0.014505 0.000000 0.000000 0.000000 0.014505 0.000000 0.000000 0.000000 0.018093 0.00000 0.00000 0.00000 Labiuk, S.L. Delbaere, L.T. Lee, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 40 90. 90. 90. 68.94 68.94 55.27 Co 2 58.933 COBALT (II) ION non-polymer C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N CO N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 N C N 47 R C Y 48 N N Y 49 N C Y 50 N N Y 51 N C N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N N Y 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N H N 75 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 8 715 720 10.1007/s00775-003-0473-4 14505075 Cobalt(II), nickel(II) and zinc(II) do not bind to intra-helical N(7) guanine positions in the B-form crystal structure of d(GGCGCC) 2003 10.2210/pdb1p24/pdb pdb_00001p24 110 1 CCD 2001-02-10 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.5088 1.0 14-BM-D APS 1.5088 SYNCHROTRON APS BEAMLINE 14-BM-D 1810.205 DNA (5'-D(*GP*GP*CP*GP*CP*C)-3') 5 syn polymer 58.933 COBALT (II) ION 5 syn non-polymer 18.015 water 25 nat water no no (DG)(DG)(DC)(DG)(DC)(DC) GGCGCC A,B,C,D,E polydeoxyribonucleotide n n n n n n 1 3.72 66.7 VAPOR DIFFUSION, HANGING DROP 8.1 DNA, Taps-HCl, CoCl2, glycerol, MPD, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Taps-HCl 1 CoCl2 1 glycerol 1 MPD 1 glycerol 2 MPD 2 -3.214 1 19 B 7 C 18 1.783 B_DG7:DC18_C 1 -4.045 -0.733 0.221 -0.300 -2.119 1 19 B 8 C 17 -10.406 B_DG8:DC17_C 2 -0.878 -1.372 0.023 -0.696 -3.901 1 19 B 9 C 16 -5.686 B_DC9:DG16_C 3 2.063 -0.620 0.102 0.098 6.015 1 19 B 10 C 15 -7.632 B_DG10:DC15_C 4 -1.183 -0.110 0.411 -0.258 5.331 1 19 B 11 C 14 -5.814 B_DC11:DG14_C 5 0.048 0.445 0.223 -0.362 -12.390 1 B 12 C 13 -13.917 B_DC12:DG13_C 6 -13.486 -1.110 0.476 0.062 -7.507 1 19 D 19 E 30 -0.220 D_DG19:DC30_E 7 0.645 0.254 0.037 -0.266 -2.388 1 19 D 20 E 29 -9.452 D_DG20:DC29_E 8 8.991 -0.217 -0.411 -0.565 4.519 1 19 D 21 E 28 -7.586 D_DC21:DG28_E 9 -7.927 -0.151 -0.128 -0.249 0.518 1 19 D 22 E 27 1.207 D_DG22:DC27_E 10 -1.644 -0.465 0.216 -0.377 -4.591 1 19 D 23 E 26 -4.606 D_DC23:DG26_E 11 6.195 0.096 0.315 -0.527 3.226 1 19 D 24 E 25 -6.347 D_DC24:DG25_E 12 -0.328 0.041 0.128 -0.236 10.764 1 19 A 1 A 6 -0.808 A_DG1:DC6_A 13 -5.021 -0.244 0.819 -0.136 -1.746 1 19 A 2 A 5 -3.354 A_DG2:DC5_A 14 -3.960 0.032 0.099 -0.275 -9.907 1 19 A 3 A 4 2.392 A_DC3:DG4_A 15 9.925 0.580 0.126 -0.514 9.907 1 19 A 4 A 3 2.392 A_DG4:DC3_A 16 9.925 -0.580 0.126 -0.514 1.746 1 19 A 5 A 2 -3.354 A_DC5:DG2_A 17 -3.960 -0.032 0.099 -0.275 -10.764 1 19 A 6 A 1 -0.808 A_DC6:DG1_A 18 -5.021 0.244 0.819 -0.136 3.314 32.215 B B 7 8 -2.385 C C 18 17 3.281 -1.323 -0.815 -0.611 BB_DG7DG8:DC17DC18_CC 1 -0.457 0.824 32.185 -0.863 1.387 3.148 34.946 B B 8 9 9.515 C C 17 16 3.278 5.686 1.007 -0.908 BB_DG8DC9:DG16DC17_CC 2 2.137 -3.576 34.430 -2.363 -1.357 2.969 43.098 B B 9 10 3.696 C C 16 15 2.948 2.713 -0.061 0.429 BB_DC9DG10:DC15DG16_CC 3 -0.640 0.872 43.012 0.342 0.027 3.359 40.326 B B 10 11 3.718 C C 15 14 3.427 2.560 -0.387 -0.468 BB_DG10DC11:DG14DC15_CC 4 2.775 -4.031 40.156 -0.978 0.887 2.989 24.241 B B 11 12 22.636 C C 14 13 3.663 9.269 0.188 -1.078 BB_DC11DC12:DG13DG14_CC 5 0.657 -1.603 22.414 -5.672 -0.228 3.353 -19.472 B D 12 19 13.159 C E 13 30 3.333 -4.412 0.019 0.476 BD_DC12DG19:DC30DG13_EC 6 0.576 1.717 -18.961 0.842 0.350 2.861 33.770 D D 19 20 4.763 E E 30 29 3.025 2.755 -0.762 -0.269 DD_DG19DG20:DC29DC30_EE 7 4.763 -8.233 33.332 -0.868 2.011 2.892 34.376 D D 20 21 13.814 E E 29 28 2.963 8.092 0.769 -0.024 DD_DG20DC21:DG28DC29_EE 8 0.619 -1.057 33.432 -1.189 -1.214 3.384 34.028 D D 21 22 9.207 E E 28 27 3.527 5.360 0.573 -0.237 DD_DC21DG22:DC27DG28_EE 9 -3.128 5.374 33.474 -1.316 -1.511 3.198 39.079 D D 22 23 8.876 E E 27 26 3.256 5.905 -0.937 -0.710 DD_DG22DC23:DG26DC27_EE 10 -4.227 6.353 38.424 -1.768 0.895 3.211 27.621 D D 23 24 -3.798 E E 26 25 3.189 -1.810 0.089 -0.484 DD_DC23DC24:DG25DG26_EE 11 2.153 -4.516 27.481 -0.581 0.328 3.536 37.185 A A 1 2 4.477 A A 6 5 3.629 2.844 -0.226 -0.276 AA_DG1DG2:DC5DC6_AA 12 5.148 -8.105 36.733 -0.850 1.110 3.345 31.334 A A 2 3 11.488 A A 5 4 3.532 6.165 -0.036 -0.628 AA_DG2DC3:DG4DC5_AA 13 -0.936 1.744 30.723 -2.397 -0.121 2.653 30.131 A A 3 4 7.813 A A 4 3 2.696 4.050 0.000 -0.151 AA_DC3DG4:DC3DG4_AA 14 0.000 0.000 29.863 -0.969 0.000 3.345 31.334 A A 4 5 11.488 A A 3 2 3.532 6.165 0.036 -0.628 AA_DG4DC5:DG2DC3_AA 15 0.936 -1.744 30.723 -2.397 0.121 3.536 37.185 A A 5 6 4.477 A A 2 1 3.629 2.844 0.226 -0.276 AA_DC5DC6:DG1DG2_AA 16 -5.148 8.105 36.733 -0.850 -1.110 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2003-12-09 1 1 2008-04-29 1 2 2011-07-13 1 3 2024-02-14 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-04-14 REL REL CO COBALT (II) ION HOH water Synthesized by AlphaDNA (Quebec, PQ, Canada) sample 1F6C NDB ENTRY BD0040 PDB experimental model CO 101 2 CO CO 101 A CO 102 2 CO CO 102 B CO 103 2 CO CO 103 C CO 104 2 CO CO 104 D CO 105 2 CO CO 105 E HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 B HOH 207 3 HOH HOH 207 B HOH 208 3 HOH HOH 208 B HOH 209 3 HOH HOH 209 B HOH 210 3 HOH HOH 210 B HOH 211 3 HOH HOH 211 C HOH 212 3 HOH HOH 212 C HOH 213 3 HOH HOH 213 C HOH 214 3 HOH HOH 214 C HOH 215 3 HOH HOH 215 C HOH 216 3 HOH HOH 216 D HOH 217 3 HOH HOH 217 D HOH 218 3 HOH HOH 218 D HOH 219 3 HOH HOH 219 D HOH 220 3 HOH HOH 220 D HOH 221 3 HOH HOH 221 E HOH 222 3 HOH HOH 222 E HOH 223 3 HOH HOH 223 E HOH 224 3 HOH HOH 224 E HOH 225 3 HOH HOH 225 E G 1 n 1 DG 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A C 6 n 6 DC 6 A G 7 n 1 DG 7 B G 8 n 2 DG 8 B C 9 n 3 DC 9 B G 10 n 4 DG 10 B C 11 n 5 DC 11 B C 12 n 6 DC 12 B G 13 n 1 DG 13 C G 14 n 2 DG 14 C C 15 n 3 DC 15 C G 16 n 4 DG 16 C C 17 n 5 DC 17 C C 18 n 6 DC 18 C G 19 n 1 DG 19 D G 20 n 2 DG 20 D C 21 n 3 DC 21 D G 22 n 4 DG 22 D C 23 n 5 DC 23 D C 24 n 6 DC 24 D G 25 n 1 DG 25 E G 26 n 2 DG 26 E C 27 n 3 DC 27 E G 28 n 4 DG 28 E C 29 n 5 DC 29 E C 30 n 6 DC 30 E author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 A HOH 201 K O HOH 1_555 90.5 A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 A HOH 202 K O HOH 1_555 90.4 A HOH 201 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 202 K O HOH 1_555 90.7 A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 A HOH 203 K O HOH 1_555 89.9 A HOH 201 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 203 K O HOH 1_555 175.0 A HOH 202 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 203 K O HOH 1_555 84.3 A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 A HOH 204 K O HOH 1_555 90.5 A HOH 201 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 204 K O HOH 1_555 92.6 A HOH 202 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 204 K O HOH 1_555 176.6 A HOH 203 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 204 K O HOH 1_555 92.4 A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 179.5 A HOH 201 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 89.3 A HOH 202 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 90.0 A HOH 203 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 90.4 A HOH 204 K O HOH 1_555 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 89.1 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 B HOH 206 L O HOH 1_555 90.4 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 B HOH 207 L O HOH 1_555 88.9 B HOH 206 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 207 L O HOH 1_555 92.6 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 B HOH 208 L O HOH 1_555 90.0 B HOH 206 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 208 L O HOH 1_555 178.7 B HOH 207 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 208 L O HOH 1_555 86.1 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 B HOH 209 L O HOH 1_555 89.6 B HOH 206 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 209 L O HOH 1_555 90.8 B HOH 207 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 209 L O HOH 1_555 176.3 B HOH 208 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 209 L O HOH 1_555 90.5 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 179.7 B HOH 206 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 89.7 B HOH 207 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 91.4 B HOH 208 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 89.9 B HOH 209 L O HOH 1_555 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 90.0 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 C HOH 211 M O HOH 1_555 90.1 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 C HOH 212 M O HOH 1_555 89.7 C HOH 211 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 212 M O HOH 1_555 94.1 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 C HOH 213 M O HOH 1_555 90.4 C HOH 211 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 213 M O HOH 1_555 172.1 C HOH 212 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 213 M O HOH 1_555 93.7 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 C HOH 214 M O HOH 1_555 89.5 C HOH 211 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 214 M O HOH 1_555 85.8 C HOH 212 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 214 M O HOH 1_555 179.2 C HOH 213 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 214 M O HOH 1_555 86.3 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 178.5 C HOH 211 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 90.3 C HOH 212 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 88.8 C HOH 213 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 89.4 C HOH 214 M O HOH 1_555 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 92.0 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 D HOH 216 N O HOH 1_555 90.6 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 D HOH 217 N O HOH 1_555 90.2 D HOH 216 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 217 N O HOH 1_555 93.0 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 D HOH 218 N O HOH 1_555 90.3 D HOH 216 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 218 N O HOH 1_555 176.9 D HOH 217 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 218 N O HOH 1_555 84.0 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 D HOH 219 N O HOH 1_555 89.2 D HOH 216 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 219 N O HOH 1_555 88.8 D HOH 217 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 219 N O HOH 1_555 178.1 D HOH 218 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 219 N O HOH 1_555 94.1 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 179.4 D HOH 216 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 89.3 D HOH 217 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 89.2 D HOH 218 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 89.8 D HOH 219 N O HOH 1_555 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 91.4 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 E HOH 221 O O HOH 1_555 90.3 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 E HOH 222 O O HOH 1_555 90.3 E HOH 221 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 222 O O HOH 1_555 90.3 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 E HOH 223 O O HOH 1_555 89.7 E HOH 221 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 223 O O HOH 1_555 172.9 E HOH 222 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 223 O O HOH 1_555 96.8 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 E HOH 224 O O HOH 1_555 92.0 E HOH 221 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 224 O O HOH 1_555 85.3 E HOH 222 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 224 O O HOH 1_555 175.1 E HOH 223 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 224 O O HOH 1_555 87.6 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 178.7 E HOH 221 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 88.8 E HOH 222 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 90.6 E HOH 223 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 91.1 E HOH 224 O O HOH 1_555 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 87.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 55.2700000000 1 -2.52 0.40 106.40 103.88 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 2.44 0.40 105.40 107.84 A A A N9 C4 C5 DG DG DG 1 1 1 N 1 -5.20 0.80 105.90 100.70 A A A O4' C1' C2' DC DC DC 3 3 3 N 1 -5.64 0.70 121.90 116.26 A A A N3 C2 O2 DC DC DC 3 3 3 N 1 4.96 0.70 110.30 115.26 A A A C1' O4' C4' DG DG DG 4 4 4 N 1 -5.44 0.70 102.20 96.76 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 -7.97 0.80 105.90 97.93 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 3.95 0.50 113.10 117.05 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 -3.82 0.40 106.40 102.58 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 7.56 0.30 108.30 115.86 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 3.67 0.60 118.90 122.57 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 10.62 0.30 108.30 118.92 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 4.37 0.60 118.90 123.27 A A A N1 C2 O2 DC DC DC 6 6 6 N 1 3.63 0.60 106.00 109.63 B B B O4' C4' C3' DG DG DG 7 7 7 N 1 -4.88 0.70 102.20 97.32 B B B C4' C3' C2' DG DG DG 7 7 7 N 1 2.23 0.30 108.30 110.53 B B B O4' C1' N9 DG DG DG 7 7 7 N 1 -2.63 0.40 106.40 103.77 B B B C8 N9 C4 DG DG DG 7 7 7 N 1 5.10 0.30 108.30 113.40 B B B O4' C1' N9 DG DG DG 8 8 8 N 1 -3.09 0.50 104.30 101.21 B B B C5 N7 C8 DG DG DG 8 8 8 N 1 10.49 0.30 108.30 118.79 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 5.38 0.30 108.30 113.68 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 -4.59 0.70 108.00 103.41 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 5.23 0.60 118.90 124.13 B B B N1 C2 O2 DC DC DC 11 11 11 N 1 -9.84 1.60 120.90 111.06 B B B P O5' C5' DC DC DC 12 12 12 N 1 10.64 1.40 114.30 124.94 B B B N1 C1' C2' DC DC DC 12 12 12 N 1 11.32 0.30 108.30 119.62 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 3.38 0.30 108.30 111.68 C C C O4' C1' N9 DG DG DG 13 13 13 N 1 -2.58 0.40 106.40 103.82 C C C C8 N9 C4 DG DG DG 13 13 13 N 1 -3.49 0.50 104.30 100.81 C C C C5 N7 C8 DG DG DG 14 14 14 N 1 3.45 0.50 113.10 116.55 C C C N7 C8 N9 DG DG DG 14 14 14 N 1 -2.45 0.40 106.40 103.95 C C C C8 N9 C4 DG DG DG 14 14 14 N 1 7.05 0.30 108.30 115.35 C C C O4' C1' N1 DC DC DC 15 15 15 N 1 4.90 0.60 118.90 123.80 C C C N1 C2 O2 DC DC DC 15 15 15 N 1 3.00 0.30 108.30 111.30 C C C O4' C1' N9 DG DG DG 16 16 16 N 1 -2.56 0.40 106.40 103.84 C C C C8 N9 C4 DG DG DG 16 16 16 N 1 5.66 0.60 118.90 124.56 C C C N1 C2 O2 DC DC DC 17 17 17 N 1 -3.07 0.50 104.30 101.23 D D D C5 N7 C8 DG DG DG 19 19 19 N 1 4.75 0.50 113.10 117.85 D D D N7 C8 N9 DG DG DG 19 19 19 N 1 -2.85 0.40 106.40 103.55 D D D C8 N9 C4 DG DG DG 19 19 19 N 1 -3.14 0.50 104.30 101.16 D D D C5 N7 C8 DG DG DG 20 20 20 N 1 3.29 0.50 113.10 116.39 D D D N7 C8 N9 DG DG DG 20 20 20 N 1 3.97 0.30 108.30 112.27 D D D O4' C1' N1 DC DC DC 21 21 21 N 1 7.98 0.30 108.30 116.28 D D D O4' C1' N9 DG DG DG 22 22 22 N 1 3.69 0.50 113.10 116.79 D D D N7 C8 N9 DG DG DG 22 22 22 N 1 -3.06 0.40 106.40 103.34 D D D C8 N9 C4 DG DG DG 22 22 22 N 1 -5.36 0.70 108.00 102.64 D D D O4' C1' N1 DC DC DC 23 23 23 N 1 6.39 0.60 118.90 125.29 D D D N1 C2 O2 DC DC DC 23 23 23 N 1 -5.01 0.70 121.90 116.89 D D D N3 C2 O2 DC DC DC 23 23 23 N 1 16.33 0.30 108.30 124.63 D D D O4' C1' N1 DC DC DC 24 24 24 N 1 5.07 0.60 118.90 123.97 D D D N1 C2 O2 DC DC DC 24 24 24 N 1 -4.91 0.70 121.90 116.99 D D D N3 C2 O2 DC DC DC 24 24 24 N 1 -4.79 0.70 102.20 97.41 E E E C4' C3' C2' DG DG DG 25 25 25 N 1 4.06 0.50 113.10 117.16 E E E N7 C8 N9 DG DG DG 25 25 25 N 1 -2.63 0.40 106.40 103.77 E E E C8 N9 C4 DG DG DG 25 25 25 N 1 4.57 0.30 108.30 112.87 E E E O4' C1' N9 DG DG DG 26 26 26 N 1 -3.91 0.50 104.30 100.39 E E E C5 N7 C8 DG DG DG 26 26 26 N 1 4.17 0.50 113.10 117.27 E E E N7 C8 N9 DG DG DG 26 26 26 N 1 -3.16 0.40 106.40 103.24 E E E C8 N9 C4 DG DG DG 26 26 26 N 1 3.29 0.30 108.30 111.59 E E E O4' C1' N1 DC DC DC 27 27 27 N 1 3.94 0.60 118.90 122.84 E E E N1 C2 O2 DC DC DC 27 27 27 N 1 8.11 0.30 108.30 116.41 E E E O4' C1' N9 DG DG DG 28 28 28 N 1 3.31 0.50 113.10 116.41 E E E N7 C8 N9 DG DG DG 28 28 28 N 1 -2.45 0.40 106.40 103.95 E E E C8 N9 C4 DG DG DG 28 28 28 N 1 4.76 0.30 108.30 113.06 E E E O4' C1' N1 DC DC DC 29 29 29 N 1 5.70 0.60 118.90 124.60 E E E N1 C2 O2 DC DC DC 29 29 29 N 1 -4.50 0.70 121.90 117.40 E E E N3 C2 O2 DC DC DC 29 29 29 N 1 5.86 0.30 108.30 114.16 E E E O4' C1' N1 DC DC DC 30 30 30 N 1 A A P O5' DG DG 2 2 0.076 0.010 1.593 1.669 N 1 A A C5' C4' DG DG 2 2 0.052 0.007 1.512 1.564 N 1 A A C4' C3' DG DG 4 4 -0.079 0.010 1.521 1.442 N 37.9 0.286 0.227 0.233 0.23 3.02 15.0 206 2701 2227 9.0 random 1 grouped B values THROUGHOUT 2.0 MOLECULAR REPLACEMENT NDB ENTRY BD0040 3.02 15.0 25 970 5 940 0 0.013 3.831 32.142 1.280 20.8 3.02 43. 1P24 2731 2731 0.0 0.0 0.11 1 22.3 5.9 94.8 3.02 3.15 3.1 0.51 3.8 69.9 data reduction DENZO data scaling SCALEPACK model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR Crystal structure of cobalt(II)-d(GGCGCC)2 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N metalc 2.097 A DG 1 A N7 DG 1 1_555 A CO 101 F CO CO 1_555 metalc 2.117 A CO 101 F CO CO 1_555 A HOH 201 K O HOH 1_555 metalc 2.112 A CO 101 F CO CO 1_555 A HOH 202 K O HOH 1_555 metalc 2.137 A CO 101 F CO CO 1_555 A HOH 203 K O HOH 1_555 metalc 2.127 A CO 101 F CO CO 1_555 A HOH 204 K O HOH 1_555 metalc 2.117 A CO 101 F CO CO 1_555 A HOH 205 K O HOH 1_555 metalc 2.093 B DG 7 B N7 DG 1 1_555 B CO 102 G CO CO 1_555 metalc 2.133 B CO 102 G CO CO 1_555 B HOH 206 L O HOH 1_555 metalc 2.134 B CO 102 G CO CO 1_555 B HOH 207 L O HOH 1_555 metalc 2.120 B CO 102 G CO CO 1_555 B HOH 208 L O HOH 1_555 metalc 2.130 B CO 102 G CO CO 1_555 B HOH 209 L O HOH 1_555 metalc 2.136 B CO 102 G CO CO 1_555 B HOH 210 L O HOH 1_555 metalc 2.103 C DG 13 C N7 DG 1 1_555 C CO 103 H CO CO 1_555 metalc 2.123 C CO 103 H CO CO 1_555 C HOH 211 M O HOH 1_555 metalc 2.121 C CO 103 H CO CO 1_555 C HOH 212 M O HOH 1_555 metalc 2.133 C CO 103 H CO CO 1_555 C HOH 213 M O HOH 1_555 metalc 2.129 C CO 103 H CO CO 1_555 C HOH 214 M O HOH 1_555 metalc 2.125 C CO 103 H CO CO 1_555 C HOH 215 M O HOH 1_555 metalc 2.094 D DG 19 D N7 DG 1 1_555 D CO 104 I CO CO 1_555 metalc 2.117 D CO 104 I CO CO 1_555 D HOH 216 N O HOH 1_555 metalc 2.117 D CO 104 I CO CO 1_555 D HOH 217 N O HOH 1_555 metalc 2.142 D CO 104 I CO CO 1_555 D HOH 218 N O HOH 1_555 metalc 2.139 D CO 104 I CO CO 1_555 D HOH 219 N O HOH 1_555 metalc 2.136 D CO 104 I CO CO 1_555 D HOH 220 N O HOH 1_555 metalc 2.162 E DG 25 E N7 DG 1 1_555 E CO 105 J CO CO 1_555 metalc 2.131 E CO 105 J CO CO 1_555 E HOH 221 O O HOH 1_555 metalc 2.134 E CO 105 J CO CO 1_555 E HOH 222 O O HOH 1_555 metalc 2.124 E CO 105 J CO CO 1_555 E HOH 223 O O HOH 1_555 metalc 2.116 E CO 105 J CO CO 1_555 E HOH 224 O O HOH 1_555 metalc 2.121 E CO 105 J CO CO 1_555 E HOH 225 O O HOH 1_555 hydrog WATSON-CRICK B DG 7 B N1 DG 1 1_555 C DC 18 C N3 DC 6 1_555 hydrog WATSON-CRICK B DG 7 B N2 DG 1 1_555 C DC 18 C O2 DC 6 1_555 hydrog WATSON-CRICK B DG 7 B O6 DG 1 1_555 C DC 18 C N4 DC 6 1_555 hydrog WATSON-CRICK B DG 8 B N1 DG 2 1_555 C DC 17 C N3 DC 5 1_555 hydrog WATSON-CRICK B DG 8 B N2 DG 2 1_555 C DC 17 C O2 DC 5 1_555 hydrog WATSON-CRICK B DG 8 B O6 DG 2 1_555 C DC 17 C N4 DC 5 1_555 hydrog WATSON-CRICK B DC 9 B N3 DC 3 1_555 C DG 16 C N1 DG 4 1_555 hydrog WATSON-CRICK B DC 9 B N4 DC 3 1_555 C DG 16 C O6 DG 4 1_555 hydrog WATSON-CRICK B DC 9 B O2 DC 3 1_555 C DG 16 C N2 DG 4 1_555 hydrog WATSON-CRICK B DG 10 B N1 DG 4 1_555 C DC 15 C N3 DC 3 1_555 hydrog WATSON-CRICK B DG 10 B N2 DG 4 1_555 C DC 15 C O2 DC 3 1_555 hydrog WATSON-CRICK B DG 10 B O6 DG 4 1_555 C DC 15 C N4 DC 3 1_555 hydrog WATSON-CRICK B DC 11 B N3 DC 5 1_555 C DG 14 C N1 DG 2 1_555 hydrog WATSON-CRICK B DC 11 B N4 DC 5 1_555 C DG 14 C O6 DG 2 1_555 hydrog WATSON-CRICK B DC 11 B O2 DC 5 1_555 C DG 14 C N2 DG 2 1_555 hydrog DC-DG PAIR B DC 12 B N4 DC 6 1_555 C DG 13 C O6 DG 1 1_555 hydrog WATSON-CRICK D DG 19 D N1 DG 1 1_555 E DC 30 E N3 DC 6 1_555 hydrog WATSON-CRICK D DG 19 D N2 DG 1 1_555 E DC 30 E O2 DC 6 1_555 hydrog WATSON-CRICK D DG 19 D O6 DG 1 1_555 E DC 30 E N4 DC 6 1_555 hydrog WATSON-CRICK D DG 20 D N1 DG 2 1_555 E DC 29 E N3 DC 5 1_555 hydrog WATSON-CRICK D DG 20 D N2 DG 2 1_555 E DC 29 E O2 DC 5 1_555 hydrog WATSON-CRICK D DG 20 D O6 DG 2 1_555 E DC 29 E N4 DC 5 1_555 hydrog WATSON-CRICK D DC 21 D N3 DC 3 1_555 E DG 28 E N1 DG 4 1_555 hydrog WATSON-CRICK D DC 21 D N4 DC 3 1_555 E DG 28 E O6 DG 4 1_555 hydrog WATSON-CRICK D DC 21 D O2 DC 3 1_555 E DG 28 E N2 DG 4 1_555 hydrog WATSON-CRICK D DG 22 D N1 DG 4 1_555 E DC 27 E N3 DC 3 1_555 hydrog WATSON-CRICK D DG 22 D N2 DG 4 1_555 E DC 27 E O2 DC 3 1_555 hydrog WATSON-CRICK D DG 22 D O6 DG 4 1_555 E DC 27 E N4 DC 3 1_555 hydrog WATSON-CRICK D DC 23 D N3 DC 5 1_555 E DG 26 E N1 DG 2 1_555 hydrog WATSON-CRICK D DC 23 D N4 DC 5 1_555 E DG 26 E O6 DG 2 1_555 hydrog WATSON-CRICK D DC 23 D O2 DC 5 1_555 E DG 26 E N2 DG 2 1_555 hydrog WATSON-CRICK D DC 24 D N3 DC 6 1_555 E DG 25 E N1 DG 1 1_555 hydrog WATSON-CRICK D DC 24 D N4 DC 6 1_555 E DG 25 E O6 DG 1 1_555 hydrog WATSON-CRICK D DC 24 D O2 DC 6 1_555 E DG 25 E N2 DG 1 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 6 A N3 DC 6 7_556 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 6 A O2 DC 6 7_556 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 6 A N4 DC 6 7_556 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 7_556 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 7_556 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 7_556 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 4 A N1 DG 4 7_556 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 4 A O6 DG 4 7_556 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 4 A N2 DG 4 7_556 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 3 A N3 DC 3 7_556 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 3 A O2 DC 3 7_556 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 3 A N4 DC 3 7_556 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 7_556 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 7_556 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 7_556 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 1 A N1 DG 1 7_556 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 1 A O6 DG 1 7_556 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 1 A N2 DG 1 7_556 DNA B-DNA, cobalt binding, DNA 1P24 PDB 1 1P24 1 6 1P24 1 6 1P24 A 1 1 6 7 12 1P24 7 12 1P24 B 1 1 6 13 18 1P24 13 18 1P24 C 1 1 6 19 24 1P24 19 24 1P24 D 1 1 6 25 30 1P24 25 30 1P24 E 1 1 6 BINDING SITE FOR RESIDUE CO A 101 A CO 101 Software 6 BINDING SITE FOR RESIDUE CO B 102 B CO 102 Software 6 BINDING SITE FOR RESIDUE CO C 103 C CO 103 Software 6 BINDING SITE FOR RESIDUE CO D 104 D CO 104 Software 6 BINDING SITE FOR RESIDUE CO E 105 E CO 105 Software 7 A DG 1 A DG 1 6 1_555 A HOH 201 K HOH 6 1_555 A HOH 202 K HOH 6 1_555 A HOH 203 K HOH 6 1_555 A HOH 204 K HOH 6 1_555 A HOH 205 K HOH 6 1_555 B DG 7 B DG 1 6 1_555 B HOH 206 L HOH 6 1_555 B HOH 207 L HOH 6 1_555 B HOH 208 L HOH 6 1_555 B HOH 209 L HOH 6 1_555 B HOH 210 L HOH 6 1_555 C DG 13 C DG 1 6 1_555 C HOH 211 M HOH 6 1_555 C HOH 212 M HOH 6 1_555 C HOH 213 M HOH 6 1_555 C HOH 214 M HOH 6 1_555 C HOH 215 M HOH 6 1_555 D DG 19 D DG 1 6 1_555 D HOH 216 N HOH 6 1_555 D HOH 217 N HOH 6 1_555 D HOH 218 N HOH 6 1_555 D HOH 219 N HOH 6 1_555 D HOH 220 N HOH 6 1_555 A DC 3 A DC 3 7 3_555 E DG 25 E DG 1 7 1_555 E HOH 221 O HOH 7 1_555 E HOH 222 O HOH 7 1_555 E HOH 223 O HOH 7 1_555 E HOH 224 O HOH 7 1_555 E HOH 225 O HOH 7 1_555 92 tetragonal P 41 21 2