.014323 .008269 0.000000 0.000000 .016538 0.000000 0.000000 0.000000 .014780 0.00000 0.00000 0.00000 SEE REMARK 8. SEE REMARK 4. Dijkstra, B.W. Renetseder, R. Kalk, K.H. Hol, W.G.J. Drenth, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 69.820 69.820 67.660 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 168 163 179 10.1016/S0022-2836(83)80328-3 6876174 Structure of porcine pancreatic phospholipase A2 at 2.6 A resolution and comparison with bovine phospholipase A2. 1983 DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 38 793 The Structure of Bovine Pancreatic Prophospholipase A2 at 3.0 Angstroms Resolution 1982 UK J.Mol.Biol. JMOBAK 0070 0022-2836 147 97 Structure of Bovine Pancreatic Phospholipase A2 at 1.7 Angstroms Resolution 1981 UK Nature NATUAS 0006 0028-0836 289 604 Active Site and Catalytic Mechanism of Phospholipase A2 1981 UK J.Mol.Biol. JMOBAK 0070 0022-2836 124 53 Three-Dimensional Structure and Disulfide Bond Connections in Bovine Pancreatic Phospholipase A2 1978 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 14009.714 PHOSPHOLIPASE A2 3.1.1.4 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer 18.015 water 5 nat water no no ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNT EITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNT EITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pig Sus sample 9823 Sus scrofa 3.40 63.79 pdbx_database_status struct_conf struct_conf_type repository Initial release Version format compliance Derived calculations Version format compliance Derived calculations Other 1 0 1983-09-15 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1983-06-27 REL CA CALCIUM ION HOH water THE TYPE CLASSIFICATIONS GIVEN IN THE REMARK FIELD OF THE TURN RECORDS BELOW FOLLOWS THE NOMENCLATURE OF CRAWFORD ET AL. (PROC.NAT.ACAD.SCI.USA, V. 76, P. 2551, 1973). CA 1 2 CA CA 125 A CA 2 2 CA CA 126 A HOH 3 3 HOH HOH 127 A HOH 4 3 HOH HOH 128 A HOH 5 3 HOH HOH 129 A HOH 6 3 HOH HOH 130 A HOH 7 3 HOH HOH 131 A ALA 1 n 1 ALA 1 A LEU 2 n 2 LEU 2 A TRP 3 n 3 TRP 3 A GLN 4 n 4 GLN 4 A PHE 5 n 5 PHE 5 A ARG 6 n 6 ARG 6 A SER 7 n 7 SER 7 A MET 8 n 8 MET 8 A ILE 9 n 9 ILE 9 A LYS 10 n 10 LYS 10 A CYS 11 n 11 CYS 11 A ALA 12 n 12 ALA 12 A ILE 13 n 13 ILE 13 A PRO 14 n 14 PRO 14 A GLY 15 n 15 GLY 15 A SER 16 n 16 SER 16 A HIS 17 n 17 HIS 17 A PRO 18 n 18 PRO 18 A LEU 19 n 19 LEU 19 A MET 20 n 20 MET 20 A ASP 21 n 21 ASP 21 A PHE 22 n 22 PHE 22 A ASN 23 n 23 ASN 23 A ASN 24 n 24 ASN 24 A TYR 25 n 25 TYR 25 A GLY 26 n 26 GLY 26 A CYS 27 n 27 CYS 27 A TYR 28 n 28 TYR 28 A CYS 29 n 29 CYS 29 A GLY 30 n 30 GLY 30 A LEU 31 n 31 LEU 31 A GLY 32 n 32 GLY 32 A GLY 33 n 33 GLY 33 A SER 34 n 34 SER 34 A GLY 35 n 35 GLY 35 A THR 36 n 36 THR 36 A PRO 37 n 37 PRO 37 A VAL 38 n 38 VAL 38 A ASP 39 n 39 ASP 39 A GLU 40 n 40 GLU 40 A LEU 41 n 41 LEU 41 A ASP 42 n 42 ASP 42 A ARG 43 n 43 ARG 43 A CYS 44 n 44 CYS 44 A CYS 45 n 45 CYS 45 A GLU 46 n 46 GLU 46 A THR 47 n 47 THR 47 A HIS 48 n 48 HIS 48 A ASP 49 n 49 ASP 49 A ASN 50 n 50 ASN 50 A CYS 51 n 51 CYS 51 A TYR 52 n 52 TYR 52 A ARG 53 n 53 ARG 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A LYS 56 n 56 LYS 56 A ASN 57 n 57 ASN 57 A LEU 58 n 58 LEU 58 A ASP 59 n 59 ASP 59 A SER 60 n 60 SER 60 A CYS 61 n 61 CYS 61 A LYS 62 n 62 LYS 62 A PHE 63 n 63 PHE 63 A LEU 64 n 64 LEU 64 A VAL 65 n 65 VAL 65 A ASP 66 n 66 ASP 66 A ASN 67 n 67 ASN 67 A PRO 68 n 68 PRO 68 A TYR 69 n 69 TYR 69 A THR 70 n 70 THR 70 A GLU 71 n 71 GLU 71 A SER 72 n 72 SER 72 A TYR 73 n 73 TYR 73 A SER 74 n 74 SER 74 A TYR 75 n 75 TYR 75 A SER 76 n 76 SER 76 A CYS 77 n 77 CYS 77 A SER 78 n 78 SER 78 A ASN 79 n 79 ASN 79 A THR 80 n 80 THR 80 A GLU 81 n 81 GLU 81 A ILE 82 n 82 ILE 82 A THR 83 n 83 THR 83 A CYS 84 n 84 CYS 84 A ASN 85 n 85 ASN 85 A SER 86 n 86 SER 86 A LYS 87 n 87 LYS 87 A ASN 88 n 88 ASN 88 A ASN 89 n 89 ASN 89 A ALA 90 n 90 ALA 90 A CYS 91 n 91 CYS 91 A GLU 92 n 92 GLU 92 A ALA 93 n 93 ALA 93 A PHE 94 n 94 PHE 94 A ILE 95 n 95 ILE 95 A CYS 96 n 96 CYS 96 A ASN 97 n 97 ASN 97 A CYS 98 n 98 CYS 98 A ASP 99 n 99 ASP 99 A ARG 100 n 100 ARG 100 A ASN 101 n 101 ASN 101 A ALA 102 n 102 ALA 102 A ALA 103 n 103 ALA 103 A ILE 104 n 104 ILE 104 A CYS 105 n 105 CYS 105 A PHE 106 n 106 PHE 106 A SER 107 n 107 SER 107 A LYS 108 n 108 LYS 108 A ALA 109 n 109 ALA 109 A PRO 110 n 110 PRO 110 A TYR 111 n 111 TYR 111 A ASN 112 n 112 ASN 112 A LYS 113 n 113 LYS 113 A GLU 114 n 114 GLU 114 A HIS 115 n 115 HIS 115 A LYS 116 n 116 LYS 116 A ASN 117 n 117 ASN 117 A LEU 118 n 118 LEU 118 A ASP 119 n 119 ASP 119 A THR 120 n 120 THR 120 A LYS 121 n 121 LYS 121 A LYS 122 n 122 LYS 122 A TYR 123 n 123 TYR 123 A CYS 124 n 124 CYS 124 A author_and_software_defined_assembly PISA,PQS 2 dimeric 1560 -49 12980 A TYR 28 A O TYR 28 1_555 A CA 125 B CA CA 1_555 A GLY 30 A O GLY 30 1_555 67.9 A TYR 28 A O TYR 28 1_555 A CA 125 B CA CA 1_555 A GLY 32 A O GLY 32 1_555 73.8 A GLY 30 A O GLY 30 1_555 A CA 125 B CA CA 1_555 A GLY 32 A O GLY 32 1_555 83.0 A TYR 28 A O TYR 28 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD1 ASP 49 1_555 104.6 A GLY 30 A O GLY 30 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD1 ASP 49 1_555 128.3 A GLY 32 A O GLY 32 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD1 ASP 49 1_555 146.5 A TYR 28 A O TYR 28 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD2 ASP 49 1_555 98.7 A GLY 30 A O GLY 30 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD2 ASP 49 1_555 166.6 A GLY 32 A O GLY 32 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD2 ASP 49 1_555 92.5 A ASP 49 A OD1 ASP 49 1_555 A CA 125 B CA CA 1_555 A ASP 49 A OD2 ASP 49 1_555 54.2 A GLU 92 A OE1 GLU 92 1_555 A CA 126 C CA CA 1_555 A SER 72 A O SER 72 1_555 66.5 A GLU 92 A OE1 GLU 92 1_555 A CA 126 C CA CA 1_555 A SER 72 A O SER 72 5_556 100.1 A SER 72 A O SER 72 1_555 A CA 126 C CA CA 1_555 A SER 72 A O SER 72 5_556 96.3 A GLU 92 A OE1 GLU 92 1_555 A CA 126 C CA CA 1_555 A GLU 92 A OE1 GLU 92 5_556 160.8 A SER 72 A O SER 72 1_555 A CA 126 C CA CA 1_555 A GLU 92 A OE1 GLU 92 5_556 100.1 A SER 72 A O SER 72 5_556 A CA 126 C CA CA 1_555 A GLU 92 A OE1 GLU 92 5_556 66.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_556 x-y,-y,-z+5/3 crystal symmetry operation 0.0000000000 0.0000000000 112.7666666667 1 A CA 126 C CA 1 A ARG 6 0.077 SIDE CHAIN 1 A ARG 43 0.077 SIDE CHAIN 1 14.14 2.10 128.40 142.54 A A A C N CD ILE PRO PRO 13 14 14 Y 1 16.48 2.10 120.10 136.58 A A A CA C O SER SER SER 16 16 16 N 1 18.03 2.50 121.70 139.73 A A A C N CA SER HIS HIS 16 17 17 Y 1 15.10 2.10 128.40 143.50 A A A C N CD HIS PRO PRO 17 18 18 Y 1 -8.86 1.40 111.70 102.84 A A A CA N CD PRO PRO PRO 18 18 18 N 1 6.83 0.90 118.30 125.13 A A A CB CG OD1 ASP ASP ASP 21 21 21 N 1 14.42 2.10 128.40 142.82 A A A C N CD THR PRO PRO 36 37 37 Y 1 -12.53 1.80 110.60 98.07 A A A N CA CB ASP ASP ASP 39 39 39 N 1 31.40 2.20 113.40 144.80 A A A CA CB CG ASP ASP ASP 39 39 39 N 1 14.68 0.90 118.30 132.98 A A A CB CG OD1 ASP ASP ASP 39 39 39 N 1 -7.98 0.90 118.30 110.32 A A A CB CG OD2 ASP ASP ASP 39 39 39 N 1 8.39 1.20 123.30 131.69 A A A OE1 CD OE2 GLU GLU GLU 40 40 40 N 1 -12.82 2.00 118.30 105.48 A A A CG CD OE1 GLU GLU GLU 40 40 40 N 1 5.96 0.90 118.30 124.26 A A A CB CG OD1 ASP ASP ASP 42 42 42 N 1 10.57 0.90 118.30 128.87 A A A CB CG OD1 ASP ASP ASP 49 49 49 N 1 -12.67 1.80 114.00 101.33 A A A CA CB SG CYS CYS CYS 51 51 51 N 1 5.59 0.90 118.30 123.89 A A A CB CG OD1 ASP ASP ASP 54 54 54 N 1 5.97 0.90 118.30 124.27 A A A CB CG OD1 ASP ASP ASP 59 59 59 N 1 15.41 2.10 128.40 143.81 A A A C N CD ASN PRO PRO 67 68 68 Y 1 16.13 2.10 120.10 136.23 A A A CA C O SER SER SER 74 74 74 N 1 -12.52 1.80 114.00 101.48 A A A CA CB SG CYS CYS CYS 77 77 77 N 1 7.58 1.20 123.30 130.88 A A A OE1 CD OE2 GLU GLU GLU 81 81 81 N 1 3.94 0.50 120.30 124.24 A A A NE CZ NH1 ARG ARG ARG 100 100 100 N 1 -9.24 1.40 111.70 102.46 A A A CA N CD PRO PRO PRO 110 110 110 N 1 9.13 1.20 123.30 132.43 A A A OE1 CD OE2 GLU GLU GLU 114 114 114 N 1 6.13 0.90 118.30 124.43 A A A CB CG OD1 ASP ASP ASP 119 119 119 N 1 A A NE1 CE2 TRP TRP 3 3 -0.092 0.013 1.371 1.279 N 1 A PRO 14 -63.42 10.22 1 A VAL 65 50.58 -3.20 1 A ASP 66 81.76 25.99 1 A PRO 68 -54.61 -2.75 1 A TYR 73 -143.04 15.71 1 A SER 74 35.76 115.82 1 A SER 78 -161.09 116.32 1 A ASN 79 71.01 40.18 1 A ASN 85 -47.80 152.28 1 A ILE 104 -57.66 -73.60 1 A ASN 117 63.02 81.91 1 A THR 120 -28.26 -91.17 1 A LYS 122 -160.64 -57.22 1 A TYR 123 -115.53 76.72 0.241 2.6 1 2.6 5 978 2 0 971 refinement PROLSQ PHOSPHOLIPASE A2 (E.C.3.1.1.4) (PHOSPHATIDE ACYL-HYDROLASE) STRUCTURE OF PORCINE PANCREATIC PHOSPHOLIPASE A2 AT 2.6 ANGSTROMS RESOLUTION AND COMPARISON WITH BOVINE PHOSPHOLIPASE A2 1 N N 2 N N 2 N N 3 N N A ALA 1 A ALA 1 HELX_P A ILE 13 A ILE 13 1 A 13 A HIS 17 A HIS 17 HELX_P HIS17 ALSO CLASS 5 WITH MET20 A PHE 22 A PHE 22 1 B 6 A ASP 39 A ASP 39 HELX_P ASP 54, ALA 55 CLASS 5 A LEU 58 A LEU 58 1 C 20 A ASN 67 A ASN 67 HELX_P A GLU 71 A GLU 71 5 D 5 A ASN 89 A ASN 89 HELX_P CYS 105 CLASS 5 A LYS 108 A LYS 108 1 E 20 disulf 2.076 A CYS 11 A SG CYS 11 1_555 A CYS 77 A SG CYS 77 1_555 disulf 2.072 A CYS 27 A SG CYS 27 1_555 A CYS 124 A SG CYS 124 1_555 disulf 2.087 A CYS 29 A SG CYS 29 1_555 A CYS 45 A SG CYS 45 1_555 disulf 2.073 A CYS 44 A SG CYS 44 1_555 A CYS 105 A SG CYS 105 1_555 disulf 2.086 A CYS 51 A SG CYS 51 1_555 A CYS 98 A SG CYS 98 1_555 disulf 2.083 A CYS 61 A SG CYS 61 1_555 A CYS 91 A SG CYS 91 1_555 disulf 2.080 A CYS 84 A SG CYS 84 1_555 A CYS 96 A SG CYS 96 1_555 metalc 2.558 A CA 125 B CA CA 1_555 A TYR 28 A O TYR 28 1_555 metalc 2.499 A CA 125 B CA CA 1_555 A GLY 30 A O GLY 30 1_555 metalc 2.676 A CA 125 B CA CA 1_555 A GLY 32 A O GLY 32 1_555 metalc 2.428 A CA 125 B CA CA 1_555 A ASP 49 A OD1 ASP 49 1_555 metalc 1.984 A CA 125 B CA CA 1_555 A ASP 49 A OD2 ASP 49 1_555 metalc 2.669 A CA 126 C CA CA 1_555 A GLU 92 A OE1 GLU 92 1_555 metalc 2.365 A CA 126 C CA CA 1_555 A SER 72 A O SER 72 1_555 metalc 2.364 A CA 126 C CA CA 1_555 A SER 72 A O SER 72 5_556 metalc 2.669 A CA 126 C CA CA 1_555 A GLU 92 A OE1 GLU 92 5_556 CARBOXYLIC ESTER HYDROLASE CARBOXYLIC ESTER HYDROLASE PA21B_PIG UNP 1 1 P00592 MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNL DSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC 23 146 1P2P 1 124 P00592 A 1 1 124 2 anti-parallel A SER 74 A SER 74 A SER 78 A SER 78 A GLU 81 A GLU 81 A ASN 85 A ASN 85 BINDING SITE FOR RESIDUE CA A 125 Software 4 BINDING SITE FOR RESIDUE CA A 126 Software 4 A TYR 28 A TYR 28 4 1_555 A GLY 30 A GLY 30 4 1_555 A GLY 32 A GLY 32 4 1_555 A ASP 49 A ASP 49 4 1_555 A SER 72 A SER 72 4 1_555 A SER 72 A SER 72 4 5_556 A GLU 92 A GLU 92 4 5_556 A GLU 92 A GLU 92 4 1_555 152 P 31 2 1