1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Weidler, M. Reinhard, C. Wieland, F.T. Roesch, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 271 401 408 10.1006/bbrc.2000.2511 10799309 Structure of the cytoplasmic domain of p23 in solution: implications for the formation of COPI vesicles. 2000 10.2210/pdb1p23/pdb pdb_00001p23 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1820.271 TRANSMEMBRANE PROTEIN TMP21 PRECURSOR CYTOPLASMIC DOMAIN 4 man polymer INTEGRAL MEMBRANE PROTEIN P23 no no CYLRRFFKAKKLIE CYLRRFFKAKKLIE A,B,C,D polypeptide(L) n n n n n n n n n n n n n n database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 2000-06-07 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-11-17 REL REL CHEMICALLY SYNTHESIZED. THE FRAGMENT (CYTOPLASMIC DOMAIN) OCCURS NATURALLY IN NEW ZEALAND WHITE RABBIT'S LIVER(TRANSMEMBRANE PROTEIN TMP21 PRECURSOR). sample ENERGY, AGREEMENT WITH EXPERIMENTAL DATA 100 10 NOESY COSY CLEAN-TOCSY 650 mM 3.60 10E+5 PA atm 280.00 K STRATEGY USED FOR NMR STRUCTURE CALCULATION: EXPERIMENTAL RESTRAINTS FOR THE STRUCTURE CALCULATIONS INITIALLY, FREQUENCY DEGENERATED NOESY CROSS -PEAKS WERE INCORPORATED INTO THE STRUCTURE CALCULATION AS 'AMBIGUOUS'. SUBSEQUENTLY, THE PROTON-PROTON DISTANCES IN THE CALCULATED STRUCTURES WERE DETERMINED USING THE PROGRAM 'BACKCALC_DB 2.0' (SOFTWARE SYMBIOSE, INC., BAYREUTH, GERMANY) AND COMPARED WITH THE COMBINATIONS OF DISTANCES POSSIBLE FOR EACH FREQUENCY DEGENERATED NOESY CROSS-PEAK. IF ONLY ONE OF THE POSSIBLE DISTANCE COMBINATIONS WAS FULFILLED IN MORE THAN 50% OF THE CALCULATED STRUCTURES, THE DISTANCE INFORMATION WAS USED IN FURTHER STRUCTURE CALCULATIONS. THIS PROCEDURE WAS REPEATED SEVERAL TIMES, LEADING TO A TOTAL OF 223 INTRARESIDUAL AND 249 INTERRESIDUAL NOE CONNECTIVITIES. STRUCTURE CALCULATIONS STRUCTURES CALCULATIONS WERE PERFORMED USING A MODIFIED AB INITIO SIMULATED ANNEALING PROTOCOL (NILGES, UNPUBLISHED) WITH X-PLOR V3.840. THE CALCULATION STRATEGY INCLUDES FLOATING ASSIGNMENT OF PROCHIRAL GROUPS AND A REDUCED PRESENTATION FOR NON- BONDED INTERACTIONS FOR PART OF THE CALCULATION TO INCREASE EFFICIENCY. A MORE DETAILED DESCRIPTION OF THE PROTOCOL IS GIVEN IN KHARRAT ET AL. (EMBO J. 14 (1995) 3572-84). STRUCTURE PARAMETERS WERE EXTRACTED FROM THE STANDARD FILES PARALLHDG.PRO AND TOPALLHDG.PRO OF X-PLOR V3.840. IN EACH ROUND OF THE STRUCTURE CALCULATION 100 STRUCTURES WERE CALCULATED. OF THE 100 STRUCTURES RESULTING FROM THE FINAL ROUND OF STRUCTURE CALCULATION, THOSE 30 STRUCTURES THAT SHOWED THE LOWEST TOTAL ENERGY VALUES WERE SELECTED FOR FURTHER CHARACTERIZATION. SIMULATED ANNEALING, RESTRAINED MOLECULAR DYNAMICS 1 BRUNGER refinement X-PLOR 3.840 structure solution NDEE 2.0 structure solution X-PLOR 600 Bruker DRX 600 CYS 1 n 1 CYS 1 A TYR 2 n 2 TYR 2 A LEU 3 n 3 LEU 3 A ARG 4 n 4 ARG 4 A ARG 5 n 5 ARG 5 A PHE 6 n 6 PHE 6 A PHE 7 n 7 PHE 7 A LYS 8 n 8 LYS 8 A ALA 9 n 9 ALA 9 A LYS 10 n 10 LYS 10 A LYS 11 n 11 LYS 11 A LEU 12 n 12 LEU 12 A ILE 13 n 13 ILE 13 A GLU 14 n 14 GLU 14 A CYS 1 n 1 CYS 1 B TYR 2 n 2 TYR 2 B LEU 3 n 3 LEU 3 B ARG 4 n 4 ARG 4 B ARG 5 n 5 ARG 5 B PHE 6 n 6 PHE 6 B PHE 7 n 7 PHE 7 B LYS 8 n 8 LYS 8 B ALA 9 n 9 ALA 9 B LYS 10 n 10 LYS 10 B LYS 11 n 11 LYS 11 B LEU 12 n 12 LEU 12 B ILE 13 n 13 ILE 13 B GLU 14 n 14 GLU 14 B CYS 1 n 1 CYS 1 C TYR 2 n 2 TYR 2 C LEU 3 n 3 LEU 3 C ARG 4 n 4 ARG 4 C ARG 5 n 5 ARG 5 C PHE 6 n 6 PHE 6 C PHE 7 n 7 PHE 7 C LYS 8 n 8 LYS 8 C ALA 9 n 9 ALA 9 C LYS 10 n 10 LYS 10 C LYS 11 n 11 LYS 11 C LEU 12 n 12 LEU 12 C ILE 13 n 13 ILE 13 C GLU 14 n 14 GLU 14 C CYS 1 n 1 CYS 1 D TYR 2 n 2 TYR 2 D LEU 3 n 3 LEU 3 D ARG 4 n 4 ARG 4 D ARG 5 n 5 ARG 5 D PHE 6 n 6 PHE 6 D PHE 7 n 7 PHE 7 D LYS 8 n 8 LYS 8 D ALA 9 n 9 ALA 9 D LYS 10 n 10 LYS 10 D LYS 11 n 11 LYS 11 D LEU 12 n 12 LEU 12 D ILE 13 n 13 ILE 13 D GLU 14 n 14 GLU 14 D author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H LEU PHE 3 7 1.43 1 B B O H LEU PHE 3 7 1.50 1 C C O H LYS ILE 10 13 1.51 1 B B O H LYS ILE 10 13 1.53 1 D D O H LEU PHE 3 7 1.55 1 A A O H LYS ILE 10 13 1.56 1 D D O H LYS ILE 10 13 1.58 2 C C O H LEU PHE 3 7 1.45 2 C C O H LYS ILE 10 13 1.47 2 B B O H LYS ILE 10 13 1.49 2 A A O H LYS ILE 10 13 1.52 2 D D O H LYS ILE 10 13 1.52 2 B B O H LEU PHE 3 7 1.53 2 B B O H TYR ARG 2 5 1.54 3 D D O H LEU PHE 3 7 1.41 3 B B O H LEU PHE 3 7 1.42 3 C C O H TYR PHE 2 6 1.48 3 D D O H TYR ARG 2 4 1.49 3 A A O H LEU PHE 3 7 1.49 3 D D O H LYS ILE 10 13 1.51 3 C C O H LEU PHE 3 7 1.52 3 A A O H LYS ILE 10 13 1.55 3 B B O H LYS ILE 10 13 1.59 4 C C O H LEU PHE 3 7 1.42 4 D D O H LYS ILE 10 13 1.47 4 C C O H LYS ILE 10 13 1.48 4 A A O H LYS ILE 10 13 1.52 4 B B O H LYS ILE 10 13 1.57 4 B B O H ALA LEU 9 12 1.58 5 D D O H LYS ILE 10 13 1.42 5 C C O H LYS ILE 10 13 1.45 5 B B O H TYR PHE 2 6 1.46 5 A A O H LEU PHE 3 7 1.49 5 D D O H LYS GLU 10 14 1.54 5 C C O H LEU PHE 3 7 1.56 5 A A O H LYS ILE 10 13 1.56 5 B B O H LEU PHE 3 7 1.60 6 C C O H LYS ILE 10 13 1.48 6 D D O H LYS ILE 10 13 1.49 6 B B O H LYS ILE 10 13 1.52 6 A A O H LYS ILE 10 13 1.59 6 D D O H LEU PHE 3 7 1.60 7 D D O H LYS ILE 10 13 1.45 7 A A O H LEU PHE 3 7 1.46 7 C C O H LYS ILE 10 13 1.47 7 B B O H LEU PHE 3 7 1.51 8 D D O H LYS ILE 10 13 1.46 8 A A O H TYR PHE 2 6 1.48 8 B B O H TYR PHE 2 6 1.49 8 B B O H LYS ILE 10 13 1.50 8 D D O H LYS GLU 10 14 1.51 8 C C O H LYS ILE 10 13 1.52 8 D D O H TYR ARG 2 5 1.52 8 A A O H LYS ILE 10 13 1.53 8 B B O H LEU PHE 3 7 1.54 8 A A O H LEU PHE 3 7 1.55 8 D D O H LEU PHE 3 7 1.57 9 A A O H LYS GLU 10 14 1.41 9 D D O H LYS ILE 10 13 1.47 9 B B O H LYS ILE 10 13 1.51 9 D D O H LEU PHE 3 7 1.53 9 D D O H TYR ARG 2 5 1.59 10 B B O H LYS GLU 10 14 1.41 10 C C O H TYR ARG 2 4 1.45 10 C C O H LYS ILE 10 13 1.46 10 A A O H LYS ILE 10 13 1.52 10 A A O H TYR ARG 2 5 1.52 10 D D O H LYS ILE 10 13 1.52 10 D D O H LEU PHE 3 6 1.53 10 B B O H TYR ARG 2 5 1.54 1 A ARG 4 0.263 SIDE CHAIN 1 A ARG 5 0.210 SIDE CHAIN 1 B ARG 4 0.234 SIDE CHAIN 1 B ARG 5 0.264 SIDE CHAIN 1 C ARG 4 0.309 SIDE CHAIN 1 D ARG 4 0.226 SIDE CHAIN 1 D ARG 5 0.200 SIDE CHAIN 2 A ARG 4 0.274 SIDE CHAIN 2 A ARG 5 0.225 SIDE CHAIN 2 B ARG 4 0.175 SIDE CHAIN 2 B ARG 5 0.229 SIDE CHAIN 2 C ARG 4 0.240 SIDE CHAIN 2 C ARG 5 0.317 SIDE CHAIN 2 D ARG 4 0.207 SIDE CHAIN 2 D ARG 5 0.307 SIDE CHAIN 3 B ARG 4 0.317 SIDE CHAIN 3 B ARG 5 0.190 SIDE CHAIN 3 C ARG 4 0.116 SIDE CHAIN 3 C ARG 5 0.201 SIDE CHAIN 3 D ARG 4 0.317 SIDE CHAIN 3 D ARG 5 0.268 SIDE CHAIN 4 A ARG 5 0.314 SIDE CHAIN 4 B ARG 4 0.315 SIDE CHAIN 4 B ARG 5 0.233 SIDE CHAIN 4 C ARG 4 0.296 SIDE CHAIN 4 D ARG 4 0.191 SIDE CHAIN 4 D ARG 5 0.316 SIDE CHAIN 5 A ARG 4 0.315 SIDE CHAIN 5 A ARG 5 0.127 SIDE CHAIN 5 B ARG 4 0.218 SIDE CHAIN 5 B ARG 5 0.255 SIDE CHAIN 5 C ARG 4 0.310 SIDE CHAIN 5 C ARG 5 0.309 SIDE CHAIN 5 D ARG 4 0.117 SIDE CHAIN 5 D ARG 5 0.205 SIDE CHAIN 6 A ARG 4 0.257 SIDE CHAIN 6 A ARG 5 0.318 SIDE CHAIN 6 B ARG 4 0.184 SIDE CHAIN 6 B ARG 5 0.277 SIDE CHAIN 6 C ARG 4 0.087 SIDE CHAIN 6 C ARG 5 0.249 SIDE CHAIN 6 D ARG 4 0.231 SIDE CHAIN 6 D ARG 5 0.177 SIDE CHAIN 7 A ARG 4 0.240 SIDE CHAIN 7 A ARG 5 0.240 SIDE CHAIN 7 B ARG 4 0.313 SIDE CHAIN 7 B ARG 5 0.301 SIDE CHAIN 7 C ARG 4 0.090 SIDE CHAIN 7 C ARG 5 0.260 SIDE CHAIN 7 D ARG 4 0.317 SIDE CHAIN 7 D ARG 5 0.257 SIDE CHAIN 8 A ARG 4 0.181 SIDE CHAIN 8 A ARG 5 0.266 SIDE CHAIN 8 B ARG 4 0.174 SIDE CHAIN 8 B ARG 5 0.261 SIDE CHAIN 8 C ARG 4 0.305 SIDE CHAIN 8 D ARG 5 0.271 SIDE CHAIN 9 A ARG 4 0.270 SIDE CHAIN 9 A ARG 5 0.233 SIDE CHAIN 9 B ARG 4 0.315 SIDE CHAIN 9 B ARG 5 0.317 SIDE CHAIN 9 C ARG 4 0.270 SIDE CHAIN 9 C ARG 5 0.307 SIDE CHAIN 9 D ARG 4 0.130 SIDE CHAIN 9 D ARG 5 0.313 SIDE CHAIN 10 A ARG 4 0.122 SIDE CHAIN 10 A ARG 5 0.304 SIDE CHAIN 10 B ARG 4 0.317 SIDE CHAIN 10 C ARG 4 0.140 SIDE CHAIN 10 C ARG 5 0.082 SIDE CHAIN 10 D ARG 4 0.290 SIDE CHAIN 10 D ARG 5 0.235 SIDE CHAIN 1 A ARG 4 -39.85 -38.88 1 A ILE 13 -144.49 46.74 1 B ILE 13 -150.98 49.20 1 C TYR 2 -172.26 -36.15 1 C ILE 13 -143.60 46.04 1 D TYR 2 -173.49 -35.41 1 D ILE 13 -148.95 47.30 2 A TYR 2 177.47 -33.11 2 A ILE 13 -147.29 47.54 2 C TYR 2 -163.44 -154.00 2 C LEU 3 63.86 -69.57 2 C ILE 13 -142.23 43.65 2 D ILE 13 -146.21 46.79 3 A ILE 13 -142.97 41.57 3 B TYR 2 -172.38 -34.24 3 B ILE 13 -146.13 46.92 3 C ILE 13 -147.94 45.81 3 D LEU 3 62.30 -64.64 3 D ILE 13 -148.89 46.58 4 A TYR 2 -178.31 -32.69 4 A ILE 13 -144.08 43.88 4 B TYR 2 82.76 -14.69 4 C TYR 2 -159.64 -152.52 4 C LEU 3 58.37 -77.85 4 D TYR 2 176.57 -34.27 4 D ILE 13 -149.28 47.06 5 A ILE 13 -147.38 46.41 5 B TYR 2 179.95 -30.34 5 B ILE 13 -161.79 47.80 5 C TYR 2 -149.88 -151.17 5 C LEU 3 60.21 -73.96 5 C ILE 13 -145.60 47.46 5 D LYS 11 -38.99 -33.28 5 D ILE 13 -146.59 -32.93 6 A TYR 2 174.67 -43.33 6 A ILE 13 -146.42 48.35 6 B ILE 13 -146.10 46.60 6 C TYR 2 -172.32 -31.92 6 C PHE 6 -92.29 -62.97 6 C ILE 13 -144.54 44.80 6 D TYR 2 177.36 -39.72 6 D ILE 13 -150.23 49.90 7 A TYR 2 -163.50 -99.71 7 A ILE 13 -142.54 44.00 7 B ILE 13 -151.02 45.25 7 C TYR 2 176.12 -30.55 7 C ILE 13 -146.64 46.98 7 D TYR 2 175.88 -32.14 7 D ILE 13 -143.81 44.21 8 A ILE 13 -140.14 45.20 8 B TYR 2 179.36 -30.68 8 B ILE 13 -147.18 48.78 8 C TYR 2 174.80 -40.03 8 C ILE 13 -145.66 44.25 8 D ILE 13 -139.48 -37.51 9 A LYS 11 -35.81 -30.86 9 B TYR 2 -162.24 -39.14 9 B ILE 13 -146.79 47.66 9 C TYR 2 -169.70 -40.87 9 D TYR 2 -147.68 -38.60 9 D ILE 13 -149.44 46.14 10 A ILE 13 -149.05 46.51 10 B LYS 11 -34.89 -31.96 10 C LEU 3 65.19 -51.35 10 C ILE 13 -147.15 50.00 10 D TYR 2 176.01 -31.60 10 D ILE 13 -151.04 48.94 model building X-PLOR 3.84 refinement X-PLOR 3.84 phasing X-PLOR 3.84 STRUCTURE OF THE DIMERIZED CYTOPLASMIC DOMAIN OF P23 IN SOLUTION, NMR, 10 STRUCTURES 1 N N 1 N N 1 N N 1 N N A LEU 3 A LEU 3 HELX_P A LYS 10 A LYS 10 1 1 8 B LEU 3 B LEU 3 HELX_P B LYS 10 B LYS 10 1 2 8 C LEU 3 C LEU 3 HELX_P C LYS 11 C LYS 11 1 3 9 D LEU 3 D LEU 3 HELX_P D LYS 10 D LYS 10 1 4 8 disulf 2.022 A CYS 1 A SG CYS 1 1_555 B CYS 1 B SG CYS 1 1_555 disulf 2.021 C CYS 1 C SG CYS 1 1_555 D CYS 1 D SG CYS 1 1_555 MEMBRANE PROTEIN TRANSPORT, PROTEIN TRANSPORT, TRANSMEMBRANE, GLYCOPROTEIN, VESICULAR TRANSPORT, COP, COATOMER, GOLGI STACK, SOLUTION STRUCTURE, P24 FAMILY, INTEGRAL MEMBRANE PROTEIN, MEMBRANE PROTEIN TMP21_RABIT UNP 1 1 Q28735 MSGWSGPLARRGPGPLALLFLFLLGPSSVLAISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSA GHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSES IVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLIE 207 219 1P23 2 14 Q28735 A 1 2 14 207 219 1P23 2 14 Q28735 B 1 2 14 207 219 1P23 2 14 Q28735 C 1 2 14 207 219 1P23 2 14 Q28735 D 1 2 14 1 P 1