1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lee, K.H. Lee, D.G. Park, Y.K. Harm, K.S. Kim, Y.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Interactions between antimicrobial peptide, HP(2-20) derived from helicobacter pylori, and membrain studied by nmr spectroscopy 10.2210/pdb1p0g/pdb pdb_00001p0g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2325.836 19-mer peptide from 50S ribosomal protein L1 1 syn polymer ribosomal protein L1 no yes AKKVFKRLEKLFSKIQNDK(NH2) AKKVFKRLEKLFSKIQNDKX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_exptl_sample_conditions pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Experimental preparation 1 0 2003-05-20 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HP (2-20) analogue 1 HP (2-20) analogue 2 HP (2-20) analogue 3 RCSB Y PDBJ 2003-04-10 REL REL The peptide was chemically synthesized. The sequence of peptide is naturally found in Helicobacter pylori sample THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES structures with the lowest energy 50 20 2D NOESY DQF-COSY 6 1 atm 318 K HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING 1.5MM PEPTIDE; 150MM SDS-D25 90% H2O/10% D2O processing Felix 95.0 collection XwinNMR 2.5 refinement CNS 1.1 400 Bruker AVANCE ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A PHE 5 n 5 PHE 5 A LYS 6 n 6 LYS 6 A ARG 7 n 7 ARG 7 A LEU 8 n 8 LEU 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A LEU 11 n 11 LEU 11 A PHE 12 n 12 PHE 12 A SER 13 n 13 SER 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLN 16 n 16 GLN 16 A ASN 17 n 17 ASN 17 A ASP 18 n 18 ASP 18 A LYS 19 n 19 LYS 19 A NH2 20 n 20 NH2 20 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A LYS 2 -94.77 46.20 1 A GLN 16 -94.08 30.09 2 A LYS 2 -93.75 47.90 2 A ASP 18 -95.06 -65.39 3 A LYS 2 -94.45 47.83 3 A ASP 18 -62.28 -75.08 4 A LYS 2 -100.10 55.03 4 A LYS 3 -91.59 41.14 5 A LYS 2 -99.56 48.45 6 A LYS 2 -92.29 49.69 6 A ASN 17 -61.64 -175.95 7 A LYS 2 -95.20 47.09 8 A LYS 2 -98.03 47.76 8 A LYS 3 -160.48 39.32 9 A LYS 2 -99.62 53.69 9 A ASP 18 -94.87 44.73 10 A LYS 2 -98.31 47.82 10 A LYS 3 -151.30 38.20 11 A LYS 2 -99.97 47.05 11 A LYS 3 -149.71 38.03 11 A ASP 18 -82.81 -73.92 12 A LYS 2 -100.03 52.40 12 A LYS 3 39.47 39.65 12 A ASP 18 -92.86 -61.55 13 A LYS 2 -100.05 53.59 13 A LYS 3 -98.57 37.49 14 A LYS 2 -96.49 47.97 15 A LYS 2 -99.98 54.05 15 A LYS 3 -95.46 41.18 15 A ASP 18 -95.16 30.65 16 A LYS 2 -96.92 46.29 16 A LYS 3 -145.63 38.25 16 A ASP 18 -95.21 30.92 17 A LYS 2 -93.04 48.42 17 A LYS 3 -100.55 40.07 17 A GLN 16 -97.24 37.17 18 A LYS 2 -94.25 47.75 18 A LYS 3 -148.29 39.01 18 A ASN 17 -95.04 35.83 19 A LYS 2 -99.97 46.67 20 A LYS 2 -93.52 48.12 Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy 1 N N A VAL 4 A VAL 4 HELX_P A GLN 16 A GLN 16 1 1 13 covale 1.328 both A LYS 19 A C LYS 19 1_555 A NH2 20 A N NH2 20 1_555 RIBOSOME coil-helix-coil, RIBOSOME RL1_HELPJ UNP 1 2 Q9ZK21 AKKVFKRLEKLFSKIQNDK 2 20 1P0G 1 19 Q9ZK21 A 1 1 19 BINDING SITE FOR RESIDUE NH2 A 20 A NH2 20 Software 1 A LYS 19 A LYS 19 1 1_555