0.016146
0.000000
0.008646
0.000000
0.017935
0.000000
0.000000
0.000000
0.018845
0.00000
0.00000
0.00000
Meijers, R.
Blagova, E.V.
Levdikov, V.M.
Rudenskaya, G.N.
Chestukhina, G.G.
Akimkina, T.V.
Kostrov, S.V.
Lamzin, V.S.
Kuranova, I.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
118.17
90.00
61.936
55.757
60.195
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
43
2784
2791
10.1021/bi035354s
15005613
The crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation.
2004
10.2210/pdb1p3e/pdb
pdb_00001p3e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1999-03-01
MARRESEARCH
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.10
1.0
X11
EMBL/DESY, HAMBURG
1.10
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
22783.113
glutamyl-endopeptidase
1
nat
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
18.015
water
124
nat
water
no
no
VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT
EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA
YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ
VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT
EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA
YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
sample
1400
Bacillus intermedius
3-19
1
1.85
33.10
VAPOR DIFFUSION, HANGING DROP
7.0
0.01 M Tris-HCl buffer, pH 7.0, 2 mM CaCl2, 1.2 M potassium phosphate, 3% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Advisory
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2004-04-27
1
1
2008-04-29
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2003-04-17
REL
REL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
1P3C
PDB ENTRY 1P3C
PDB
experimental model
MPD
300
2
MPD
MPD
300
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
HOH
70
3
HOH
HOH
370
A
HOH
71
3
HOH
HOH
371
A
HOH
72
3
HOH
HOH
372
A
HOH
73
3
HOH
HOH
373
A
HOH
74
3
HOH
HOH
374
A
HOH
75
3
HOH
HOH
375
A
HOH
76
3
HOH
HOH
376
A
HOH
77
3
HOH
HOH
377
A
HOH
78
3
HOH
HOH
378
A
HOH
79
3
HOH
HOH
379
A
HOH
80
3
HOH
HOH
380
A
HOH
81
3
HOH
HOH
381
A
HOH
82
3
HOH
HOH
382
A
HOH
83
3
HOH
HOH
383
A
HOH
84
3
HOH
HOH
384
A
HOH
85
3
HOH
HOH
385
A
HOH
86
3
HOH
HOH
386
A
HOH
87
3
HOH
HOH
387
A
HOH
88
3
HOH
HOH
388
A
HOH
89
3
HOH
HOH
389
A
HOH
90
3
HOH
HOH
390
A
HOH
91
3
HOH
HOH
391
A
HOH
92
3
HOH
HOH
392
A
HOH
93
3
HOH
HOH
393
A
HOH
94
3
HOH
HOH
394
A
HOH
95
3
HOH
HOH
395
A
HOH
96
3
HOH
HOH
396
A
HOH
97
3
HOH
HOH
397
A
HOH
98
3
HOH
HOH
398
A
HOH
99
3
HOH
HOH
399
A
HOH
100
3
HOH
HOH
400
A
HOH
101
3
HOH
HOH
401
A
HOH
102
3
HOH
HOH
402
A
HOH
103
3
HOH
HOH
403
A
HOH
104
3
HOH
HOH
404
A
HOH
105
3
HOH
HOH
405
A
HOH
106
3
HOH
HOH
406
A
HOH
107
3
HOH
HOH
407
A
HOH
108
3
HOH
HOH
408
A
HOH
109
3
HOH
HOH
409
A
HOH
110
3
HOH
HOH
410
A
HOH
111
3
HOH
HOH
411
A
HOH
112
3
HOH
HOH
412
A
HOH
113
3
HOH
HOH
413
A
HOH
114
3
HOH
HOH
414
A
HOH
115
3
HOH
HOH
415
A
HOH
116
3
HOH
HOH
416
A
HOH
117
3
HOH
HOH
417
A
HOH
118
3
HOH
HOH
418
A
HOH
119
3
HOH
HOH
419
A
HOH
120
3
HOH
HOH
420
A
HOH
121
3
HOH
HOH
421
A
HOH
122
3
HOH
HOH
422
A
HOH
123
3
HOH
HOH
423
A
HOH
124
3
HOH
HOH
424
A
VAL
1
n
1
VAL
1
A
VAL
2
n
2
VAL
2
A
ILE
3
n
3
ILE
3
A
GLY
4
n
4
GLY
4
A
ASP
5
n
5
ASP
5
A
ASP
6
n
6
ASP
6
A
GLY
7
n
7
GLY
7
A
ARG
8
n
8
ARG
8
A
THR
9
n
9
THR
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
THR
14
n
14
THR
14
A
ARG
15
n
15
ARG
15
A
VAL
16
n
16
VAL
16
A
ALA
17
n
17
ALA
17
A
PRO
18
n
18
PRO
18
A
TYR
19
n
19
TYR
19
A
ASN
20
n
20
ASN
20
A
SER
21
n
21
SER
21
A
ILE
22
n
22
ILE
22
A
ALA
23
n
23
ALA
23
A
TYR
24
n
24
TYR
24
A
ILE
25
n
25
ILE
25
A
THR
26
n
26
THR
26
A
PHE
27
n
27
PHE
27
A
GLY
28
n
28
GLY
28
A
GLY
29
n
29
GLY
29
A
SER
30
n
30
SER
30
A
SER
31
n
31
SER
31
A
CYS
32
n
32
CYS
32
A
THR
33
n
33
THR
33
A
GLY
34
n
34
GLY
34
A
THR
35
n
35
THR
35
A
LEU
36
n
36
LEU
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
PRO
39
n
39
PRO
39
A
ASN
40
n
40
ASN
40
A
LYS
41
n
41
LYS
41
A
ILE
42
n
42
ILE
42
A
LEU
43
n
43
LEU
43
A
THR
44
n
44
THR
44
A
ASN
45
n
45
ASN
45
A
GLY
46
n
46
GLY
46
A
HIS
47
n
47
HIS
47
A
CYS
48
n
48
CYS
48
A
VAL
49
n
49
VAL
49
A
TYR
50
n
50
TYR
50
A
ASN
51
n
51
ASN
51
A
THR
52
n
52
THR
52
A
ALA
53
n
53
ALA
53
A
SER
54
n
54
SER
54
A
ARG
55
n
55
ARG
55
A
SER
56
n
56
SER
56
A
TYR
57
n
57
TYR
57
A
SER
58
n
58
SER
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
VAL
63
n
63
VAL
63
A
TYR
64
n
64
TYR
64
A
PRO
65
n
65
PRO
65
A
GLY
66
n
66
GLY
66
A
MET
67
n
67
MET
67
A
ASN
68
n
68
ASN
68
A
ASP
69
n
69
ASP
69
A
SER
70
n
70
SER
70
A
THR
71
n
71
THR
71
A
ALA
72
n
72
ALA
72
A
VAL
73
n
73
VAL
73
A
ASN
74
n
74
ASN
74
A
GLY
75
n
75
GLY
75
A
SER
76
n
76
SER
76
A
ALA
77
n
77
ALA
77
A
ASN
78
n
78
ASN
78
A
MET
79
n
79
MET
79
A
THR
80
n
80
THR
80
A
GLU
81
n
81
GLU
81
A
PHE
82
n
82
PHE
82
A
TYR
83
n
83
TYR
83
A
VAL
84
n
84
VAL
84
A
PRO
85
n
85
PRO
85
A
SER
86
n
86
SER
86
A
GLY
87
n
87
GLY
87
A
TYR
88
n
88
TYR
88
A
ILE
89
n
89
ILE
89
A
ASN
90
n
90
ASN
90
A
THR
91
n
91
THR
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
SER
94
n
94
SER
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ASP
97
n
97
ASP
97
A
PHE
98
n
98
PHE
98
A
ALA
99
n
99
ALA
99
A
VAL
100
n
100
VAL
100
A
ILE
101
n
101
ILE
101
A
LYS
102
n
102
LYS
102
A
THR
103
n
103
THR
103
A
ASP
104
n
104
ASP
104
A
THR
105
n
105
THR
105
A
ASN
106
n
106
ASN
106
A
ILE
107
n
107
ILE
107
A
GLY
108
n
108
GLY
108
A
ASN
109
n
109
ASN
109
A
THR
110
n
110
THR
110
A
VAL
111
n
111
VAL
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
ARG
114
n
114
ARG
114
A
SER
115
n
115
SER
115
A
ILE
116
n
116
ILE
116
A
ARG
117
n
117
ARG
117
A
GLN
118
n
118
GLN
118
A
VAL
119
n
119
VAL
119
A
THR
120
n
120
THR
120
A
ASN
121
n
121
ASN
121
A
LEU
122
n
122
LEU
122
A
THR
123
n
123
THR
123
A
GLY
124
n
124
GLY
124
A
THR
125
n
125
THR
125
A
THR
126
n
126
THR
126
A
ILE
127
n
127
ILE
127
A
LYS
128
n
128
LYS
128
A
ILE
129
n
129
ILE
129
A
SER
130
n
130
SER
130
A
GLY
131
n
131
GLY
131
A
TYR
132
n
132
TYR
132
A
PRO
133
n
133
PRO
133
A
GLY
134
n
134
GLY
134
A
ASP
135
n
135
ASP
135
A
LYS
136
n
136
LYS
136
A
MET
137
n
137
MET
137
A
ARG
138
n
138
ARG
138
A
SER
139
n
139
SER
139
A
THR
140
n
140
THR
140
A
GLY
141
n
141
GLY
141
A
LYS
142
n
142
LYS
142
A
VAL
143
n
143
VAL
143
A
SER
144
n
144
SER
144
A
GLN
145
n
145
GLN
145
A
TRP
146
n
146
TRP
146
A
GLU
147
n
147
GLU
147
A
MET
148
n
148
MET
148
A
SER
149
n
149
SER
149
A
GLY
150
n
150
GLY
150
A
SER
151
n
151
SER
151
A
VAL
152
n
152
VAL
152
A
THR
153
n
153
THR
153
A
ARG
154
n
154
ARG
154
A
GLU
155
n
155
GLU
155
A
ASP
156
n
156
ASP
156
A
THR
157
n
157
THR
157
A
ASN
158
n
158
ASN
158
A
LEU
159
n
159
LEU
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
TYR
162
n
162
TYR
162
A
THR
163
n
163
THR
163
A
ILE
164
n
164
ILE
164
A
ASP
165
n
165
ASP
165
A
THR
166
n
166
THR
166
A
PHE
167
n
167
PHE
167
A
SER
168
n
168
SER
168
A
GLY
169
n
169
GLY
169
A
ASN
170
n
170
ASN
170
A
SER
171
n
171
SER
171
A
GLY
172
n
172
GLY
172
A
SER
173
n
173
SER
173
A
ALA
174
n
174
ALA
174
A
MET
175
n
175
MET
175
A
LEU
176
n
176
LEU
176
A
ASP
177
n
177
ASP
177
A
GLN
178
n
178
GLN
178
A
ASN
179
n
179
ASN
179
A
GLN
180
n
180
GLN
180
A
GLN
181
n
181
GLN
181
A
ILE
182
n
182
ILE
182
A
VAL
183
n
183
VAL
183
A
GLY
184
n
184
GLY
184
A
VAL
185
n
185
VAL
185
A
HIS
186
n
186
HIS
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
GLY
189
n
189
GLY
189
A
TYR
190
n
190
TYR
190
A
SER
191
n
191
SER
191
A
ASN
192
n
192
ASN
192
A
GLY
193
n
193
GLY
193
A
THR
194
n
194
THR
194
A
ILE
195
n
195
ILE
195
A
ASN
196
n
196
ASN
196
A
GLY
197
n
197
GLY
197
A
GLY
198
n
198
GLY
198
A
PRO
199
n
199
PRO
199
A
LYS
200
n
200
LYS
200
A
ALA
201
n
201
ALA
201
A
THR
202
n
202
THR
202
A
ALA
203
n
203
ALA
203
A
ALA
204
n
204
ALA
204
A
PHE
205
n
205
PHE
205
A
VAL
206
n
206
VAL
206
A
GLU
207
n
207
GLU
207
A
PHE
208
n
208
PHE
208
A
ILE
209
n
209
ILE
209
A
ASN
210
n
210
ASN
210
A
TYR
211
n
211
TYR
211
A
ALA
212
n
212
ALA
212
A
LYS
213
n
213
LYS
213
A
ALA
214
n
214
ALA
214
A
GLN
215
n
215
GLN
215
A
-0.1060
-0.0839
-0.2426
1.1244
0.1192
-0.0800
0.1260
0.0596
-0.1331
-0.1290
0.0084
0.0608
0.1016
-0.0792
-0.1344
0.1286
0.0433
0.0407
0.2504
0.0412
0.0887
refined
11.4800
27.4190
9.9510
X-RAY DIFFRACTION
-0.2499
-0.5289
-0.1555
0.9034
0.2604
-0.4126
0.0306
0.0656
-0.2270
-0.0157
0.0090
-0.1946
0.2854
0.1667
-0.0395
0.0576
-0.1034
-0.0142
0.1915
0.0428
0.0541
refined
15.7410
33.2930
23.9140
X-RAY DIFFRACTION
A
1
A
1
A
21
A
21
X-RAY DIFFRACTION
1
A
122
A
122
A
200
A
200
X-RAY DIFFRACTION
1
A
22
A
22
A
121
A
121
X-RAY DIFFRACTION
2
A
201
A
201
A
215
A
215
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
2980
-36
15150
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
33.5185875538
0.0000000000
53.0649478928
A
N
THR
9
A
N
THR
9
A
O
GLU
147
A
O
GLU
147
A
O
GLY
150
A
O
GLY
150
A
N
ILE
127
A
N
ILE
127
A
N
ALA
23
A
N
ALA
23
A
O
GLY
34
A
O
GLY
34
A
N
THR
35
A
N
THR
35
A
O
LEU
43
A
O
LEU
43
A
N
ILE
42
A
N
ILE
42
A
O
ILE
101
A
O
ILE
101
A
O
VAL
100
A
O
VAL
100
A
N
TYR
83
A
N
TYR
83
A
O
ALA
77
A
O
ALA
77
A
N
VAL
63
A
N
VAL
63
A
O
TYR
64
A
O
TYR
64
A
N
TYR
24
A
N
TYR
24
A
N
ASN
51
A
N
ASN
51
A
O
SER
56
A
O
SER
56
A
N
ARG
154
A
N
ARG
154
A
O
TYR
161
A
O
TYR
161
A
N
TYR
162
A
N
TYR
162
A
O
ASN
196
A
O
ASN
196
A
O
ILE
195
A
O
ILE
195
A
N
TYR
190
A
N
TYR
190
A
N
MET
175
A
N
MET
175
A
O
VAL
183
A
O
VAL
183
1
A
HOH
340
C
HOH
1
A
A
O
O
HOH
HOH
424
424
2.09
1_555
2_655
1
A
ASP
156
-125.25
-159.79
13.378
0.84
0.00
1.84
-0.23
0.00
1.13
0.969
0.955
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
NO REFLECTIONS WERE EXCLUDED ON THE BASIS OF A SIGMA CUTOFF
0.20809
0.16579
0.16791
0.16791
1.72
19.69
965
17769
17769
5.2
97.34
2.465
0.080
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
-3
MOLECULAR REPLACEMENT
0.119
0.116
0.80
0.80
1.40
PDB ENTRY 1P3C
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.72
19.69
124
1732
8
0
1600
0.013
0.021
1674
0.002
0.020
1452
1.420
1.929
2283
1.191
3.000
3382
5.782
5.000
222
0.121
0.200
259
0.006
0.020
1933
0.002
0.020
341
0.183
0.200
298
0.245
0.200
1683
0.085
0.200
1013
0.156
0.200
77
0.226
0.200
12
0.361
0.200
31
0.275
0.200
8
0.877
1.500
1080
1.557
2.000
1745
2.301
3.000
594
3.734
4.500
538
0.302
0.223
1.764
51
1255
20
1.72
20
1P3E
18778
18778
-2
-3
1
93.0
1.72
1.76
1
95.4
refinement
REFMAC
5.1.19
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Structure of Glu endopeptidase in complex with MPD
1
N
N
2
N
N
3
N
N
A
PRO
18
A
PRO
18
HELX_P
A
ASN
20
A
ASN
20
5
1
3
A
ASN
45
A
ASN
45
HELX_P
A
VAL
49
A
VAL
49
1
2
5
A
PRO
85
A
PRO
85
HELX_P
A
GLY
92
A
GLY
92
1
3
8
A
ALA
93
A
ALA
93
HELX_P
A
ASP
97
A
ASP
97
5
4
5
A
ILE
107
A
ILE
107
HELX_P
A
GLY
112
A
GLY
112
1
5
6
A
PRO
133
A
PRO
133
HELX_P
A
GLY
141
A
GLY
141
1
6
9
A
THR
202
A
THR
202
HELX_P
A
ALA
214
A
ALA
214
1
7
13
disulf
2.014
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
48
A
SG
CYS
48
1_555
HYDROLASE
serine protease, Glu specific, HYDROLASE
A
ALA
17
A
ALA
17
1
A
PRO
18
A
PRO
18
-2.61
Q9EXR9_BACIN
UNP
1
89
Q9EXR9
VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT
EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLA
YYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ
89
303
1P3E
1
215
Q9EXR9
A
1
1
215
3
7
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
9
A
THR
9
A
LYS
10
A
LYS
10
A
TRP
146
A
TRP
146
A
SER
151
A
SER
151
A
THR
126
A
THR
126
A
GLY
131
A
GLY
131
A
ILE
22
A
ILE
22
A
THR
26
A
THR
26
A
SER
31
A
SER
31
A
ALA
38
A
ALA
38
A
LYS
41
A
LYS
41
A
THR
44
A
THR
44
A
ALA
99
A
ALA
99
A
THR
103
A
THR
103
A
ALA
77
A
ALA
77
A
TYR
83
A
TYR
83
A
SER
62
A
SER
62
A
PRO
65
A
PRO
65
A
ILE
22
A
ILE
22
A
THR
26
A
THR
26
A
TYR
50
A
TYR
50
A
ASN
51
A
ASN
51
A
SER
56
A
SER
56
A
TYR
57
A
TYR
57
A
ARG
154
A
ARG
154
A
GLU
155
A
GLU
155
A
LEU
159
A
LEU
159
A
TYR
162
A
TYR
162
A
ILE
195
A
ILE
195
A
PRO
199
A
PRO
199
A
ALA
188
A
ALA
188
A
TYR
190
A
TYR
190
A
ALA
174
A
ALA
174
A
LEU
176
A
LEU
176
A
ILE
182
A
ILE
182
A
VAL
185
A
VAL
185
BINDING SITE FOR RESIDUE MPD A 300
A
MPD
300
Software
6
A
VAL
1
A
VAL
1
6
1_555
A
GLY
29
A
GLY
29
6
2_656
A
THR
166
A
THR
166
6
1_555
A
PHE
167
A
PHE
167
6
1_555
A
SER
168
A
SER
168
6
1_555
A
HIS
186
A
HIS
186
6
1_555
5
C 1 2 1