1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lee, K.H. Lee, D.G. Park, Y.K. Harm, K.S. Kim, Y.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Interactions between antimicrobial peptide, HP(2-20) derived from helicobacter pylori, and membrain studied by nmr spectroscopy 10.2210/pdb1p0l/pdb pdb_00001p0l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2383.917 19-mer peptide from 50S ribosomal protein L1 Q16W 1 syn polymer ribosomal protein L1 no yes AKKVFKRLEKLFSKIWNDK(NH2) AKKVFKRLEKLFSKIWNDKX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_exptl_sample_conditions pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Experimental preparation 1 0 2003-05-20 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HP (2-20) HP (2-20) analogue 1 HP (2-20) analogue 3 RCSB Y PDBJ 2003-04-10 REL REL this peptide was chemically synthesized. The sequence for this peptide which N-terminus of Helicobacter pylori ribosomal protein L1 sample THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES structures with the lowest energy 50 20 2D NOESY DQF-COSY 6 1 atm 318 K HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING 1.5MM PEPTIDE; 150MM SDS-D25 90% H2O/10% D2O processing Felix 95.0 collection XwinNMR 2.5 refinement CNS 1.1 400 Bruker AVANCE ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A PHE 5 n 5 PHE 5 A LYS 6 n 6 LYS 6 A ARG 7 n 7 ARG 7 A LEU 8 n 8 LEU 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A LEU 11 n 11 LEU 11 A PHE 12 n 12 PHE 12 A SER 13 n 13 SER 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A TRP 16 n 16 TRP 16 A ASN 17 n 17 ASN 17 A ASP 18 n 18 ASP 18 A LYS 19 n 19 LYS 19 A NH2 20 n 20 NH2 20 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 4 A LYS 3 -175.58 37.43 7 A LYS 2 -99.98 32.08 7 A LYS 3 -100.00 37.12 9 A LYS 2 -97.36 38.67 9 A LYS 3 -143.90 39.06 11 A LYS 2 -99.95 31.54 11 A LYS 3 38.96 37.13 13 A LYS 2 -98.65 30.49 15 A LYS 2 -98.19 32.23 16 A LYS 2 -100.08 53.96 16 A LYS 3 -95.80 38.93 18 A LYS 3 -176.39 37.95 19 A LYS 3 -158.88 35.87 20 A LYS 3 -170.19 38.44 HP (2-20) Substitution GLN To TRP Modification In SDS-D25 MICELLES 1 N N A VAL 4 A VAL 4 HELX_P A LYS 19 A LYS 19 1 1 16 covale 1.328 both A LYS 19 A C LYS 19 1_555 A NH2 20 A N NH2 20 1_555 RIBOSOME COIL-HELIX-COIL, RIBOSOME RL1_HELPJ UNP 1 2 Q9ZK21 AKKVFKRLEKLFSKIQNDK 2 20 1P0L 1 19 Q9ZK21 A 1 1 19 1 GLN engineered mutation TRP 16 1P0L A Q9ZK21 UNP 17 16 BINDING SITE FOR RESIDUE NH2 A 20 A NH2 20 Software 2 A ASP 18 A ASP 18 2 1_555 A LYS 19 A LYS 19 2 1_555