0.016667 0.009623 0.000000 0.000000 0.019245 0.000000 0.000000 0.000000 0.010423 0.00000 0.00000 0.00000 Mooers, B.H. Datta, D. Baase, W.A. Zollars, E.S. Mayo, S.L. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 59.999 59.999 95.941 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C4 H10 O2 S2 154.251 2-HYDROXYETHYL DISULFIDE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N C N 139 N O N 140 N C N 141 N S N 142 N S N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C Y 161 N C Y 162 N N Y 163 N C Y 164 N C Y 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N O N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 S C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N K N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N C N 233 N N N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N S N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N P N 294 N O N 295 N O N 296 N O N 297 N O N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N O N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 R C N 334 N O N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N N Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N C N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N doub Y 266 N sing Y 267 N sing N 268 N sing Y 269 N doub N 270 N sing Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 332 741 756 10.1016/S0022-2836(03)00856-8 12963380 Repacking the Core of T4 lysozyme by automated design 2003 10.2210/pdb1p3n/pdb pdb_00001p3n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 YALE MIRRORS IMAGE PLATE 2001-08-24 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 18642.281 LYSOZYME 3.2.1.17 C54T, V87I, I100V, M102L, M106I, V111A, M120Y, L133F, V149I, T152V, C97A 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 39.098 POTASSIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 154.251 2-HYDROXYETHYL DISULFIDE 1 syn non-polymer 18.015 water 202 nat water Lysis protein, Muramidase, Endolysin no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPIYDSLDAVRRAALVNLVFQIGETGAAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPIYDSLDAVRRAALVNLVFQIGETGAAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato Escherichia sample 10665 Enterobacteria phage T4 562 Escherichia coli RR1 PLASMID PHS1403 1 2.69 53.87 VAPOR DIFFUSION, HANGING DROP 6.7 Potassium phosphate, sodium PHOSPHATE, NaCl, BME, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 pdbx_struct_conn_angle refine struct_conn struct_site database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Derived calculations Refinement description Database references Data collection Refinement description 1 0 2003-10-07 1 1 2008-04-29 1 2 2011-07-13 1 3 2021-07-28 1 4 2021-10-27 1 5 2023-08-16 _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _refine.ls_percent_reflns_obs _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details T4 Lysozyme Core Repacking Mutant V87I/TA Repacking of the Core of T4 Lysozyme by Automated Design Repacking of the Core of T4 Lysozyme by Automated Design T4 LYSOZYME CORE REPACKING BACK-REVERTANT L102M/CORE10 RCSB Y RCSB 2003-04-17 REL REL PO4 PHOSPHATE ION K POTASSIUM ION CL CHLORIDE ION HED 2-HYDROXYETHYL DISULFIDE HOH water 1L63 PDB ENTRY 1L63 PDB experimental model PO4 168 2 PO4 PO4 168 A K 972 3 K K 972 A CL 973 4 CL CL 973 A CL 978 4 CL CL 978 A HED 966 5 HED HED 966 A HOH 171 6 HOH HOH 171 A HOH 172 6 HOH HOH 172 A HOH 174 6 HOH HOH 174 A HOH 175 6 HOH HOH 175 A HOH 177 6 HOH HOH 177 A HOH 179 6 HOH HOH 179 A HOH 180 6 HOH HOH 180 A HOH 181 6 HOH HOH 181 A HOH 182 6 HOH HOH 182 A HOH 183 6 HOH HOH 183 A HOH 184 6 HOH HOH 184 A HOH 185 6 HOH HOH 185 A HOH 186 6 HOH HOH 186 A HOH 187 6 HOH HOH 187 A HOH 188 6 HOH HOH 188 A HOH 189 6 HOH HOH 189 A HOH 190 6 HOH HOH 190 A HOH 191 6 HOH HOH 191 A HOH 192 6 HOH HOH 192 A HOH 193 6 HOH HOH 193 A HOH 194 6 HOH HOH 194 A HOH 195 6 HOH HOH 195 A HOH 196 6 HOH HOH 196 A HOH 197 6 HOH HOH 197 A HOH 200 6 HOH HOH 200 A HOH 202 6 HOH HOH 202 A HOH 204 6 HOH HOH 204 A HOH 206 6 HOH HOH 206 A HOH 207 6 HOH HOH 207 A HOH 208 6 HOH HOH 208 A HOH 209 6 HOH HOH 209 A HOH 211 6 HOH HOH 211 A HOH 213 6 HOH HOH 213 A HOH 214 6 HOH HOH 214 A HOH 215 6 HOH HOH 215 A HOH 216 6 HOH HOH 216 A HOH 217 6 HOH HOH 217 A HOH 218 6 HOH HOH 218 A HOH 219 6 HOH HOH 219 A HOH 220 6 HOH HOH 220 A HOH 221 6 HOH HOH 221 A HOH 222 6 HOH HOH 222 A HOH 223 6 HOH HOH 223 A HOH 224 6 HOH HOH 224 A HOH 226 6 HOH HOH 226 A HOH 227 6 HOH HOH 227 A HOH 228 6 HOH HOH 228 A HOH 230 6 HOH HOH 230 A HOH 231 6 HOH HOH 231 A HOH 232 6 HOH HOH 232 A HOH 233 6 HOH HOH 233 A HOH 234 6 HOH HOH 234 A HOH 236 6 HOH HOH 236 A HOH 237 6 HOH HOH 237 A HOH 238 6 HOH HOH 238 A HOH 239 6 HOH HOH 239 A HOH 240 6 HOH HOH 240 A HOH 244 6 HOH HOH 244 A HOH 246 6 HOH HOH 246 A HOH 248 6 HOH HOH 248 A HOH 249 6 HOH HOH 249 A HOH 250 6 HOH HOH 250 A HOH 251 6 HOH HOH 251 A HOH 253 6 HOH HOH 253 A HOH 254 6 HOH HOH 254 A HOH 256 6 HOH HOH 256 A HOH 257 6 HOH HOH 257 A HOH 259 6 HOH HOH 259 A HOH 260 6 HOH HOH 260 A HOH 261 6 HOH HOH 261 A HOH 266 6 HOH HOH 266 A HOH 269 6 HOH HOH 269 A HOH 270 6 HOH HOH 270 A HOH 272 6 HOH HOH 272 A HOH 273 6 HOH HOH 273 A HOH 276 6 HOH HOH 276 A HOH 278 6 HOH HOH 278 A HOH 279 6 HOH HOH 279 A HOH 281 6 HOH HOH 281 A HOH 282 6 HOH HOH 282 A HOH 283 6 HOH HOH 283 A HOH 284 6 HOH HOH 284 A HOH 285 6 HOH HOH 285 A HOH 286 6 HOH HOH 286 A HOH 288 6 HOH HOH 288 A HOH 291 6 HOH HOH 291 A HOH 292 6 HOH HOH 292 A HOH 294 6 HOH HOH 294 A HOH 295 6 HOH HOH 295 A HOH 296 6 HOH HOH 296 A HOH 297 6 HOH HOH 297 A HOH 299 6 HOH HOH 299 A HOH 302 6 HOH HOH 302 A HOH 304 6 HOH HOH 304 A HOH 306 6 HOH HOH 306 A HOH 308 6 HOH HOH 308 A HOH 312 6 HOH HOH 312 A HOH 313 6 HOH HOH 313 A HOH 314 6 HOH HOH 314 A HOH 315 6 HOH HOH 315 A HOH 317 6 HOH HOH 317 A HOH 319 6 HOH HOH 319 A HOH 320 6 HOH HOH 320 A HOH 401 6 HOH HOH 401 A HOH 406 6 HOH HOH 406 A HOH 407 6 HOH HOH 407 A HOH 408 6 HOH HOH 408 A HOH 409 6 HOH HOH 409 A HOH 410 6 HOH HOH 410 A HOH 411 6 HOH HOH 411 A HOH 412 6 HOH HOH 412 A HOH 413 6 HOH HOH 413 A HOH 414 6 HOH HOH 414 A HOH 415 6 HOH HOH 415 A HOH 416 6 HOH HOH 416 A HOH 418 6 HOH HOH 418 A HOH 419 6 HOH HOH 419 A HOH 420 6 HOH HOH 420 A HOH 421 6 HOH HOH 421 A HOH 422 6 HOH HOH 422 A HOH 424 6 HOH HOH 424 A HOH 427 6 HOH HOH 427 A HOH 428 6 HOH HOH 428 A HOH 429 6 HOH HOH 429 A HOH 430 6 HOH HOH 430 A HOH 431 6 HOH HOH 431 A HOH 432 6 HOH HOH 432 A HOH 433 6 HOH HOH 433 A HOH 435 6 HOH HOH 435 A HOH 436 6 HOH HOH 436 A HOH 437 6 HOH HOH 437 A HOH 440 6 HOH HOH 440 A HOH 441 6 HOH HOH 441 A HOH 442 6 HOH HOH 442 A HOH 443 6 HOH HOH 443 A HOH 444 6 HOH HOH 444 A HOH 449 6 HOH HOH 449 A HOH 450 6 HOH HOH 450 A HOH 456 6 HOH HOH 456 A HOH 457 6 HOH HOH 457 A HOH 459 6 HOH HOH 459 A HOH 460 6 HOH HOH 460 A HOH 461 6 HOH HOH 461 A HOH 462 6 HOH HOH 462 A HOH 463 6 HOH HOH 463 A HOH 464 6 HOH HOH 464 A HOH 466 6 HOH HOH 466 A HOH 467 6 HOH HOH 467 A HOH 468 6 HOH HOH 468 A HOH 469 6 HOH HOH 469 A HOH 474 6 HOH HOH 474 A HOH 475 6 HOH HOH 475 A HOH 476 6 HOH HOH 476 A HOH 477 6 HOH HOH 477 A HOH 491 6 HOH HOH 491 A HOH 492 6 HOH HOH 492 A HOH 493 6 HOH HOH 493 A HOH 494 6 HOH HOH 494 A HOH 495 6 HOH HOH 495 A HOH 496 6 HOH HOH 496 A HOH 497 6 HOH HOH 497 A HOH 498 6 HOH HOH 498 A HOH 499 6 HOH HOH 499 A HOH 500 6 HOH HOH 500 A HOH 501 6 HOH HOH 501 A HOH 502 6 HOH HOH 502 A HOH 503 6 HOH HOH 503 A HOH 504 6 HOH HOH 504 A HOH 505 6 HOH HOH 505 A HOH 506 6 HOH HOH 506 A HOH 507 6 HOH HOH 507 A HOH 508 6 HOH HOH 508 A HOH 509 6 HOH HOH 509 A HOH 512 6 HOH HOH 512 A HOH 513 6 HOH HOH 513 A HOH 515 6 HOH HOH 515 A HOH 516 6 HOH HOH 516 A HOH 517 6 HOH HOH 517 A HOH 519 6 HOH HOH 519 A HOH 520 6 HOH HOH 520 A HOH 521 6 HOH HOH 521 A HOH 522 6 HOH HOH 522 A HOH 523 6 HOH HOH 523 A HOH 524 6 HOH HOH 524 A HOH 528 6 HOH HOH 528 A HOH 530 6 HOH HOH 530 A HOH 532 6 HOH HOH 532 A HOH 533 6 HOH HOH 533 A HOH 534 6 HOH HOH 534 A HOH 535 6 HOH HOH 535 A HOH 537 6 HOH HOH 537 A HOH 539 6 HOH HOH 539 A HOH 540 6 HOH HOH 540 A HOH 541 6 HOH HOH 541 A HOH 542 6 HOH HOH 542 A HOH 543 6 HOH HOH 543 A HOH 544 6 HOH HOH 544 A HOH 546 6 HOH HOH 546 A HOH 547 6 HOH HOH 547 A HOH 548 6 HOH HOH 548 A HOH 550 6 HOH HOH 550 A HOH 551 6 HOH HOH 551 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A ILE 87 n 87 ILE 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A VAL 100 n 100 VAL 100 A ASN 101 n 101 ASN 101 A LEU 102 n 102 LEU 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A ALA 111 n 111 ALA 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A TYR 120 n 120 TYR 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A PHE 133 n 133 PHE 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A ILE 149 n 149 ILE 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A VAL 152 n 152 VAL 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A LEU 164 n 164 LEU 164 A author_defined_assembly 1 monomeric A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A GLU 11 A OE2 GLU 11 1_555 88.2 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A TYR 18 A OH TYR 18 1_555 86.3 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A TYR 18 A OH TYR 18 1_555 111.8 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A HOH 204 G O HOH 1_555 138.7 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A HOH 204 G O HOH 1_555 55.7 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 A HOH 204 G O HOH 1_555 89.4 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A HOH 207 G O HOH 1_555 87.2 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A HOH 207 G O HOH 1_555 74.9 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 A HOH 207 G O HOH 1_555 170.5 A HOH 204 G O HOH 1_555 A K 972 C K K 1_555 A HOH 207 G O HOH 1_555 100.0 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A HOH 304 G O HOH 1_555 116.0 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A HOH 304 G O HOH 1_555 129.1 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 A HOH 304 G O HOH 1_555 113.6 A HOH 204 G O HOH 1_555 A K 972 C K K 1_555 A HOH 304 G O HOH 1_555 103.3 A HOH 207 G O HOH 1_555 A K 972 C K K 1_555 A HOH 304 G O HOH 1_555 63.3 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 62.0 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 149.9 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 72.9 A HOH 204 G O HOH 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 153.0 A HOH 207 G O HOH 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 97.9 A HOH 304 G O HOH 1_555 A K 972 C K K 1_555 A HOH 502 G O HOH 1_555 67.5 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 149.3 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 84.2 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 124.1 A HOH 204 G O HOH 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 55.1 A HOH 207 G O HOH 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 62.1 A HOH 304 G O HOH 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 51.6 A HOH 502 G O HOH 1_555 A K 972 C K K 1_555 A HOH 509 G O HOH 1_555 118.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N ILE 27 A N ILE 27 A O HIS 31 A O HIS 31 1 A CA ASN 55 PLANAR 1 5.64 0.90 118.30 123.94 A A A CB CG OD1 ASP ASP ASP 10 10 10 N 1 4.12 0.50 120.30 124.42 A A A NE CZ NH1 ARG ARG ARG 14 14 14 N 1 5.55 0.90 118.30 123.85 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -5.95 0.90 118.30 112.35 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 11.67 1.80 110.60 122.27 A A A N CA CB ASN ASN ASN 55 55 55 N 1 6.06 0.90 118.30 124.36 A A A CB CG OD1 ASP ASP ASP 70 70 70 N 1 -6.10 0.90 118.30 112.20 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 4.57 0.50 120.30 124.87 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 -5.86 0.90 118.30 112.44 A A A CB CG OD2 ASP ASP ASP 127 127 127 N 1 -3.76 0.50 120.30 116.54 A A A NE CZ NH2 ARG ARG ARG 137 137 137 B B B N 1 A A CD OE2 GLU GLU 128 128 0.069 0.011 1.252 1.321 N 1 A ILE 29 -103.39 74.17 1 A PHE 114 -88.38 42.35 1 A ASN 163 95.77 -0.57 0.94 0.94 0.00 0.94 0.00 -1.87 Working and test sets were not combined during the final cycle of refinement to preserve the integrity of the test set. 0.247 0.186 0.189 1.55 23.973 1438 29705 26984 5 96 RANDOM 1 TNT THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1L63 TNT TNT 137.48 .745 1.55 23.973 207 1548 16 0 1325 0.013 2.381 19.576 1.519 23.973 1P3N 28432 28432 0.0 0.0 0.286 0.286 1 6.6 3.7 96.7 0.286 1.55 1.60 2.4 2625 0.286 2.9 97.0 data reduction MOSFLM data scaling SCALA refinement TNT data scaling CCP4 (SCALA) phasing TNT CORE REDESIGN BACK-REVERTANT I103V/CORE10 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A ASN 81 A ASN 81 1 3 23 A LEU 84 A LEU 84 HELX_P A LEU 91 A LEU 91 1 4 8 A ASP 92 A ASP 92 HELX_P A GLY 113 A GLY 113 1 5 22 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 6 10 A ARG 125 A ARG 125 HELX_P A ALA 134 A ALA 134 1 7 10 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 8 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 9 15 A TRP 158 A TRP 158 HELX_P A LYS 162 A LYS 162 5 10 5 metalc 2.951 A GLU 11 A O GLU 11 1_555 A K 972 C K K 1_555 metalc 2.961 A GLU 11 A OE2 GLU 11 1_555 A K 972 C K K 1_555 metalc 2.968 A TYR 18 A OH TYR 18 1_555 A K 972 C K K 1_555 metalc 2.984 A HOH 204 G O HOH 1_555 A K 972 C K K 1_555 metalc 3.019 A HOH 207 G O HOH 1_555 A K 972 C K K 1_555 metalc 2.949 A HOH 304 G O HOH 1_555 A K 972 C K K 1_555 metalc 3.202 A HOH 502 G O HOH 1_555 A K 972 C K K 1_555 metalc 3.329 A HOH 509 G O HOH 1_555 A K 972 C K K 1_555 HYDROLASE HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, DESIGNED CORE MUTANT, AUTOMATED PROTEIN DESIGN, PROTEIN ENGINEERING, PROTEIN FOLDING, PROTEIN STABILITY, CORE REPACKING, BACK REVERTANT, DEAD-END ELIMINATION THEOREM, SIDE-CHAIN PACKING, OPTIMIZED ROTAMER COMBINATIONS, ORBIT, HYDROLASE LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 1P3N 1 164 P00720 A 1 1 164 1 CYS engineered mutation THR 54 1P3N A P00720 UNP 54 54 1 VAL engineered mutation ILE 87 1P3N A P00720 UNP 87 87 1 CYS engineered mutation ALA 97 1P3N A P00720 UNP 97 97 1 ILE engineered mutation VAL 100 1P3N A P00720 UNP 100 100 1 MET engineered mutation LEU 102 1P3N A P00720 UNP 102 102 1 MET engineered mutation ILE 106 1P3N A P00720 UNP 106 106 1 VAL engineered mutation ALA 111 1P3N A P00720 UNP 111 111 1 MET engineered mutation TYR 120 1P3N A P00720 UNP 120 120 1 LEU engineered mutation PHE 133 1P3N A P00720 UNP 133 133 1 VAL engineered mutation ILE 149 1P3N A P00720 UNP 149 149 1 THR engineered mutation VAL 152 1P3N A P00720 UNP 152 152 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A LEU 32 A LEU 32 BINDING SITE FOR RESIDUE PO4 A 168 A PO4 168 Software 9 BINDING SITE FOR RESIDUE K A 972 A K 972 Software 5 BINDING SITE FOR RESIDUE CL A 973 A CL 973 Software 6 BINDING SITE FOR RESIDUE CL A 978 A CL 978 Software 2 BINDING SITE FOR RESIDUE HED A 966 A HED 966 Software 5 A ARG 14 A ARG 14 9 4_545 A LYS 19 A LYS 19 9 4_545 A ARG 125 A ARG 125 9 1_555 A TRP 126 A TRP 126 9 1_555 A ASP 127 A ASP 127 9 1_555 A GLU 128 A GLU 128 9 1_555 A HOH 192 G HOH 9 1_555 A HOH 468 G HOH 9 1_555 A HOH 543 G HOH 9 1_555 A GLU 11 A GLU 11 5 1_555 A TYR 18 A TYR 18 5 1_555 A HOH 204 G HOH 5 1_555 A HOH 207 G HOH 5 1_555 A HOH 304 G HOH 5 1_555 A LYS 124 A LYS 124 6 4_655 A THR 142 A THR 142 6 1_555 A ASN 144 A ASN 144 6 1_555 A ARG 145 A ARG 145 6 1_555 A HOH 209 G HOH 6 1_555 A HOH 291 G HOH 6 1_555 A LYS 135 A LYS 135 2 3_665 A HOH 220 G HOH 2 3_665 A ILE 3 A ILE 3 5 5_555 A ASN 68 A ASN 68 5 1_555 A ASP 72 A ASP 72 5 1_555 A TYR 88 A TYR 88 5 5_555 A ALA 93 A ALA 93 5 5_555 154 P 32 2 1