0.031050 -0.012570 -0.007857 0.000000 0.031810 0.000161 0.000000 0.000000 0.017121 0.00000 0.00000 0.00000 He, X. Bazan, J.F. Park, J.B. McDermott, G. He, Z. Garcia, K.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 85.02 75.91 67.96 32.206 33.915 60.221 C2 H4 O2 60.052 ACETIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Neuron NERNET 2038 0896-6273 38 177 185 10.1016/S0896-6273(03)00232-0 12718853 Structure of the Nogo Receptor Ectodomain. A Recognition module implicated in Myelin Inhibition. 2003 NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-12-20 ADSC QUANTUM 4 MAD M x-ray 1 1.0064 1.0 1.0096 1.0 0.9950 1.0 8.2.1 ALS 1.0064, 1.0096, 0.9950 SYNCHROTRON ALS BEAMLINE 8.2.1 31613.375 Reticulon 4 receptor Ligand Binding Domain 1 man polymer 748.682 alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 586.542 beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 60.052 ACETIC ACID 3 syn non-polymer 18.015 water 354 nat water Nogo receptor, NgR, Nogo-66 receptor no no PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo cabbage looper Trichoplusia sample RTN4R OR NOGOR 9606 Homo sapiens 7111 Trichoplusia ni Hi5 baculovirus pAcGP67A 1 1.87 34.21 VAPOR DIFFUSION, SITTING DROP 6 PEG4000, sodium chloride, sodium acetate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Advisory Atomic model Data collection Derived calculations Structure summary 1 0 2003-05-20 1 1 2008-04-29 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id Y NAG 1 n B NAG 1 Y NAG 2 n B NDG 2 Y MAN 3 n B MAN 3 Y MAN 4 n B MAN 4 Z NAG 1 n C NAG 1 Z NAG 2 n C NDG 2 Z MAN 3 n C BMA 3 DManpb b-D-mannopyranose b-D-Manp Man DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc DGlcpNAca N-acetyl-a-D-glucopyranosamine a-D-GlcpNAc GlcNAc RCSB Y RCSB 2003-04-09 REL oligosaccharide oligosaccharide DManpa1-6DManpa1-4DGlcpNAca1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-2-3-3/a4-b1_b4-c1_c6-d1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(6+1)][a-D-Manp]{}}}}} 2 PDB-CARE LINUCS DManpb1-4DGlcpNAca1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2122h-1a_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-2-3/a4-b1_b4-c1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}} 3 PDB-CARE LINUCS C1 O4 NDG NAG 2 1 2 O1 HO4 sing C1 O4 MAN NDG 3 2 2 O1 HO4 sing C1 O6 MAN MAN 4 3 2 O1 HO6 sing C1 O4 NDG NAG 2 1 3 O1 HO4 sing C1 O4 BMA NDG 3 2 3 O1 HO4 sing n n n n n n n ACY ACETIC ACID HOH water ACY 1 4 ACY ACY 1 A ACY 2 4 ACY ACY 2 A ACY 3 4 ACY ACY 3 A TIP 4 5 HOH HOH 408 A TIP 5 5 HOH HOH 409 A TIP 6 5 HOH HOH 410 A TIP 7 5 HOH HOH 411 A TIP 8 5 HOH HOH 412 A TIP 9 5 HOH HOH 413 A TIP 10 5 HOH HOH 414 A TIP 11 5 HOH HOH 415 A TIP 12 5 HOH HOH 416 A TIP 13 5 HOH HOH 417 A TIP 14 5 HOH HOH 418 A TIP 15 5 HOH HOH 419 A TIP 16 5 HOH HOH 420 A TIP 17 5 HOH HOH 421 A TIP 18 5 HOH HOH 422 A TIP 19 5 HOH HOH 423 A TIP 20 5 HOH HOH 424 A TIP 21 5 HOH HOH 425 A TIP 22 5 HOH HOH 426 A TIP 23 5 HOH HOH 427 A TIP 24 5 HOH HOH 428 A TIP 25 5 HOH HOH 429 A TIP 26 5 HOH HOH 430 A TIP 27 5 HOH HOH 431 A TIP 28 5 HOH HOH 432 A TIP 29 5 HOH HOH 433 A TIP 30 5 HOH HOH 434 A TIP 31 5 HOH HOH 435 A TIP 32 5 HOH HOH 436 A TIP 33 5 HOH HOH 437 A TIP 34 5 HOH HOH 438 A TIP 35 5 HOH HOH 439 A TIP 36 5 HOH HOH 440 A TIP 37 5 HOH HOH 441 A TIP 38 5 HOH HOH 442 A TIP 39 5 HOH HOH 443 A TIP 40 5 HOH HOH 444 A TIP 41 5 HOH HOH 445 A TIP 42 5 HOH HOH 446 A TIP 43 5 HOH HOH 447 A TIP 44 5 HOH HOH 448 A TIP 45 5 HOH HOH 449 A TIP 46 5 HOH HOH 450 A TIP 47 5 HOH HOH 451 A TIP 48 5 HOH HOH 452 A TIP 49 5 HOH HOH 453 A TIP 50 5 HOH HOH 454 A TIP 51 5 HOH HOH 455 A TIP 52 5 HOH HOH 456 A TIP 53 5 HOH HOH 457 A TIP 54 5 HOH HOH 458 A TIP 55 5 HOH HOH 459 A TIP 56 5 HOH HOH 460 A TIP 57 5 HOH HOH 461 A TIP 58 5 HOH HOH 462 A TIP 59 5 HOH HOH 463 A TIP 60 5 HOH HOH 464 A TIP 61 5 HOH HOH 465 A TIP 62 5 HOH HOH 466 A TIP 63 5 HOH HOH 467 A TIP 64 5 HOH HOH 468 A TIP 65 5 HOH HOH 469 A TIP 66 5 HOH HOH 470 A TIP 67 5 HOH HOH 471 A TIP 68 5 HOH HOH 472 A TIP 69 5 HOH HOH 473 A TIP 70 5 HOH HOH 474 A TIP 71 5 HOH HOH 475 A TIP 72 5 HOH HOH 476 A TIP 73 5 HOH HOH 477 A TIP 74 5 HOH HOH 478 A TIP 75 5 HOH HOH 479 A TIP 76 5 HOH HOH 480 A TIP 77 5 HOH HOH 481 A TIP 78 5 HOH HOH 482 A TIP 79 5 HOH HOH 483 A TIP 80 5 HOH HOH 484 A TIP 81 5 HOH HOH 485 A TIP 82 5 HOH HOH 486 A TIP 83 5 HOH HOH 487 A TIP 84 5 HOH HOH 488 A TIP 85 5 HOH HOH 489 A TIP 86 5 HOH HOH 490 A TIP 87 5 HOH HOH 491 A TIP 88 5 HOH HOH 492 A TIP 89 5 HOH HOH 493 A TIP 90 5 HOH HOH 494 A TIP 91 5 HOH HOH 495 A TIP 92 5 HOH HOH 496 A TIP 93 5 HOH HOH 497 A TIP 94 5 HOH HOH 498 A TIP 95 5 HOH HOH 499 A TIP 96 5 HOH HOH 500 A TIP 97 5 HOH HOH 501 A TIP 98 5 HOH HOH 502 A TIP 99 5 HOH HOH 503 A TIP 100 5 HOH HOH 504 A TIP 101 5 HOH HOH 505 A TIP 102 5 HOH HOH 506 A TIP 103 5 HOH HOH 507 A TIP 104 5 HOH HOH 508 A TIP 105 5 HOH HOH 509 A TIP 106 5 HOH HOH 510 A TIP 107 5 HOH HOH 511 A TIP 108 5 HOH HOH 512 A TIP 109 5 HOH HOH 513 A TIP 110 5 HOH HOH 514 A TIP 111 5 HOH HOH 515 A TIP 112 5 HOH HOH 516 A TIP 113 5 HOH HOH 517 A TIP 114 5 HOH HOH 518 A TIP 115 5 HOH HOH 519 A TIP 116 5 HOH HOH 520 A TIP 117 5 HOH HOH 521 A TIP 118 5 HOH HOH 522 A TIP 119 5 HOH HOH 523 A TIP 120 5 HOH HOH 524 A TIP 121 5 HOH HOH 525 A TIP 122 5 HOH HOH 526 A TIP 123 5 HOH HOH 527 A TIP 124 5 HOH HOH 528 A TIP 125 5 HOH HOH 529 A TIP 126 5 HOH HOH 530 A TIP 127 5 HOH HOH 531 A TIP 128 5 HOH HOH 532 A TIP 129 5 HOH HOH 533 A TIP 130 5 HOH HOH 534 A TIP 131 5 HOH HOH 535 A TIP 132 5 HOH HOH 536 A TIP 133 5 HOH HOH 537 A TIP 134 5 HOH HOH 538 A TIP 135 5 HOH HOH 539 A TIP 136 5 HOH HOH 540 A TIP 137 5 HOH HOH 541 A TIP 138 5 HOH HOH 542 A TIP 139 5 HOH HOH 543 A TIP 140 5 HOH HOH 544 A TIP 141 5 HOH HOH 545 A TIP 142 5 HOH HOH 546 A TIP 143 5 HOH HOH 547 A TIP 144 5 HOH HOH 548 A TIP 145 5 HOH HOH 549 A TIP 146 5 HOH HOH 550 A TIP 147 5 HOH HOH 551 A TIP 148 5 HOH HOH 552 A TIP 149 5 HOH HOH 553 A TIP 150 5 HOH HOH 554 A TIP 151 5 HOH HOH 555 A TIP 152 5 HOH HOH 556 A TIP 153 5 HOH HOH 557 A TIP 154 5 HOH HOH 558 A TIP 155 5 HOH HOH 559 A TIP 156 5 HOH HOH 560 A TIP 157 5 HOH HOH 561 A TIP 158 5 HOH HOH 562 A TIP 159 5 HOH HOH 563 A TIP 160 5 HOH HOH 564 A TIP 161 5 HOH HOH 565 A TIP 162 5 HOH HOH 566 A TIP 163 5 HOH HOH 567 A TIP 164 5 HOH HOH 568 A TIP 165 5 HOH HOH 569 A TIP 166 5 HOH HOH 570 A TIP 167 5 HOH HOH 571 A TIP 168 5 HOH HOH 572 A TIP 169 5 HOH HOH 573 A TIP 170 5 HOH HOH 574 A TIP 171 5 HOH HOH 575 A TIP 172 5 HOH HOH 576 A TIP 173 5 HOH HOH 577 A TIP 174 5 HOH HOH 578 A TIP 175 5 HOH HOH 579 A TIP 176 5 HOH HOH 580 A TIP 177 5 HOH HOH 581 A TIP 178 5 HOH HOH 582 A TIP 179 5 HOH HOH 583 A TIP 180 5 HOH HOH 584 A TIP 181 5 HOH HOH 585 A TIP 182 5 HOH HOH 586 A TIP 183 5 HOH HOH 587 A TIP 184 5 HOH HOH 588 A TIP 185 5 HOH HOH 589 A TIP 186 5 HOH HOH 590 A TIP 187 5 HOH HOH 591 A TIP 188 5 HOH HOH 592 A TIP 189 5 HOH HOH 593 A TIP 190 5 HOH HOH 594 A TIP 191 5 HOH HOH 595 A TIP 192 5 HOH HOH 596 A TIP 193 5 HOH HOH 597 A TIP 194 5 HOH HOH 598 A TIP 195 5 HOH HOH 599 A TIP 196 5 HOH HOH 600 A TIP 197 5 HOH HOH 601 A TIP 198 5 HOH HOH 602 A TIP 199 5 HOH HOH 603 A TIP 200 5 HOH HOH 604 A TIP 201 5 HOH HOH 605 A TIP 202 5 HOH HOH 606 A TIP 203 5 HOH HOH 607 A TIP 204 5 HOH HOH 608 A TIP 205 5 HOH HOH 609 A TIP 206 5 HOH HOH 610 A TIP 207 5 HOH HOH 611 A TIP 208 5 HOH HOH 612 A TIP 209 5 HOH HOH 613 A TIP 210 5 HOH HOH 614 A TIP 211 5 HOH HOH 615 A TIP 212 5 HOH HOH 616 A TIP 213 5 HOH HOH 617 A TIP 214 5 HOH HOH 618 A TIP 215 5 HOH HOH 619 A TIP 216 5 HOH HOH 620 A TIP 217 5 HOH HOH 621 A TIP 218 5 HOH HOH 622 A TIP 219 5 HOH HOH 623 A TIP 220 5 HOH HOH 624 A TIP 221 5 HOH HOH 625 A TIP 222 5 HOH HOH 626 A TIP 223 5 HOH HOH 627 A TIP 224 5 HOH HOH 628 A TIP 225 5 HOH HOH 629 A TIP 226 5 HOH HOH 630 A TIP 227 5 HOH HOH 631 A TIP 228 5 HOH HOH 632 A TIP 229 5 HOH HOH 633 A TIP 230 5 HOH HOH 634 A TIP 231 5 HOH HOH 635 A TIP 232 5 HOH HOH 636 A TIP 233 5 HOH HOH 637 A TIP 234 5 HOH HOH 638 A TIP 235 5 HOH HOH 639 A TIP 236 5 HOH HOH 640 A TIP 237 5 HOH HOH 641 A TIP 238 5 HOH HOH 642 A TIP 239 5 HOH HOH 643 A TIP 240 5 HOH HOH 644 A TIP 241 5 HOH HOH 645 A TIP 242 5 HOH HOH 646 A TIP 243 5 HOH HOH 647 A TIP 244 5 HOH HOH 648 A TIP 245 5 HOH HOH 649 A TIP 246 5 HOH HOH 650 A TIP 247 5 HOH HOH 651 A TIP 248 5 HOH HOH 652 A TIP 249 5 HOH HOH 653 A TIP 250 5 HOH HOH 654 A TIP 251 5 HOH HOH 655 A TIP 252 5 HOH HOH 656 A TIP 253 5 HOH HOH 657 A TIP 254 5 HOH HOH 658 A TIP 255 5 HOH HOH 659 A TIP 256 5 HOH HOH 660 A TIP 257 5 HOH HOH 661 A TIP 258 5 HOH HOH 662 A TIP 259 5 HOH HOH 663 A TIP 260 5 HOH HOH 664 A TIP 261 5 HOH HOH 665 A TIP 262 5 HOH HOH 666 A TIP 263 5 HOH HOH 667 A TIP 264 5 HOH HOH 668 A TIP 265 5 HOH HOH 669 A TIP 266 5 HOH HOH 670 A TIP 267 5 HOH HOH 671 A TIP 268 5 HOH HOH 672 A TIP 269 5 HOH HOH 673 A TIP 270 5 HOH HOH 674 A TIP 271 5 HOH HOH 675 A TIP 272 5 HOH HOH 676 A TIP 273 5 HOH HOH 677 A TIP 274 5 HOH HOH 678 A TIP 275 5 HOH HOH 679 A TIP 276 5 HOH HOH 680 A TIP 277 5 HOH HOH 681 A TIP 278 5 HOH HOH 682 A TIP 279 5 HOH HOH 683 A TIP 280 5 HOH HOH 684 A TIP 281 5 HOH HOH 685 A TIP 282 5 HOH HOH 686 A TIP 283 5 HOH HOH 687 A TIP 284 5 HOH HOH 688 A TIP 285 5 HOH HOH 689 A TIP 286 5 HOH HOH 690 A TIP 287 5 HOH HOH 691 A TIP 288 5 HOH HOH 692 A TIP 289 5 HOH HOH 693 A TIP 290 5 HOH HOH 694 A TIP 291 5 HOH HOH 695 A TIP 292 5 HOH HOH 696 A TIP 293 5 HOH HOH 697 A TIP 294 5 HOH HOH 698 A TIP 295 5 HOH HOH 699 A TIP 296 5 HOH HOH 700 A TIP 297 5 HOH HOH 701 A TIP 298 5 HOH HOH 702 A TIP 299 5 HOH HOH 703 A TIP 300 5 HOH HOH 704 A TIP 301 5 HOH HOH 705 A TIP 302 5 HOH HOH 706 A TIP 303 5 HOH HOH 707 A TIP 304 5 HOH HOH 708 A TIP 305 5 HOH HOH 709 A TIP 306 5 HOH HOH 710 A TIP 307 5 HOH HOH 711 A TIP 308 5 HOH HOH 712 A TIP 309 5 HOH HOH 713 A TIP 310 5 HOH HOH 714 A TIP 311 5 HOH HOH 715 A TIP 312 5 HOH HOH 716 A TIP 313 5 HOH HOH 717 A TIP 314 5 HOH HOH 718 A TIP 315 5 HOH HOH 719 A TIP 316 5 HOH HOH 720 A TIP 317 5 HOH HOH 721 A TIP 318 5 HOH HOH 722 A TIP 319 5 HOH HOH 723 A TIP 320 5 HOH HOH 724 A TIP 321 5 HOH HOH 725 A TIP 322 5 HOH HOH 726 A TIP 323 5 HOH HOH 727 A TIP 324 5 HOH HOH 728 A TIP 325 5 HOH HOH 729 A TIP 326 5 HOH HOH 730 A TIP 327 5 HOH HOH 731 A TIP 328 5 HOH HOH 732 A TIP 329 5 HOH HOH 733 A TIP 330 5 HOH HOH 734 A TIP 331 5 HOH HOH 735 A TIP 332 5 HOH HOH 736 A TIP 333 5 HOH HOH 737 A TIP 334 5 HOH HOH 738 A TIP 335 5 HOH HOH 739 A TIP 336 5 HOH HOH 740 A TIP 337 5 HOH HOH 741 A TIP 338 5 HOH HOH 742 A TIP 339 5 HOH HOH 743 A TIP 340 5 HOH HOH 744 A TIP 341 5 HOH HOH 745 A TIP 342 5 HOH HOH 746 A TIP 343 5 HOH HOH 747 A TIP 344 5 HOH HOH 748 A TIP 345 5 HOH HOH 749 A TIP 346 5 HOH HOH 750 A TIP 347 5 HOH HOH 751 A TIP 348 5 HOH HOH 752 A TIP 349 5 HOH HOH 753 A TIP 350 5 HOH HOH 754 A TIP 351 5 HOH HOH 755 A TIP 352 5 HOH HOH 756 A TIP 353 5 HOH HOH 757 A TIP 354 5 HOH HOH 758 A TIP 355 5 HOH HOH 759 A TIP 356 5 HOH HOH 760 A TIP 357 5 HOH HOH 761 A PRO 26 n 1 PRO 26 A CYS 27 n 2 CYS 27 A PRO 28 n 3 PRO 28 A GLY 29 n 4 GLY 29 A ALA 30 n 5 ALA 30 A CYS 31 n 6 CYS 31 A VAL 32 n 7 VAL 32 A CYS 33 n 8 CYS 33 A TYR 34 n 9 TYR 34 A ASN 35 n 10 ASN 35 A GLU 36 n 11 GLU 36 A PRO 37 n 12 PRO 37 A LYS 38 n 13 LYS 38 A VAL 39 n 14 VAL 39 A THR 40 n 15 THR 40 A THR 41 n 16 THR 41 A SER 42 n 17 SER 42 A CYS 43 n 18 CYS 43 A PRO 44 n 19 PRO 44 A GLN 45 n 20 GLN 45 A GLN 46 n 21 GLN 46 A GLY 47 n 22 GLY 47 A LEU 48 n 23 LEU 48 A GLN 49 n 24 GLN 49 A ALA 50 n 25 ALA 50 A VAL 51 n 26 VAL 51 A PRO 52 n 27 PRO 52 A VAL 53 n 28 VAL 53 A GLY 54 n 29 GLY 54 A ILE 55 n 30 ILE 55 A PRO 56 n 31 PRO 56 A ALA 57 n 32 ALA 57 A ALA 58 n 33 ALA 58 A SER 59 n 34 SER 59 A GLN 60 n 35 GLN 60 A ARG 61 n 36 ARG 61 A ILE 62 n 37 ILE 62 A PHE 63 n 38 PHE 63 A LEU 64 n 39 LEU 64 A HIS 65 n 40 HIS 65 A GLY 66 n 41 GLY 66 A ASN 67 n 42 ASN 67 A ARG 68 n 43 ARG 68 A ILE 69 n 44 ILE 69 A SER 70 n 45 SER 70 A HIS 71 n 46 HIS 71 A VAL 72 n 47 VAL 72 A PRO 73 n 48 PRO 73 A ALA 74 n 49 ALA 74 A ALA 75 n 50 ALA 75 A SER 76 n 51 SER 76 A PHE 77 n 52 PHE 77 A ARG 78 n 53 ARG 78 A ALA 79 n 54 ALA 79 A CYS 80 n 55 CYS 80 A ARG 81 n 56 ARG 81 A ASN 82 n 57 ASN 82 A LEU 83 n 58 LEU 83 A THR 84 n 59 THR 84 A ILE 85 n 60 ILE 85 A LEU 86 n 61 LEU 86 A TRP 87 n 62 TRP 87 A LEU 88 n 63 LEU 88 A HIS 89 n 64 HIS 89 A SER 90 n 65 SER 90 A ASN 91 n 66 ASN 91 A VAL 92 n 67 VAL 92 A LEU 93 n 68 LEU 93 A ALA 94 n 69 ALA 94 A ARG 95 n 70 ARG 95 A ILE 96 n 71 ILE 96 A ASP 97 n 72 ASP 97 A ALA 98 n 73 ALA 98 A ALA 99 n 74 ALA 99 A ALA 100 n 75 ALA 100 A PHE 101 n 76 PHE 101 A THR 102 n 77 THR 102 A GLY 103 n 78 GLY 103 A LEU 104 n 79 LEU 104 A ALA 105 n 80 ALA 105 A LEU 106 n 81 LEU 106 A LEU 107 n 82 LEU 107 A GLU 108 n 83 GLU 108 A GLN 109 n 84 GLN 109 A LEU 110 n 85 LEU 110 A ASP 111 n 86 ASP 111 A LEU 112 n 87 LEU 112 A SER 113 n 88 SER 113 A ASP 114 n 89 ASP 114 A ASN 115 n 90 ASN 115 A ALA 116 n 91 ALA 116 A GLN 117 n 92 GLN 117 A LEU 118 n 93 LEU 118 A ARG 119 n 94 ARG 119 A SER 120 n 95 SER 120 A VAL 121 n 96 VAL 121 A ASP 122 n 97 ASP 122 A PRO 123 n 98 PRO 123 A ALA 124 n 99 ALA 124 A THR 125 n 100 THR 125 A PHE 126 n 101 PHE 126 A HIS 127 n 102 HIS 127 A GLY 128 n 103 GLY 128 A LEU 129 n 104 LEU 129 A GLY 130 n 105 GLY 130 A ARG 131 n 106 ARG 131 A LEU 132 n 107 LEU 132 A HIS 133 n 108 HIS 133 A THR 134 n 109 THR 134 A LEU 135 n 110 LEU 135 A HIS 136 n 111 HIS 136 A LEU 137 n 112 LEU 137 A ASP 138 n 113 ASP 138 A ARG 139 n 114 ARG 139 A CYS 140 n 115 CYS 140 A GLY 141 n 116 GLY 141 A LEU 142 n 117 LEU 142 A GLN 143 n 118 GLN 143 A GLU 144 n 119 GLU 144 A LEU 145 n 120 LEU 145 A GLY 146 n 121 GLY 146 A PRO 147 n 122 PRO 147 A GLY 148 n 123 GLY 148 A LEU 149 n 124 LEU 149 A PHE 150 n 125 PHE 150 A ARG 151 n 126 ARG 151 A GLY 152 n 127 GLY 152 A LEU 153 n 128 LEU 153 A ALA 154 n 129 ALA 154 A ALA 155 n 130 ALA 155 A LEU 156 n 131 LEU 156 A GLN 157 n 132 GLN 157 A TYR 158 n 133 TYR 158 A LEU 159 n 134 LEU 159 A TYR 160 n 135 TYR 160 A LEU 161 n 136 LEU 161 A GLN 162 n 137 GLN 162 A ASP 163 n 138 ASP 163 A ASN 164 n 139 ASN 164 A ALA 165 n 140 ALA 165 A LEU 166 n 141 LEU 166 A GLN 167 n 142 GLN 167 A ALA 168 n 143 ALA 168 A LEU 169 n 144 LEU 169 A PRO 170 n 145 PRO 170 A ASP 171 n 146 ASP 171 A ASP 172 n 147 ASP 172 A THR 173 n 148 THR 173 A PHE 174 n 149 PHE 174 A ARG 175 n 150 ARG 175 A ASP 176 n 151 ASP 176 A LEU 177 n 152 LEU 177 A GLY 178 n 153 GLY 178 A ASN 179 n 154 ASN 179 A LEU 180 n 155 LEU 180 A THR 181 n 156 THR 181 A HIS 182 n 157 HIS 182 A LEU 183 n 158 LEU 183 A PHE 184 n 159 PHE 184 A LEU 185 n 160 LEU 185 A HIS 186 n 161 HIS 186 A GLY 187 n 162 GLY 187 A ASN 188 n 163 ASN 188 A ARG 189 n 164 ARG 189 A ILE 190 n 165 ILE 190 A SER 191 n 166 SER 191 A SER 192 n 167 SER 192 A VAL 193 n 168 VAL 193 A PRO 194 n 169 PRO 194 A GLU 195 n 170 GLU 195 A ARG 196 n 171 ARG 196 A ALA 197 n 172 ALA 197 A PHE 198 n 173 PHE 198 A ARG 199 n 174 ARG 199 A GLY 200 n 175 GLY 200 A LEU 201 n 176 LEU 201 A HIS 202 n 177 HIS 202 A SER 203 n 178 SER 203 A LEU 204 n 179 LEU 204 A ASP 205 n 180 ASP 205 A ARG 206 n 181 ARG 206 A LEU 207 n 182 LEU 207 A LEU 208 n 183 LEU 208 A LEU 209 n 184 LEU 209 A HIS 210 n 185 HIS 210 A GLN 211 n 186 GLN 211 A ASN 212 n 187 ASN 212 A ARG 213 n 188 ARG 213 A VAL 214 n 189 VAL 214 A ALA 215 n 190 ALA 215 A HIS 216 n 191 HIS 216 A VAL 217 n 192 VAL 217 A HIS 218 n 193 HIS 218 A PRO 219 n 194 PRO 219 A HIS 220 n 195 HIS 220 A ALA 221 n 196 ALA 221 A PHE 222 n 197 PHE 222 A ARG 223 n 198 ARG 223 A ASP 224 n 199 ASP 224 A LEU 225 n 200 LEU 225 A GLY 226 n 201 GLY 226 A ARG 227 n 202 ARG 227 A LEU 228 n 203 LEU 228 A MET 229 n 204 MET 229 A THR 230 n 205 THR 230 A LEU 231 n 206 LEU 231 A TYR 232 n 207 TYR 232 A LEU 233 n 208 LEU 233 A PHE 234 n 209 PHE 234 A ALA 235 n 210 ALA 235 A ASN 236 n 211 ASN 236 A ASN 237 n 212 ASN 237 A LEU 238 n 213 LEU 238 A SER 239 n 214 SER 239 A ALA 240 n 215 ALA 240 A LEU 241 n 216 LEU 241 A PRO 242 n 217 PRO 242 A THR 243 n 218 THR 243 A GLU 244 n 219 GLU 244 A ALA 245 n 220 ALA 245 A LEU 246 n 221 LEU 246 A ALA 247 n 222 ALA 247 A PRO 248 n 223 PRO 248 A LEU 249 n 224 LEU 249 A ARG 250 n 225 ARG 250 A ALA 251 n 226 ALA 251 A LEU 252 n 227 LEU 252 A GLN 253 n 228 GLN 253 A TYR 254 n 229 TYR 254 A LEU 255 n 230 LEU 255 A ARG 256 n 231 ARG 256 A LEU 257 n 232 LEU 257 A ASN 258 n 233 ASN 258 A ASP 259 n 234 ASP 259 A ASN 260 n 235 ASN 260 A PRO 261 n 236 PRO 261 A TRP 262 n 237 TRP 262 A VAL 263 n 238 VAL 263 A CYS 264 n 239 CYS 264 A ASP 265 n 240 ASP 265 A CYS 266 n 241 CYS 266 A ARG 267 n 242 ARG 267 A ALA 268 n 243 ALA 268 A ARG 269 n 244 ARG 269 A PRO 270 n 245 PRO 270 A LEU 271 n 246 LEU 271 A TRP 272 n 247 TRP 272 A ALA 273 n 248 ALA 273 A TRP 274 n 249 TRP 274 A LEU 275 n 250 LEU 275 A GLN 276 n 251 GLN 276 A LYS 277 n 252 LYS 277 A PHE 278 n 253 PHE 278 A ARG 279 n 254 ARG 279 A GLY 280 n 255 GLY 280 A SER 281 n 256 SER 281 A SER 282 n 257 SER 282 A SER 283 n 258 SER 283 A GLU 284 n 259 GLU 284 A VAL 285 n 260 VAL 285 A PRO 286 n 261 PRO 286 A CYS 287 n 262 CYS 287 A SER 288 n 263 SER 288 A LEU 289 n 264 LEU 289 A PRO 290 n 265 PRO 290 A GLN 291 n 266 GLN 291 A ARG 292 n 267 ARG 292 A LEU 293 n 268 LEU 293 A ALA 294 n 269 ALA 294 A GLY 295 n 270 GLY 295 A ARG 296 n 271 ARG 296 A ASP 297 n 272 ASP 297 A LEU 298 n 273 LEU 298 A LYS 299 n 274 LYS 299 A ARG 300 n 275 ARG 300 A LEU 301 n 276 LEU 301 A ALA 302 n 277 ALA 302 A ALA 303 n 278 ALA 303 A ASN 304 n 279 ASN 304 A ASP 305 n 280 ASP 305 A LEU 306 n 281 LEU 306 A GLN 307 n 282 GLN 307 A GLY 308 n 283 GLY 308 A CYS 309 n 284 CYS 309 A n 285 310 A author_defined_assembly 1 monomeric A ASN 82 GLYCOSYLATION SITE A ASN 57 ASN A ASN 179 GLYCOSYLATION SITE A ASN 154 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 32 A N VAL 7 A O SER 42 A O SER 17 A N THR 41 A N THR 16 A O ARG 61 A O ARG 36 A N ILE 62 A N ILE 37 A O TRP 87 A O TRP 62 A N LEU 86 A N LEU 61 A O GLN 109 A O GLN 84 A N LEU 110 A N LEU 85 A O HIS 136 A O HIS 111 A N LEU 135 A N LEU 110 A O TYR 160 A O TYR 135 A N LEU 159 A N LEU 134 A O HIS 182 A O HIS 157 A N LEU 183 A N LEU 158 A O ARG 206 A O ARG 181 A N LEU 207 A N LEU 182 A O THR 230 A O THR 205 A N LEU 231 A N LEU 206 A O TYR 254 A O TYR 229 A N LEU 255 A N LEU 230 A O SER 281 A O SER 256 A N VAL 72 A N VAL 47 A O ARG 95 A O ARG 70 A N VAL 193 A N VAL 168 A O HIS 216 A O HIS 191 A N TRP 262 A N TRP 237 A O SER 288 A O SER 263 1 A ALA 310 A ALA 285 1 Y 1 B C1 NAG 1 WRONG HAND 1 A ALA 30 82.85 -4.88 1 A ASN 67 -108.05 -162.20 1 A ASN 91 -115.80 -151.78 1 A LEU 104 -97.53 53.21 1 A ARG 119 63.49 -40.75 1 A ASN 164 -115.09 -151.17 1 A ASP 172 59.47 19.47 1 A ASN 188 -120.05 -163.68 1 A ASN 212 -126.81 -154.98 1 A LEU 225 -91.20 54.23 1 A ASP 265 -119.12 -149.07 19.5 0.90 -3.31 -1.55 1.51 1.90 -2.42 0.198 0.167 0.168 0.168 1.52 50 1634 32883 32883 RANDOM 1 Isotropic THROUGHOUT 0 0 MAD Engh & Huber 0.19 0.15 5 0.14 0.09 1.52 50 354 2674 101 0 2219 0.009 1.5 26.5 0.99 0.276 0.017 0.214 1.62 262 4761 16.0 1.52 50 1OZN 33484 33484 0 0 0.053 1 34.0 14.4 96.6 0.214 1.52 1.56 7.4 1 13.8 96.4 data collection HKL-2000 data scaling SCALEPACK phasing SOLVE refinement CNS data reduction HKL-2000 Reticulon 4 receptor 1.5A Crystal Structure of the Nogo Receptor Ligand Binding Domain Reveals a Convergent Recognition Scaffold Mediating Inhibition of Myelination 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N The Nogo Receptor ligand binding domain binds myelin inhibtors such as Nogo, Omgp and MAG A PRO 242 A PRO 217 HELX_P A ALA 247 A ALA 222 1 1 6 A ASP 265 A ASP 240 HELX_P A ARG 267 A ARG 242 5 2 3 A ALA 268 A ALA 243 HELX_P A PHE 278 A PHE 253 1 3 11 A PRO 290 A PRO 265 HELX_P A ALA 294 A ALA 269 5 4 5 A ASP 297 A ASP 272 HELX_P A LEU 301 A LEU 276 5 5 5 A ALA 302 A ALA 277 HELX_P A LEU 306 A LEU 281 5 6 5 disulf 2.047 A CYS 27 A SG CYS 2 1_555 A CYS 33 A SG CYS 8 1_555 disulf 2.041 A CYS 31 A SG CYS 6 1_555 A CYS 43 A SG CYS 18 1_555 disulf 2.041 A CYS 264 A SG CYS 239 1_555 A CYS 287 A SG CYS 262 1_555 disulf 2.033 A CYS 266 A SG CYS 241 1_555 A CYS 309 A SG CYS 284 1_555 covale 1.457 one N-Glycosylation A ASN 82 A ND2 ASN 57 1_555 B NAG 1 B C1 NAG 1_555 covale 1.449 one N-Glycosylation A ASN 179 A ND2 ASN 154 1_555 C NAG 1 C C1 NAG 1_555 covale 1.403 both B NAG 1 B O4 NAG 1_555 B NDG 2 B C1 NDG 1_555 covale 1.395 both B NDG 2 B O4 NDG 1_555 B MAN 3 B C1 MAN 1_555 covale 1.400 both B MAN 3 B O6 MAN 1_555 B MAN 4 B C1 MAN 1_555 covale 1.391 both C NAG 1 C O4 NAG 1_555 C NDG 2 C C1 NDG 1_555 covale 1.386 both C NDG 2 C O4 NDG 1_555 C BMA 3 C C1 BMA 1_555 SIGNALING PROTEIN Nogo Receptor, MAD, Myelination Inhibition, Omgp, MAG, nogo-66, p75, Signal Transduction, Neuronal Regeneration, Ligand Binding, SIGNALING PROTEIN A GLU 36 A GLU 11 1 A PRO 37 A PRO 12 0.24 A LEU 289 A LEU 264 1 A PRO 290 A PRO 265 -0.57 RT4R_HUMAN UNP 1 26 Q9BZR6 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 26 310 1OZN 26 310 Q9BZR6 A 1 1 285 12 2 2 2 anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A VAL 32 A VAL 7 A TYR 34 A TYR 9 A THR 40 A THR 15 A SER 42 A SER 17 A ARG 61 A ARG 36 A PHE 63 A PHE 38 A ILE 85 A ILE 60 A TRP 87 A TRP 62 A GLN 109 A GLN 84 A ASP 111 A ASP 86 A THR 134 A THR 109 A HIS 136 A HIS 111 A TYR 158 A TYR 133 A TYR 160 A TYR 135 A HIS 182 A HIS 157 A PHE 184 A PHE 159 A ARG 206 A ARG 181 A LEU 208 A LEU 183 A THR 230 A THR 205 A TYR 232 A TYR 207 A TYR 254 A TYR 229 A ARG 256 A ARG 231 A SER 281 A SER 256 A SER 282 A SER 257 A HIS 71 A HIS 46 A VAL 72 A VAL 47 A ARG 95 A ARG 70 A ILE 96 A ILE 71 A SER 192 A SER 167 A VAL 193 A VAL 168 A HIS 216 A HIS 191 A VAL 217 A VAL 192 A TRP 262 A TRP 237 A VAL 263 A VAL 238 A CYS 287 A CYS 262 A LEU 289 A LEU 264 1 P 1