1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ryu, K.S. Lee, K.J. Bae, S.H. Kim, B.K. Kim, K.A. Choi, B.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 278 36621 36627 10.1074/jbc.M304628200 12832454 Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a 2003 10.2210/pdb1p1a/pdb pdb_00001p1a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9524.032 UV excision repair protein RAD23 homolog B Ubiquitin-like domain 1 man polymer RAD23, hHR23B no no GSHMQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP KAVST GSHMQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP KAVST A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample hHR23B 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21 DE3 Plasmid pET15b database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-07-13 1 1 2008-04-29 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y PDBJ 2003-04-11 REL REL Distance Restraints From 2D D2O-NOESY, 3D 15N-NOESY-HSQC, Angle Restaints From Intensity-modulated 15N HSQC and Talos Chemical shift analysis structures with the lowest energy 60 14 CBCACONH, HNCACB, CCC-TOC-NNH, HCC-TOC-NNH, HNCO 3D_15N-separated_TOCSY, Intensity-modulated 15N HSQC 2D NOESY 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303 K 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303 K 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303 K Cyana-Automated NOE assignment, Torsion angle dynamics; Amber-Simulated annealing, Cyana output is the initial structure 1 closest to the average 2mM UbL domain 15N,13C; 50mM Sodium Phosphate Buffer with 100mM NaCl 92.5% H2O, 7.5% D2O 2mM UbL domain 15N; 50mM Sodium Phosphate Buffer with 100mM NaCl 92.5% H2O, 7.5% D2O 2mM UbL domain non-labeled; 50mM Sodium Phosphate Buffer with 100mM NaCl 100% D2O structure solution CYANA 1.0.6 refinement Amber 7 600 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A HIS 3 n 3 HIS 3 A MET 4 n 4 MET 4 A GLN 5 n 5 GLN 5 A VAL 6 n 6 VAL 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A LYS 9 n 9 LYS 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A GLN 12 n 12 GLN 12 A GLN 13 n 13 GLN 13 A GLN 14 n 14 GLN 14 A THR 15 n 15 THR 15 A PHE 16 n 16 PHE 16 A LYS 17 n 17 LYS 17 A ILE 18 n 18 ILE 18 A ASP 19 n 19 ASP 19 A ILE 20 n 20 ILE 20 A ASP 21 n 21 ASP 21 A PRO 22 n 22 PRO 22 A GLU 23 n 23 GLU 23 A GLU 24 n 24 GLU 24 A THR 25 n 25 THR 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A LYS 30 n 30 LYS 30 A GLU 31 n 31 GLU 31 A LYS 32 n 32 LYS 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A SER 35 n 35 SER 35 A GLU 36 n 36 GLU 36 A LYS 37 n 37 LYS 37 A GLY 38 n 38 GLY 38 A LYS 39 n 39 LYS 39 A ASP 40 n 40 ASP 40 A ALA 41 n 41 ALA 41 A PHE 42 n 42 PHE 42 A PRO 43 n 43 PRO 43 A VAL 44 n 44 VAL 44 A ALA 45 n 45 ALA 45 A GLY 46 n 46 GLY 46 A GLN 47 n 47 GLN 47 A LYS 48 n 48 LYS 48 A LEU 49 n 49 LEU 49 A ILE 50 n 50 ILE 50 A TYR 51 n 51 TYR 51 A ALA 52 n 52 ALA 52 A GLY 53 n 53 GLY 53 A LYS 54 n 54 LYS 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A ASN 57 n 57 ASN 57 A ASP 58 n 58 ASP 58 A ASP 59 n 59 ASP 59 A THR 60 n 60 THR 60 A ALA 61 n 61 ALA 61 A LEU 62 n 62 LEU 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A TYR 65 n 65 TYR 65 A LYS 66 n 66 LYS 66 A ILE 67 n 67 ILE 67 A ASP 68 n 68 ASP 68 A GLU 69 n 69 GLU 69 A LYS 70 n 70 LYS 70 A ASN 71 n 71 ASN 71 A PHE 72 n 72 PHE 72 A VAL 73 n 73 VAL 73 A VAL 74 n 74 VAL 74 A VAL 75 n 75 VAL 75 A MET 76 n 76 MET 76 A VAL 77 n 77 VAL 77 A THR 78 n 78 THR 78 A LYS 79 n 79 LYS 79 A PRO 80 n 80 PRO 80 A LYS 81 n 81 LYS 81 A ALA 82 n 82 ALA 82 A VAL 83 n 83 VAL 83 A SER 84 n 84 SER 84 A THR 85 n 85 THR 85 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 20 A O ILE 20 A N MET 4 A N MET 4 A N LYS 9 A N LYS 9 A O VAL 73 A O VAL 73 A O VAL 74 A O VAL 74 A N ILE 50 A N ILE 50 A N TYR 51 A N TYR 51 A O LYS 54 A O LYS 54 1 A LEU 11 -62.77 1.99 1 A TYR 51 -102.49 78.88 1 A LYS 79 112.67 -43.14 2 A SER 2 -142.99 39.58 2 A ALA 52 49.96 23.72 4 A HIS 3 60.26 163.21 4 A LYS 79 -149.06 -34.33 4 A LYS 81 58.67 -43.65 5 A LEU 11 -59.46 0.97 5 A ALA 52 49.51 25.37 5 A LYS 79 -12.14 112.99 6 A ALA 52 56.17 15.27 7 A LYS 79 -131.85 -47.17 8 A SER 2 -150.33 2.63 8 A LEU 11 -66.81 1.94 8 A VAL 83 -140.13 -11.26 9 A ALA 52 49.40 26.22 9 A VAL 83 -140.12 -1.94 10 A LEU 11 -63.37 7.30 10 A ALA 82 -68.41 99.93 10 A VAL 83 -140.59 -33.19 11 A SER 2 -158.61 -23.77 11 A HIS 3 58.55 146.95 11 A ALA 82 -69.13 99.69 12 A ALA 41 -131.69 -36.84 12 A LYS 79 -145.14 -44.32 13 A TYR 51 -99.72 -61.20 13 A ALA 52 -140.93 25.24 14 A ALA 52 55.92 12.49 NMR structure of ubiquitin-like domain of hHR23B 1 N N A THR 25 A THR 25 HELX_P A GLY 38 A GLY 38 1 1 14 A PRO 43 A PRO 43 HELX_P A ALA 45 A ALA 45 5 2 3 A ALA 61 A ALA 61 HELX_P A LYS 66 A LYS 66 5 3 6 DNA BINDING PROTEIN UBIQUITIN-LIKE, DNA BINDING PROTEIN A LYS 79 A LYS 79 1 A PRO 80 A PRO 80 -11.20 A THR 78 A THR 78 4 A LYS 79 A LYS 79 -12.04 A LYS 79 A LYS 79 4 A PRO 80 A PRO 80 -6.56 A SER 84 A SER 84 13 A THR 85 A THR 85 -6.21 RD23B_HUMAN UNP 1 1 P54727 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV ST 1 82 1P1A 4 85 P54727 A 1 4 85 1 cloning artifact GLY 1 1P1A A P54727 UNP 1 1 cloning artifact SER 2 1P1A A P54727 UNP 2 1 cloning artifact HIS 3 1P1A A P54727 UNP 3 5 anti-parallel parallel anti-parallel anti-parallel A THR 15 A THR 15 A ILE 20 A ILE 20 A MET 4 A MET 4 A THR 10 A THR 10 A PHE 72 A PHE 72 A VAL 77 A VAL 77 A GLN 47 A GLN 47 A TYR 51 A TYR 51 A LYS 54 A LYS 54 A ILE 55 A ILE 55