1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ryu, K.S.
Lee, K.J.
Bae, S.H.
Kim, B.K.
Kim, K.A.
Choi, B.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
36621
36627
10.1074/jbc.M304628200
12832454
Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
2003
10.2210/pdb1p1a/pdb
pdb_00001p1a
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
9524.032
UV excision repair protein RAD23 homolog B
Ubiquitin-like domain
1
man
polymer
RAD23, hHR23B
no
no
GSHMQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP
KAVST
GSHMQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP
KAVST
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
hHR23B
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21 DE3
Plasmid
pET15b
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-07-13
1
1
2008-04-29
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2003-04-11
REL
REL
Distance Restraints From 2D D2O-NOESY, 3D 15N-NOESY-HSQC, Angle Restaints From Intensity-modulated 15N HSQC and Talos Chemical shift analysis
structures with the lowest energy
60
14
CBCACONH, HNCACB, CCC-TOC-NNH, HCC-TOC-NNH, HNCO
3D_15N-separated_TOCSY, Intensity-modulated 15N HSQC
2D NOESY
50mM sodium phosphate + 100mM sodium chloride
6.0
ambient
303
K
50mM sodium phosphate + 100mM sodium chloride
6.0
ambient
303
K
50mM sodium phosphate + 100mM sodium chloride
6.0
ambient
303
K
Cyana-Automated NOE assignment, Torsion angle dynamics; Amber-Simulated annealing, Cyana output is the initial structure
1
closest to the average
2mM UbL domain 15N,13C; 50mM Sodium Phosphate Buffer with 100mM NaCl
92.5% H2O, 7.5% D2O
2mM UbL domain 15N; 50mM Sodium Phosphate Buffer with 100mM NaCl
92.5% H2O, 7.5% D2O
2mM UbL domain non-labeled; 50mM Sodium Phosphate Buffer with 100mM NaCl
100% D2O
structure solution
CYANA
1.0.6
refinement
Amber
7
600
Varian
INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
MET
4
n
4
MET
4
A
GLN
5
n
5
GLN
5
A
VAL
6
n
6
VAL
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
THR
10
n
10
THR
10
A
LEU
11
n
11
LEU
11
A
GLN
12
n
12
GLN
12
A
GLN
13
n
13
GLN
13
A
GLN
14
n
14
GLN
14
A
THR
15
n
15
THR
15
A
PHE
16
n
16
PHE
16
A
LYS
17
n
17
LYS
17
A
ILE
18
n
18
ILE
18
A
ASP
19
n
19
ASP
19
A
ILE
20
n
20
ILE
20
A
ASP
21
n
21
ASP
21
A
PRO
22
n
22
PRO
22
A
GLU
23
n
23
GLU
23
A
GLU
24
n
24
GLU
24
A
THR
25
n
25
THR
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
GLU
31
n
31
GLU
31
A
LYS
32
n
32
LYS
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
SER
35
n
35
SER
35
A
GLU
36
n
36
GLU
36
A
LYS
37
n
37
LYS
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
ASP
40
n
40
ASP
40
A
ALA
41
n
41
ALA
41
A
PHE
42
n
42
PHE
42
A
PRO
43
n
43
PRO
43
A
VAL
44
n
44
VAL
44
A
ALA
45
n
45
ALA
45
A
GLY
46
n
46
GLY
46
A
GLN
47
n
47
GLN
47
A
LYS
48
n
48
LYS
48
A
LEU
49
n
49
LEU
49
A
ILE
50
n
50
ILE
50
A
TYR
51
n
51
TYR
51
A
ALA
52
n
52
ALA
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
ASN
57
n
57
ASN
57
A
ASP
58
n
58
ASP
58
A
ASP
59
n
59
ASP
59
A
THR
60
n
60
THR
60
A
ALA
61
n
61
ALA
61
A
LEU
62
n
62
LEU
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
TYR
65
n
65
TYR
65
A
LYS
66
n
66
LYS
66
A
ILE
67
n
67
ILE
67
A
ASP
68
n
68
ASP
68
A
GLU
69
n
69
GLU
69
A
LYS
70
n
70
LYS
70
A
ASN
71
n
71
ASN
71
A
PHE
72
n
72
PHE
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
VAL
75
n
75
VAL
75
A
MET
76
n
76
MET
76
A
VAL
77
n
77
VAL
77
A
THR
78
n
78
THR
78
A
LYS
79
n
79
LYS
79
A
PRO
80
n
80
PRO
80
A
LYS
81
n
81
LYS
81
A
ALA
82
n
82
ALA
82
A
VAL
83
n
83
VAL
83
A
SER
84
n
84
SER
84
A
THR
85
n
85
THR
85
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
20
A
O
ILE
20
A
N
MET
4
A
N
MET
4
A
N
LYS
9
A
N
LYS
9
A
O
VAL
73
A
O
VAL
73
A
O
VAL
74
A
O
VAL
74
A
N
ILE
50
A
N
ILE
50
A
N
TYR
51
A
N
TYR
51
A
O
LYS
54
A
O
LYS
54
1
A
LEU
11
-62.77
1.99
1
A
TYR
51
-102.49
78.88
1
A
LYS
79
112.67
-43.14
2
A
SER
2
-142.99
39.58
2
A
ALA
52
49.96
23.72
4
A
HIS
3
60.26
163.21
4
A
LYS
79
-149.06
-34.33
4
A
LYS
81
58.67
-43.65
5
A
LEU
11
-59.46
0.97
5
A
ALA
52
49.51
25.37
5
A
LYS
79
-12.14
112.99
6
A
ALA
52
56.17
15.27
7
A
LYS
79
-131.85
-47.17
8
A
SER
2
-150.33
2.63
8
A
LEU
11
-66.81
1.94
8
A
VAL
83
-140.13
-11.26
9
A
ALA
52
49.40
26.22
9
A
VAL
83
-140.12
-1.94
10
A
LEU
11
-63.37
7.30
10
A
ALA
82
-68.41
99.93
10
A
VAL
83
-140.59
-33.19
11
A
SER
2
-158.61
-23.77
11
A
HIS
3
58.55
146.95
11
A
ALA
82
-69.13
99.69
12
A
ALA
41
-131.69
-36.84
12
A
LYS
79
-145.14
-44.32
13
A
TYR
51
-99.72
-61.20
13
A
ALA
52
-140.93
25.24
14
A
ALA
52
55.92
12.49
NMR structure of ubiquitin-like domain of hHR23B
1
N
N
A
THR
25
A
THR
25
HELX_P
A
GLY
38
A
GLY
38
1
1
14
A
PRO
43
A
PRO
43
HELX_P
A
ALA
45
A
ALA
45
5
2
3
A
ALA
61
A
ALA
61
HELX_P
A
LYS
66
A
LYS
66
5
3
6
DNA BINDING PROTEIN
UBIQUITIN-LIKE, DNA BINDING PROTEIN
A
LYS
79
A
LYS
79
1
A
PRO
80
A
PRO
80
-11.20
A
THR
78
A
THR
78
4
A
LYS
79
A
LYS
79
-12.04
A
LYS
79
A
LYS
79
4
A
PRO
80
A
PRO
80
-6.56
A
SER
84
A
SER
84
13
A
THR
85
A
THR
85
-6.21
RD23B_HUMAN
UNP
1
1
P54727
MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV
ST
1
82
1P1A
4
85
P54727
A
1
4
85
1
cloning artifact
GLY
1
1P1A
A
P54727
UNP
1
1
cloning artifact
SER
2
1P1A
A
P54727
UNP
2
1
cloning artifact
HIS
3
1P1A
A
P54727
UNP
3
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
15
A
THR
15
A
ILE
20
A
ILE
20
A
MET
4
A
MET
4
A
THR
10
A
THR
10
A
PHE
72
A
PHE
72
A
VAL
77
A
VAL
77
A
GLN
47
A
GLN
47
A
TYR
51
A
TYR
51
A
LYS
54
A
LYS
54
A
ILE
55
A
ILE
55