0.016146 0.000000 0.008646 0.000000 0.017935 0.000000 0.000000 0.000000 0.018845 0.00000 0.00000 0.00000 Meijers, R. Blagova, E.V. Levdikov, V.M. Rudenskaya, G.N. Chestukhina, G.G. Akimkina, T.V. Kostrov, S.V. Lamzin, V.S. Kuranova, I.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 118.17 90.00 61.936 55.757 60.195 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N O N 253 N C N 254 N C N 255 S C N 256 N O N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing US Biochemistry BICHAW 0033 0006-2960 43 2784 2791 10.1021/bi035354s 15005613 The crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation. 2004 10.2210/pdb1p3e/pdb pdb_00001p3e 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1999-03-01 MARRESEARCH SAGITALLY FOCUSED Si(111) SINGLE WAVELENGTH M x-ray 1 1.10 1.0 X11 EMBL/DESY, HAMBURG 1.10 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 22783.113 glutamyl-endopeptidase 1 nat polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 1 syn non-polymer 18.015 water 124 nat water no no VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus sample 1400 Bacillus intermedius 3-19 1 1.85 33.10 VAPOR DIFFUSION, HANGING DROP 7.0 0.01 M Tris-HCl buffer, pH 7.0, 2 mM CaCl2, 1.2 M potassium phosphate, 3% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 diffrn_source pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Advisory Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2004-04-27 1 1 2008-04-29 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2003-04-17 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 1P3C PDB ENTRY 1P3C PDB experimental model MPD 300 2 MPD MPD 300 A HOH 1 3 HOH HOH 301 A HOH 2 3 HOH HOH 302 A HOH 3 3 HOH HOH 303 A HOH 4 3 HOH HOH 304 A HOH 5 3 HOH HOH 305 A HOH 6 3 HOH HOH 306 A HOH 7 3 HOH HOH 307 A HOH 8 3 HOH HOH 308 A HOH 9 3 HOH HOH 309 A HOH 10 3 HOH HOH 310 A HOH 11 3 HOH HOH 311 A HOH 12 3 HOH HOH 312 A HOH 13 3 HOH HOH 313 A HOH 14 3 HOH HOH 314 A HOH 15 3 HOH HOH 315 A HOH 16 3 HOH HOH 316 A HOH 17 3 HOH HOH 317 A HOH 18 3 HOH HOH 318 A HOH 19 3 HOH HOH 319 A HOH 20 3 HOH HOH 320 A HOH 21 3 HOH HOH 321 A HOH 22 3 HOH HOH 322 A HOH 23 3 HOH HOH 323 A HOH 24 3 HOH HOH 324 A HOH 25 3 HOH HOH 325 A HOH 26 3 HOH HOH 326 A HOH 27 3 HOH HOH 327 A HOH 28 3 HOH HOH 328 A HOH 29 3 HOH HOH 329 A HOH 30 3 HOH HOH 330 A HOH 31 3 HOH HOH 331 A HOH 32 3 HOH HOH 332 A HOH 33 3 HOH HOH 333 A HOH 34 3 HOH HOH 334 A HOH 35 3 HOH HOH 335 A HOH 36 3 HOH HOH 336 A HOH 37 3 HOH HOH 337 A HOH 38 3 HOH HOH 338 A HOH 39 3 HOH HOH 339 A HOH 40 3 HOH HOH 340 A HOH 41 3 HOH HOH 341 A HOH 42 3 HOH HOH 342 A HOH 43 3 HOH HOH 343 A HOH 44 3 HOH HOH 344 A HOH 45 3 HOH HOH 345 A HOH 46 3 HOH HOH 346 A HOH 47 3 HOH HOH 347 A HOH 48 3 HOH HOH 348 A HOH 49 3 HOH HOH 349 A HOH 50 3 HOH HOH 350 A HOH 51 3 HOH HOH 351 A HOH 52 3 HOH HOH 352 A HOH 53 3 HOH HOH 353 A HOH 54 3 HOH HOH 354 A HOH 55 3 HOH HOH 355 A HOH 56 3 HOH HOH 356 A HOH 57 3 HOH HOH 357 A HOH 58 3 HOH HOH 358 A HOH 59 3 HOH HOH 359 A HOH 60 3 HOH HOH 360 A HOH 61 3 HOH HOH 361 A HOH 62 3 HOH HOH 362 A HOH 63 3 HOH HOH 363 A HOH 64 3 HOH HOH 364 A HOH 65 3 HOH HOH 365 A HOH 66 3 HOH HOH 366 A HOH 67 3 HOH HOH 367 A HOH 68 3 HOH HOH 368 A HOH 69 3 HOH HOH 369 A HOH 70 3 HOH HOH 370 A HOH 71 3 HOH HOH 371 A HOH 72 3 HOH HOH 372 A HOH 73 3 HOH HOH 373 A HOH 74 3 HOH HOH 374 A HOH 75 3 HOH HOH 375 A HOH 76 3 HOH HOH 376 A HOH 77 3 HOH HOH 377 A HOH 78 3 HOH HOH 378 A HOH 79 3 HOH HOH 379 A HOH 80 3 HOH HOH 380 A HOH 81 3 HOH HOH 381 A HOH 82 3 HOH HOH 382 A HOH 83 3 HOH HOH 383 A HOH 84 3 HOH HOH 384 A HOH 85 3 HOH HOH 385 A HOH 86 3 HOH HOH 386 A HOH 87 3 HOH HOH 387 A HOH 88 3 HOH HOH 388 A HOH 89 3 HOH HOH 389 A HOH 90 3 HOH HOH 390 A HOH 91 3 HOH HOH 391 A HOH 92 3 HOH HOH 392 A HOH 93 3 HOH HOH 393 A HOH 94 3 HOH HOH 394 A HOH 95 3 HOH HOH 395 A HOH 96 3 HOH HOH 396 A HOH 97 3 HOH HOH 397 A HOH 98 3 HOH HOH 398 A HOH 99 3 HOH HOH 399 A HOH 100 3 HOH HOH 400 A HOH 101 3 HOH HOH 401 A HOH 102 3 HOH HOH 402 A HOH 103 3 HOH HOH 403 A HOH 104 3 HOH HOH 404 A HOH 105 3 HOH HOH 405 A HOH 106 3 HOH HOH 406 A HOH 107 3 HOH HOH 407 A HOH 108 3 HOH HOH 408 A HOH 109 3 HOH HOH 409 A HOH 110 3 HOH HOH 410 A HOH 111 3 HOH HOH 411 A HOH 112 3 HOH HOH 412 A HOH 113 3 HOH HOH 413 A HOH 114 3 HOH HOH 414 A HOH 115 3 HOH HOH 415 A HOH 116 3 HOH HOH 416 A HOH 117 3 HOH HOH 417 A HOH 118 3 HOH HOH 418 A HOH 119 3 HOH HOH 419 A HOH 120 3 HOH HOH 420 A HOH 121 3 HOH HOH 421 A HOH 122 3 HOH HOH 422 A HOH 123 3 HOH HOH 423 A HOH 124 3 HOH HOH 424 A VAL 1 n 1 VAL 1 A VAL 2 n 2 VAL 2 A ILE 3 n 3 ILE 3 A GLY 4 n 4 GLY 4 A ASP 5 n 5 ASP 5 A ASP 6 n 6 ASP 6 A GLY 7 n 7 GLY 7 A ARG 8 n 8 ARG 8 A THR 9 n 9 THR 9 A LYS 10 n 10 LYS 10 A VAL 11 n 11 VAL 11 A ALA 12 n 12 ALA 12 A ASN 13 n 13 ASN 13 A THR 14 n 14 THR 14 A ARG 15 n 15 ARG 15 A VAL 16 n 16 VAL 16 A ALA 17 n 17 ALA 17 A PRO 18 n 18 PRO 18 A TYR 19 n 19 TYR 19 A ASN 20 n 20 ASN 20 A SER 21 n 21 SER 21 A ILE 22 n 22 ILE 22 A ALA 23 n 23 ALA 23 A TYR 24 n 24 TYR 24 A ILE 25 n 25 ILE 25 A THR 26 n 26 THR 26 A PHE 27 n 27 PHE 27 A GLY 28 n 28 GLY 28 A GLY 29 n 29 GLY 29 A SER 30 n 30 SER 30 A SER 31 n 31 SER 31 A CYS 32 n 32 CYS 32 A THR 33 n 33 THR 33 A GLY 34 n 34 GLY 34 A THR 35 n 35 THR 35 A LEU 36 n 36 LEU 36 A ILE 37 n 37 ILE 37 A ALA 38 n 38 ALA 38 A PRO 39 n 39 PRO 39 A ASN 40 n 40 ASN 40 A LYS 41 n 41 LYS 41 A ILE 42 n 42 ILE 42 A LEU 43 n 43 LEU 43 A THR 44 n 44 THR 44 A ASN 45 n 45 ASN 45 A GLY 46 n 46 GLY 46 A HIS 47 n 47 HIS 47 A CYS 48 n 48 CYS 48 A VAL 49 n 49 VAL 49 A TYR 50 n 50 TYR 50 A ASN 51 n 51 ASN 51 A THR 52 n 52 THR 52 A ALA 53 n 53 ALA 53 A SER 54 n 54 SER 54 A ARG 55 n 55 ARG 55 A SER 56 n 56 SER 56 A TYR 57 n 57 TYR 57 A SER 58 n 58 SER 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A GLY 61 n 61 GLY 61 A SER 62 n 62 SER 62 A VAL 63 n 63 VAL 63 A TYR 64 n 64 TYR 64 A PRO 65 n 65 PRO 65 A GLY 66 n 66 GLY 66 A MET 67 n 67 MET 67 A ASN 68 n 68 ASN 68 A ASP 69 n 69 ASP 69 A SER 70 n 70 SER 70 A THR 71 n 71 THR 71 A ALA 72 n 72 ALA 72 A VAL 73 n 73 VAL 73 A ASN 74 n 74 ASN 74 A GLY 75 n 75 GLY 75 A SER 76 n 76 SER 76 A ALA 77 n 77 ALA 77 A ASN 78 n 78 ASN 78 A MET 79 n 79 MET 79 A THR 80 n 80 THR 80 A GLU 81 n 81 GLU 81 A PHE 82 n 82 PHE 82 A TYR 83 n 83 TYR 83 A VAL 84 n 84 VAL 84 A PRO 85 n 85 PRO 85 A SER 86 n 86 SER 86 A GLY 87 n 87 GLY 87 A TYR 88 n 88 TYR 88 A ILE 89 n 89 ILE 89 A ASN 90 n 90 ASN 90 A THR 91 n 91 THR 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A SER 94 n 94 SER 94 A GLN 95 n 95 GLN 95 A TYR 96 n 96 TYR 96 A ASP 97 n 97 ASP 97 A PHE 98 n 98 PHE 98 A ALA 99 n 99 ALA 99 A VAL 100 n 100 VAL 100 A ILE 101 n 101 ILE 101 A LYS 102 n 102 LYS 102 A THR 103 n 103 THR 103 A ASP 104 n 104 ASP 104 A THR 105 n 105 THR 105 A ASN 106 n 106 ASN 106 A ILE 107 n 107 ILE 107 A GLY 108 n 108 GLY 108 A ASN 109 n 109 ASN 109 A THR 110 n 110 THR 110 A VAL 111 n 111 VAL 111 A GLY 112 n 112 GLY 112 A TYR 113 n 113 TYR 113 A ARG 114 n 114 ARG 114 A SER 115 n 115 SER 115 A ILE 116 n 116 ILE 116 A ARG 117 n 117 ARG 117 A GLN 118 n 118 GLN 118 A VAL 119 n 119 VAL 119 A THR 120 n 120 THR 120 A ASN 121 n 121 ASN 121 A LEU 122 n 122 LEU 122 A THR 123 n 123 THR 123 A GLY 124 n 124 GLY 124 A THR 125 n 125 THR 125 A THR 126 n 126 THR 126 A ILE 127 n 127 ILE 127 A LYS 128 n 128 LYS 128 A ILE 129 n 129 ILE 129 A SER 130 n 130 SER 130 A GLY 131 n 131 GLY 131 A TYR 132 n 132 TYR 132 A PRO 133 n 133 PRO 133 A GLY 134 n 134 GLY 134 A ASP 135 n 135 ASP 135 A LYS 136 n 136 LYS 136 A MET 137 n 137 MET 137 A ARG 138 n 138 ARG 138 A SER 139 n 139 SER 139 A THR 140 n 140 THR 140 A GLY 141 n 141 GLY 141 A LYS 142 n 142 LYS 142 A VAL 143 n 143 VAL 143 A SER 144 n 144 SER 144 A GLN 145 n 145 GLN 145 A TRP 146 n 146 TRP 146 A GLU 147 n 147 GLU 147 A MET 148 n 148 MET 148 A SER 149 n 149 SER 149 A GLY 150 n 150 GLY 150 A SER 151 n 151 SER 151 A VAL 152 n 152 VAL 152 A THR 153 n 153 THR 153 A ARG 154 n 154 ARG 154 A GLU 155 n 155 GLU 155 A ASP 156 n 156 ASP 156 A THR 157 n 157 THR 157 A ASN 158 n 158 ASN 158 A LEU 159 n 159 LEU 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A TYR 162 n 162 TYR 162 A THR 163 n 163 THR 163 A ILE 164 n 164 ILE 164 A ASP 165 n 165 ASP 165 A THR 166 n 166 THR 166 A PHE 167 n 167 PHE 167 A SER 168 n 168 SER 168 A GLY 169 n 169 GLY 169 A ASN 170 n 170 ASN 170 A SER 171 n 171 SER 171 A GLY 172 n 172 GLY 172 A SER 173 n 173 SER 173 A ALA 174 n 174 ALA 174 A MET 175 n 175 MET 175 A LEU 176 n 176 LEU 176 A ASP 177 n 177 ASP 177 A GLN 178 n 178 GLN 178 A ASN 179 n 179 ASN 179 A GLN 180 n 180 GLN 180 A GLN 181 n 181 GLN 181 A ILE 182 n 182 ILE 182 A VAL 183 n 183 VAL 183 A GLY 184 n 184 GLY 184 A VAL 185 n 185 VAL 185 A HIS 186 n 186 HIS 186 A ASN 187 n 187 ASN 187 A ALA 188 n 188 ALA 188 A GLY 189 n 189 GLY 189 A TYR 190 n 190 TYR 190 A SER 191 n 191 SER 191 A ASN 192 n 192 ASN 192 A GLY 193 n 193 GLY 193 A THR 194 n 194 THR 194 A ILE 195 n 195 ILE 195 A ASN 196 n 196 ASN 196 A GLY 197 n 197 GLY 197 A GLY 198 n 198 GLY 198 A PRO 199 n 199 PRO 199 A LYS 200 n 200 LYS 200 A ALA 201 n 201 ALA 201 A THR 202 n 202 THR 202 A ALA 203 n 203 ALA 203 A ALA 204 n 204 ALA 204 A PHE 205 n 205 PHE 205 A VAL 206 n 206 VAL 206 A GLU 207 n 207 GLU 207 A PHE 208 n 208 PHE 208 A ILE 209 n 209 ILE 209 A ASN 210 n 210 ASN 210 A TYR 211 n 211 TYR 211 A ALA 212 n 212 ALA 212 A LYS 213 n 213 LYS 213 A ALA 214 n 214 ALA 214 A GLN 215 n 215 GLN 215 A -0.1060 -0.0839 -0.2426 1.1244 0.1192 -0.0800 0.1260 0.0596 -0.1331 -0.1290 0.0084 0.0608 0.1016 -0.0792 -0.1344 0.1286 0.0433 0.0407 0.2504 0.0412 0.0887 refined 11.4800 27.4190 9.9510 X-RAY DIFFRACTION -0.2499 -0.5289 -0.1555 0.9034 0.2604 -0.4126 0.0306 0.0656 -0.2270 -0.0157 0.0090 -0.1946 0.2854 0.1667 -0.0395 0.0576 -0.1034 -0.0142 0.1915 0.0428 0.0541 refined 15.7410 33.2930 23.9140 X-RAY DIFFRACTION A 1 A 1 A 21 A 21 X-RAY DIFFRACTION 1 A 122 A 122 A 200 A 200 X-RAY DIFFRACTION 1 A 22 A 22 A 121 A 121 X-RAY DIFFRACTION 2 A 201 A 201 A 215 A 215 X-RAY DIFFRACTION 2 author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 2980 -36 15150 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 33.5185875538 0.0000000000 53.0649478928 A N THR 9 A N THR 9 A O GLU 147 A O GLU 147 A O GLY 150 A O GLY 150 A N ILE 127 A N ILE 127 A N ALA 23 A N ALA 23 A O GLY 34 A O GLY 34 A N THR 35 A N THR 35 A O LEU 43 A O LEU 43 A N ILE 42 A N ILE 42 A O ILE 101 A O ILE 101 A O VAL 100 A O VAL 100 A N TYR 83 A N TYR 83 A O ALA 77 A O ALA 77 A N VAL 63 A N VAL 63 A O TYR 64 A O TYR 64 A N TYR 24 A N TYR 24 A N ASN 51 A N ASN 51 A O SER 56 A O SER 56 A N ARG 154 A N ARG 154 A O TYR 161 A O TYR 161 A N TYR 162 A N TYR 162 A O ASN 196 A O ASN 196 A O ILE 195 A O ILE 195 A N TYR 190 A N TYR 190 A N MET 175 A N MET 175 A O VAL 183 A O VAL 183 1 A HOH 340 C HOH 1 A A O O HOH HOH 424 424 2.09 1_555 2_655 1 A ASP 156 -125.25 -159.79 13.378 0.84 0.00 1.84 -0.23 0.00 1.13 0.969 0.955 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. NO REFLECTIONS WERE EXCLUDED ON THE BASIS OF A SIGMA CUTOFF 0.20809 0.16579 0.16791 0.16791 1.72 19.69 965 17769 17769 5.2 97.34 2.465 0.080 RANDOM LIKELY RESIDUAL 1 THROUGHOUT -3 MOLECULAR REPLACEMENT 0.119 0.116 0.80 0.80 1.40 PDB ENTRY 1P3C MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.72 19.69 124 1732 8 0 1600 0.013 0.021 1674 0.002 0.020 1452 1.420 1.929 2283 1.191 3.000 3382 5.782 5.000 222 0.121 0.200 259 0.006 0.020 1933 0.002 0.020 341 0.183 0.200 298 0.245 0.200 1683 0.085 0.200 1013 0.156 0.200 77 0.226 0.200 12 0.361 0.200 31 0.275 0.200 8 0.877 1.500 1080 1.557 2.000 1745 2.301 3.000 594 3.734 4.500 538 0.302 0.223 1.764 51 1255 20 1.72 20 1P3E 18778 18778 -2 -3 1 93.0 1.72 1.76 1 95.4 refinement REFMAC 5.1.19 data reduction DENZO data scaling SCALEPACK phasing AMoRE Structure of Glu endopeptidase in complex with MPD 1 N N 2 N N 3 N N A PRO 18 A PRO 18 HELX_P A ASN 20 A ASN 20 5 1 3 A ASN 45 A ASN 45 HELX_P A VAL 49 A VAL 49 1 2 5 A PRO 85 A PRO 85 HELX_P A GLY 92 A GLY 92 1 3 8 A ALA 93 A ALA 93 HELX_P A ASP 97 A ASP 97 5 4 5 A ILE 107 A ILE 107 HELX_P A GLY 112 A GLY 112 1 5 6 A PRO 133 A PRO 133 HELX_P A GLY 141 A GLY 141 1 6 9 A THR 202 A THR 202 HELX_P A ALA 214 A ALA 214 1 7 13 disulf 2.014 A CYS 32 A SG CYS 32 1_555 A CYS 48 A SG CYS 48 1_555 HYDROLASE serine protease, Glu specific, HYDROLASE A ALA 17 A ALA 17 1 A PRO 18 A PRO 18 -2.61 Q9EXR9_BACIN UNP 1 89 Q9EXR9 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 89 303 1P3E 1 215 Q9EXR9 A 1 1 215 3 7 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 9 A THR 9 A LYS 10 A LYS 10 A TRP 146 A TRP 146 A SER 151 A SER 151 A THR 126 A THR 126 A GLY 131 A GLY 131 A ILE 22 A ILE 22 A THR 26 A THR 26 A SER 31 A SER 31 A ALA 38 A ALA 38 A LYS 41 A LYS 41 A THR 44 A THR 44 A ALA 99 A ALA 99 A THR 103 A THR 103 A ALA 77 A ALA 77 A TYR 83 A TYR 83 A SER 62 A SER 62 A PRO 65 A PRO 65 A ILE 22 A ILE 22 A THR 26 A THR 26 A TYR 50 A TYR 50 A ASN 51 A ASN 51 A SER 56 A SER 56 A TYR 57 A TYR 57 A ARG 154 A ARG 154 A GLU 155 A GLU 155 A LEU 159 A LEU 159 A TYR 162 A TYR 162 A ILE 195 A ILE 195 A PRO 199 A PRO 199 A ALA 188 A ALA 188 A TYR 190 A TYR 190 A ALA 174 A ALA 174 A LEU 176 A LEU 176 A ILE 182 A ILE 182 A VAL 185 A VAL 185 BINDING SITE FOR RESIDUE MPD A 300 A MPD 300 Software 6 A VAL 1 A VAL 1 6 1_555 A GLY 29 A GLY 29 6 2_656 A THR 166 A THR 166 6 1_555 A PHE 167 A PHE 167 6 1_555 A SER 168 A SER 168 6 1_555 A HIS 186 A HIS 186 6 1_555 5 C 1 2 1