1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Chin, K.H.
Chou, S.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
329
351
361
10.1016/S0022-2836(03)00440-6
12758081
Sheared-type G(anti).C(syn) Base-pair: A Unique d(GXC) Loop Closure Motif.
2003
10.2210/pdb1p0u/pdb
pdb_00001p0u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3976.599
5'-D(*GP*CP*AP*TP*CP*GP*AP*CP*GP*AP*TP*GP*C)-3'
1
syn
polymer
no
no
(DG)(DC)(DA)(DT)(DC)(DG)(DA)(DC)(DG)(DA)(DT)(DG)(DC)
GCATCGACGATGC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-14.624
1
19
A
1
A
13
1.321
A_DG1:DC13_A
1
-20.536
-0.882
-0.613
-0.313
-18.201
1
19
A
2
A
12
-2.945
A_DC2:DG12_A
2
-9.250
0.893
0.175
-0.307
-8.530
1
20
A
3
A
11
-4.093
A_DA3:DT11_A
3
-13.156
-0.210
0.458
-0.173
-4.198
1
20
A
4
A
10
-2.539
A_DT4:DA10_A
4
-6.157
0.235
0.398
-0.081
-1.483
1
19
A
5
A
9
-0.925
A_DC5:DG9_A
5
-6.473
0.967
0.233
-0.325
13.615
6
A
6
A
8
-76.039
A_DG6:DC8_A
6
-29.079
2.232
0.379
-2.686
3.332
38.398
A
A
1
2
3.452
A
A
13
12
3.313
2.260
-0.757
-0.937
AA_DG1DC2:DG12DC13_AA
1
-6.175
9.432
37.852
-1.713
0.363
2.340
32.011
A
A
2
3
20.048
A
A
12
11
2.711
10.847
0.402
-0.672
AA_DC2DA3:DT11DG12_AA
2
0.315
-0.583
30.161
-2.778
-0.684
3.152
32.132
A
A
3
4
1.465
A
A
11
10
3.169
0.811
0.319
-1.026
AA_DA3DT4:DA10DT11_AA
3
1.229
-2.222
32.099
-1.995
-0.364
2.949
33.351
A
A
4
5
4.405
A
A
10
9
3.057
2.525
0.055
-1.342
AA_DT4DC5:DG9DA10_AA
4
1.580
-2.757
33.221
-2.725
0.145
3.044
93.772
A
A
5
6
4.436
A
A
9
8
3.122
6.472
1.413
-0.375
AA_DC5DG6:DC8DG9_AA
5
-4.476
3.068
93.518
-0.369
-1.045
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2003-06-03
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-29
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
PDBJ
2003-04-11
REL
This structure was determined using standard 2D homonuclear techniques.
10
2D NOESY
DQF-COSY
P-COSY
2D TOCSY
6.8
ambient
278
K
distance geometry, simulated annealing, molecular dynamics
lowest energy
20mM NaCl, 10mM phosphate buffer
90% H2O, 10% D2O; 100% D2O
processing
Felix
refinement
Discover
structure solution
DGII
600
Varian
G5'
1
n
1
DG
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
A
10
n
10
DA
10
A
T
11
n
11
DT
11
A
G
12
n
12
DG
12
A
C3'
13
n
13
DC
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
5
0.057
SIDE CHAIN
1
A
DG
9
0.096
SIDE CHAIN
1
A
DA
10
0.064
SIDE CHAIN
2
A
DG
9
0.087
SIDE CHAIN
3
A
DC
8
0.076
SIDE CHAIN
3
A
DG
9
0.101
SIDE CHAIN
3
A
DG
12
0.079
SIDE CHAIN
3
A
DC
13
0.076
SIDE CHAIN
4
A
DA
3
0.066
SIDE CHAIN
4
A
DC
8
0.075
SIDE CHAIN
4
A
DG
9
0.123
SIDE CHAIN
4
A
DG
12
0.068
SIDE CHAIN
4
A
DC
13
0.084
SIDE CHAIN
5
A
DC
8
0.083
SIDE CHAIN
5
A
DG
9
0.114
SIDE CHAIN
6
A
DC
8
0.075
SIDE CHAIN
6
A
DG
9
0.108
SIDE CHAIN
7
A
DC
8
0.075
SIDE CHAIN
7
A
DG
9
0.089
SIDE CHAIN
8
A
DC
8
0.074
SIDE CHAIN
8
A
DG
9
0.088
SIDE CHAIN
8
A
DG
12
0.068
SIDE CHAIN
9
A
DA
3
0.063
SIDE CHAIN
9
A
DG
9
0.091
SIDE CHAIN
9
A
DG
12
0.072
SIDE CHAIN
10
A
DC
8
0.072
SIDE CHAIN
10
A
DG
9
0.103
SIDE CHAIN
1
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
4.27
0.30
108.30
112.57
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
3.62
0.60
118.90
122.52
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
1
4.60
0.30
108.30
112.90
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
2
2.82
0.30
108.30
111.12
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
2
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
4.88
0.30
108.30
113.18
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
2.80
0.30
108.30
111.10
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
4.47
0.30
108.30
112.77
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
2
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
3.26
0.30
108.30
111.56
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
3
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
4.26
0.30
108.30
112.56
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
3
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
3.86
0.60
118.90
122.76
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
3
3.79
0.30
108.30
112.09
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
3
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
4
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
4
4.16
0.30
108.30
112.46
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
4
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
2.05
0.30
108.30
110.35
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
4
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
4
3.78
0.60
118.90
122.68
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
4
3.68
0.30
108.30
111.98
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
4
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
5
3.00
0.30
108.30
111.30
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
5
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
5
3.91
0.30
108.30
112.21
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
5
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
5
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
5
3.85
0.60
118.90
122.75
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
5
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
5
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
3.40
0.30
108.30
111.70
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
6
2.59
0.30
108.30
110.89
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
6
4.74
0.30
108.30
113.04
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
6
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
6
2.26
0.30
108.30
110.56
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
3.83
0.60
118.90
122.73
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
6
4.36
0.30
108.30
112.66
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
6
2.16
0.30
108.30
110.46
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
6
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
7
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
7
3.87
0.30
108.30
112.17
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
7
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
7
3.78
0.60
118.90
122.68
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
7
4.42
0.30
108.30
112.72
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
7
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
7
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
4.13
0.30
108.30
112.43
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
8
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
8
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
8
4.86
0.30
108.30
113.16
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
8
2.39
0.30
108.30
110.69
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
8
3.61
0.60
118.90
122.51
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
8
4.86
0.30
108.30
113.16
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
8
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
8
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
8
2.54
0.30
108.30
110.84
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
9
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
9
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
9
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
9
4.57
0.30
108.30
112.87
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
9
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
9
2.16
0.30
108.30
110.46
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
9
3.68
0.60
118.90
122.58
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
9
5.08
0.30
108.30
113.38
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
9
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
9
2.17
0.30
108.30
110.47
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
9
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
10
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
2.39
0.30
108.30
110.69
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
10
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
10
5.14
0.30
108.30
113.44
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
10
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
10
3.82
0.60
118.90
122.72
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
10
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
10
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
10
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
10
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
Sheared G/C Base Pair
1
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
13
A
N3
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
13
A
O2
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
13
A
N4
DC
13
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
12
A
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
12
A
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
12
A
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
A
DT
11
A
N3
DT
11
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
A
DT
11
A
O4
DT
11
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
10
A
N1
DA
10
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
10
A
N6
DA
10
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
A
DG
9
A
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
A
DG
9
A
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
A
DG
9
A
N2
DG
9
1_555
hydrog
DG-DC PAIR
A
DG
6
A
N2
DG
6
1_555
A
DC
8
A
N3
DC
8
1_555
DNA
Sheared GC base pair, single-residue loop, syn cytidine, DNA
1P0U
PDB
1
1P0U
1
13
1P0U
1
13
1P0U
A
1
1
13