266
A
SG
CYS
241
1_555
A
CYS
309
A
SG
CYS
284
1_555
covale
1.457
one
N-Glycosylation
A
ASN
82
A
ND2
ASN
57
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.449
one
N-Glycosylation
A
ASN
179
A
ND2
ASN
154
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.403
both
B
NAG
1
B
O4
NAG
1_555
B
NDG
2
B
C1
NDG
1_555
covale
1.395
both
B
NDG
2
B
O4
NDG
1_555
B
MAN
3
B
C1
MAN
1_555
covale
1.400
both
B
MAN
3
B
O6
MAN
1_555
B
MAN
4
B
C1
MAN
1_555
covale
1.391
both
C
NAG
1
C
O4
NAG
1_555
C
NDG
2
C
C1
NDG
1_555
covale
1.386
both
C
NDG
2
C
O4
NDG
1_555
C
BMA
3
C
C1
BMA
1_555
SIGNALING PROTEIN
Nogo Receptor, MAD, Myelination Inhibition, Omgp, MAG, nogo-66, p75, Signal Transduction, Neuronal Regeneration, Ligand Binding, SIGNALING PROTEIN
A
GLU
36
A
GLU
11
1
A
PRO
37
A
PRO
12
0.24
A
LEU
289
A
LEU
264
1
A
PRO
290
A
PRO
265
-0.57
RT4R_HUMAN
UNP
1
26
Q9BZR6
PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA
LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL
HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD
CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA
26
310
1OZN
26
310
Q9BZR6
A
1
1
285
12
2
2
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
32
A
VAL
7
A
TYR
34
A
TYR
9
A
THR
40
A
THR
15
A
SER
42
A
SER
17
A
ARG
61
A
ARG
36
A
PHE
63
A
PHE
38
A
ILE
85
A
ILE
60
A
TRP
87
A
TRP
62
A
GLN
109
A
GLN
84
A
ASP
111
A
ASP
86
A
THR
134
A
THR
109
A
HIS
136
A
HIS
111
A
TYR
158
A
TYR
133
A
TYR
160
A
TYR
135
A
HIS
182
A
HIS
157
A
PHE
184
A
PHE
159
A
ARG
206
A
ARG
181
A
LEU
208
A
LEU
183
A
THR
230
A
THR
205
A
TYR
232
A
TYR
207
A
TYR
254
A
TYR
229
A
ARG
256
A
ARG
231
A
SER
281
A
SER
256
A
SER
282
A
SER
257
A
HIS
71
A
HIS
46
A
VAL
72
A
VAL
47
A
ARG
95
A
ARG
70
A
ILE
96
A
ILE
71
A
SER
192
A
SER
167
A
VAL
193
A
VAL
168
A
HIS
216
A
HIS
191
A
VAL
217
A
VAL
192
A
TRP
262
A
TRP
237
A
VAL
263
A
VAL
238
A
CYS
287
A
CYS
262
A
LEU
289
A
LEU
264
1
P 1