0.016667
0.009623
0.000000
0.000000
0.019245
0.000000
0.000000
0.000000
0.010423
0.00000
0.00000
0.00000
Mooers, B.H.
Datta, D.
Baase, W.A.
Zollars, E.S.
Mayo, S.L.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
59.999
59.999
95.941
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C4 H10 O2 S2
154.251
2-HYDROXYETHYL DISULFIDE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
S
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
Y
161
N
C
Y
162
N
N
Y
163
N
C
Y
164
N
C
Y
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
S
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
K
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
N
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
S
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
P
N
294
N
O
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
R
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
N
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
332
741
756
10.1016/S0022-2836(03)00856-8
12963380
Repacking the Core of T4 lysozyme by automated design
2003
10.2210/pdb1p3n/pdb
pdb_00001p3n
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
YALE MIRRORS
IMAGE PLATE
2001-08-24
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
18642.281
LYSOZYME
3.2.1.17
C54T, V87I, I100V, M102L, M106I, V111A, M120Y, L133F, V149I, T152V, C97A
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
154.251
2-HYDROXYETHYL DISULFIDE
1
syn
non-polymer
18.015
water
202
nat
water
Lysis protein, Muramidase, Endolysin
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPIYDSLDAVRRAALVNLVFQIGETGAAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPIYDSLDAVRRAALVNLVFQIGETGAAGFTNSLRYLQQKRWDEAAVNFAKSRWYNQTPNRAKRIITVFRTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
10665
Enterobacteria phage T4
562
Escherichia coli
RR1
PLASMID
PHS1403
1
2.69
53.87
VAPOR DIFFUSION, HANGING DROP
6.7
Potassium phosphate, sodium PHOSPHATE, NaCl, BME, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
pdbx_struct_conn_angle
refine
struct_conn
struct_site
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Refinement description
Database references
Data collection
Refinement description
1
0
2003-10-07
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-07-28
1
4
2021-10-27
1
5
2023-08-16
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_refine.ls_percent_reflns_obs
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
T4 Lysozyme Core Repacking Mutant V87I/TA
Repacking of the Core of T4 Lysozyme by Automated Design
Repacking of the Core of T4 Lysozyme by Automated Design
T4 LYSOZYME CORE REPACKING BACK-REVERTANT L102M/CORE10
RCSB
Y
RCSB
2003-04-17
REL
REL
PO4
PHOSPHATE ION
K
POTASSIUM ION
CL
CHLORIDE ION
HED
2-HYDROXYETHYL DISULFIDE
HOH
water
1L63
PDB ENTRY 1L63
PDB
experimental model
PO4
168
2
PO4
PO4
168
A
K
972
3
K
K
972
A
CL
973
4
CL
CL
973
A
CL
978
4
CL
CL
978
A
HED
966
5
HED
HED
966
A
HOH
171
6
HOH
HOH
171
A
HOH
172
6
HOH
HOH
172
A
HOH
174
6
HOH
HOH
174
A
HOH
175
6
HOH
HOH
175
A
HOH
177
6
HOH
HOH
177
A
HOH
179
6
HOH
HOH
179
A
HOH
180
6
HOH
HOH
180
A
HOH
181
6
HOH
HOH
181
A
HOH
182
6
HOH
HOH
182
A
HOH
183
6
HOH
HOH
183
A
HOH
184
6
HOH
HOH
184
A
HOH
185
6
HOH
HOH
185
A
HOH
186
6
HOH
HOH
186
A
HOH
187
6
HOH
HOH
187
A
HOH
188
6
HOH
HOH
188
A
HOH
189
6
HOH
HOH
189
A
HOH
190
6
HOH
HOH
190
A
HOH
191
6
HOH
HOH
191
A
HOH
192
6
HOH
HOH
192
A
HOH
193
6
HOH
HOH
193
A
HOH
194
6
HOH
HOH
194
A
HOH
195
6
HOH
HOH
195
A
HOH
196
6
HOH
HOH
196
A
HOH
197
6
HOH
HOH
197
A
HOH
200
6
HOH
HOH
200
A
HOH
202
6
HOH
HOH
202
A
HOH
204
6
HOH
HOH
204
A
HOH
206
6
HOH
HOH
206
A
HOH
207
6
HOH
HOH
207
A
HOH
208
6
HOH
HOH
208
A
HOH
209
6
HOH
HOH
209
A
HOH
211
6
HOH
HOH
211
A
HOH
213
6
HOH
HOH
213
A
HOH
214
6
HOH
HOH
214
A
HOH
215
6
HOH
HOH
215
A
HOH
216
6
HOH
HOH
216
A
HOH
217
6
HOH
HOH
217
A
HOH
218
6
HOH
HOH
218
A
HOH
219
6
HOH
HOH
219
A
HOH
220
6
HOH
HOH
220
A
HOH
221
6
HOH
HOH
221
A
HOH
222
6
HOH
HOH
222
A
HOH
223
6
HOH
HOH
223
A
HOH
224
6
HOH
HOH
224
A
HOH
226
6
HOH
HOH
226
A
HOH
227
6
HOH
HOH
227
A
HOH
228
6
HOH
HOH
228
A
HOH
230
6
HOH
HOH
230
A
HOH
231
6
HOH
HOH
231
A
HOH
232
6
HOH
HOH
232
A
HOH
233
6
HOH
HOH
233
A
HOH
234
6
HOH
HOH
234
A
HOH
236
6
HOH
HOH
236
A
HOH
237
6
HOH
HOH
237
A
HOH
238
6
HOH
HOH
238
A
HOH
239
6
HOH
HOH
239
A
HOH
240
6
HOH
HOH
240
A
HOH
244
6
HOH
HOH
244
A
HOH
246
6
HOH
HOH
246
A
HOH
248
6
HOH
HOH
248
A
HOH
249
6
HOH
HOH
249
A
HOH
250
6
HOH
HOH
250
A
HOH
251
6
HOH
HOH
251
A
HOH
253
6
HOH
HOH
253
A
HOH
254
6
HOH
HOH
254
A
HOH
256
6
HOH
HOH
256
A
HOH
257
6
HOH
HOH
257
A
HOH
259
6
HOH
HOH
259
A
HOH
260
6
HOH
HOH
260
A
HOH
261
6
HOH
HOH
261
A
HOH
266
6
HOH
HOH
266
A
HOH
269
6
HOH
HOH
269
A
HOH
270
6
HOH
HOH
270
A
HOH
272
6
HOH
HOH
272
A
HOH
273
6
HOH
HOH
273
A
HOH
276
6
HOH
HOH
276
A
HOH
278
6
HOH
HOH
278
A
HOH
279
6
HOH
HOH
279
A
HOH
281
6
HOH
HOH
281
A
HOH
282
6
HOH
HOH
282
A
HOH
283
6
HOH
HOH
283
A
HOH
284
6
HOH
HOH
284
A
HOH
285
6
HOH
HOH
285
A
HOH
286
6
HOH
HOH
286
A
HOH
288
6
HOH
HOH
288
A
HOH
291
6
HOH
HOH
291
A
HOH
292
6
HOH
HOH
292
A
HOH
294
6
HOH
HOH
294
A
HOH
295
6
HOH
HOH
295
A
HOH
296
6
HOH
HOH
296
A
HOH
297
6
HOH
HOH
297
A
HOH
299
6
HOH
HOH
299
A
HOH
302
6
HOH
HOH
302
A
HOH
304
6
HOH
HOH
304
A
HOH
306
6
HOH
HOH
306
A
HOH
308
6
HOH
HOH
308
A
HOH
312
6
HOH
HOH
312
A
HOH
313
6
HOH
HOH
313
A
HOH
314
6
HOH
HOH
314
A
HOH
315
6
HOH
HOH
315
A
HOH
317
6
HOH
HOH
317
A
HOH
319
6
HOH
HOH
319
A
HOH
320
6
HOH
HOH
320
A
HOH
401
6
HOH
HOH
401
A
HOH
406
6
HOH
HOH
406
A
HOH
407
6
HOH
HOH
407
A
HOH
408
6
HOH
HOH
408
A
HOH
409
6
HOH
HOH
409
A
HOH
410
6
HOH
HOH
410
A
HOH
411
6
HOH
HOH
411
A
HOH
412
6
HOH
HOH
412
A
HOH
413
6
HOH
HOH
413
A
HOH
414
6
HOH
HOH
414
A
HOH
415
6
HOH
HOH
415
A
HOH
416
6
HOH
HOH
416
A
HOH
418
6
HOH
HOH
418
A
HOH
419
6
HOH
HOH
419
A
HOH
420
6
HOH
HOH
420
A
HOH
421
6
HOH
HOH
421
A
HOH
422
6
HOH
HOH
422
A
HOH
424
6
HOH
HOH
424
A
HOH
427
6
HOH
HOH
427
A
HOH
428
6
HOH
HOH
428
A
HOH
429
6
HOH
HOH
429
A
HOH
430
6
HOH
HOH
430
A
HOH
431
6
HOH
HOH
431
A
HOH
432
6
HOH
HOH
432
A
HOH
433
6
HOH
HOH
433
A
HOH
435
6
HOH
HOH
435
A
HOH
436
6
HOH
HOH
436
A
HOH
437
6
HOH
HOH
437
A
HOH
440
6
HOH
HOH
440
A
HOH
441
6
HOH
HOH
441
A
HOH
442
6
HOH
HOH
442
A
HOH
443
6
HOH
HOH
443
A
HOH
444
6
HOH
HOH
444
A
HOH
449
6
HOH
HOH
449
A
HOH
450
6
HOH
HOH
450
A
HOH
456
6
HOH
HOH
456
A
HOH
457
6
HOH
HOH
457
A
HOH
459
6
HOH
HOH
459
A
HOH
460
6
HOH
HOH
460
A
HOH
461
6
HOH
HOH
461
A
HOH
462
6
HOH
HOH
462
A
HOH
463
6
HOH
HOH
463
A
HOH
464
6
HOH
HOH
464
A
HOH
466
6
HOH
HOH
466
A
HOH
467
6
HOH
HOH
467
A
HOH
468
6
HOH
HOH
468
A
HOH
469
6
HOH
HOH
469
A
HOH
474
6
HOH
HOH
474
A
HOH
475
6
HOH
HOH
475
A
HOH
476
6
HOH
HOH
476
A
HOH
477
6
HOH
HOH
477
A
HOH
491
6
HOH
HOH
491
A
HOH
492
6
HOH
HOH
492
A
HOH
493
6
HOH
HOH
493
A
HOH
494
6
HOH
HOH
494
A
HOH
495
6
HOH
HOH
495
A
HOH
496
6
HOH
HOH
496
A
HOH
497
6
HOH
HOH
497
A
HOH
498
6
HOH
HOH
498
A
HOH
499
6
HOH
HOH
499
A
HOH
500
6
HOH
HOH
500
A
HOH
501
6
HOH
HOH
501
A
HOH
502
6
HOH
HOH
502
A
HOH
503
6
HOH
HOH
503
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
508
6
HOH
HOH
508
A
HOH
509
6
HOH
HOH
509
A
HOH
512
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
515
6
HOH
HOH
515
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
519
6
HOH
HOH
519
A
HOH
520
6
HOH
HOH
520
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
528
6
HOH
HOH
528
A
HOH
530
6
HOH
HOH
530
A
HOH
532
6
HOH
HOH
532
A
HOH
533
6
HOH
HOH
533
A
HOH
534
6
HOH
HOH
534
A
HOH
535
6
HOH
HOH
535
A
HOH
537
6
HOH
HOH
537
A
HOH
539
6
HOH
HOH
539
A
HOH
540
6
HOH
HOH
540
A
HOH
541
6
HOH
HOH
541
A
HOH
542
6
HOH
HOH
542
A
HOH
543
6
HOH
HOH
543
A
HOH
544
6
HOH
HOH
544
A
HOH
546
6
HOH
HOH
546
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
550
6
HOH
HOH
550
A
HOH
551
6
HOH
HOH
551
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
ILE
87
n
87
ILE
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
ASN
101
n
101
ASN
101
A
LEU
102
n
102
LEU
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
ILE
106
n
106
ILE
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
ALA
111
n
111
ALA
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
TYR
120
n
120
TYR
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
PHE
133
n
133
PHE
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
ILE
149
n
149
ILE
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
VAL
152
n
152
VAL
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
ASN
163
n
163
ASN
163
A
LEU
164
n
164
LEU
164
A
author_defined_assembly
1
monomeric
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
GLU
11
A
OE2
GLU
11
1_555
88.2
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
TYR
18
A
OH
TYR
18
1_555
86.3
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
TYR
18
A
OH
TYR
18
1_555
111.8
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
138.7
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
55.7
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
204
G
O
HOH
1_555
89.4
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
87.2
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
74.9
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
170.5
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
207
G
O
HOH
1_555
100.0
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
116.0
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
129.1
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
113.6
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
103.3
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
304
G
O
HOH
1_555
63.3
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
62.0
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
149.9
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
72.9
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
153.0
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
97.9
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
502
G
O
HOH
1_555
67.5
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
149.3
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
84.2
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
124.1
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
55.1
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
62.1
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
51.6
A
HOH
502
G
O
HOH
1_555
A
K
972
C
K
K
1_555
A
HOH
509
G
O
HOH
1_555
118.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
THR
26
A
O
THR
26
A
N
ILE
27
A
N
ILE
27
A
O
HIS
31
A
O
HIS
31
1
A
CA
ASN
55
PLANAR
1
5.64
0.90
118.30
123.94
A
A
A
CB
CG
OD1
ASP
ASP
ASP
10
10
10
N
1
4.12
0.50
120.30
124.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
14
14
14
N
1
5.55
0.90
118.30
123.85
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-5.95
0.90
118.30
112.35
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
11.67
1.80
110.60
122.27
A
A
A
N
CA
CB
ASN
ASN
ASN
55
55
55
N
1
6.06
0.90
118.30
124.36
A
A
A
CB
CG
OD1
ASP
ASP
ASP
70
70
70
N
1
-6.10
0.90
118.30
112.20
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
4.57
0.50
120.30
124.87
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
76
76
76
N
1
-5.86
0.90
118.30
112.44
A
A
A
CB
CG
OD2
ASP
ASP
ASP
127
127
127
N
1
-3.76
0.50
120.30
116.54
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
137
137
137
B
B
B
N
1
A
A
CD
OE2
GLU
GLU
128
128
0.069
0.011
1.252
1.321
N
1
A
ILE
29
-103.39
74.17
1
A
PHE
114
-88.38
42.35
1
A
ASN
163
95.77
-0.57
0.94
0.94
0.00
0.94
0.00
-1.87
Working and test sets were not combined during the final cycle
of refinement to preserve the integrity of the test set.
0.247
0.186
0.189
1.55
23.973
1438
29705
26984
5
96
RANDOM
1
TNT
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1L63
TNT
TNT
137.48
.745
1.55
23.973
207
1548
16
0
1325
0.013
2.381
19.576
1.519
23.973
1P3N
28432
28432
0.0
0.0
0.286
0.286
1
6.6
3.7
96.7
0.286
1.55
1.60
2.4
2625
0.286
2.9
97.0
data reduction
MOSFLM
data scaling
SCALA
refinement
TNT
data scaling
CCP4
(SCALA)
phasing
TNT
CORE REDESIGN BACK-REVERTANT I103V/CORE10
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
1
11
A
SER
38
A
SER
38
HELX_P
A
GLY
51
A
GLY
51
1
2
14
A
THR
59
A
THR
59
HELX_P
A
ASN
81
A
ASN
81
1
3
23
A
LEU
84
A
LEU
84
HELX_P
A
LEU
91
A
LEU
91
1
4
8
A
ASP
92
A
ASP
92
HELX_P
A
GLY
113
A
GLY
113
1
5
22
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
6
10
A
ARG
125
A
ARG
125
HELX_P
A
ALA
134
A
ALA
134
1
7
10
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
8
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
9
15
A
TRP
158
A
TRP
158
HELX_P
A
LYS
162
A
LYS
162
5
10
5
metalc
2.951
A
GLU
11
A
O
GLU
11
1_555
A
K
972
C
K
K
1_555
metalc
2.961
A
GLU
11
A
OE2
GLU
11
1_555
A
K
972
C
K
K
1_555
metalc
2.968
A
TYR
18
A
OH
TYR
18
1_555
A
K
972
C
K
K
1_555
metalc
2.984
A
HOH
204
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.019
A
HOH
207
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
2.949
A
HOH
304
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.202
A
HOH
502
G
O
HOH
1_555
A
K
972
C
K
K
1_555
metalc
3.329
A
HOH
509
G
O
HOH
1_555
A
K
972
C
K
K
1_555
HYDROLASE
HYDROLASE (O-GLYCOSYL), T4 LYSOZYME, DESIGNED CORE MUTANT, AUTOMATED PROTEIN DESIGN, PROTEIN ENGINEERING, PROTEIN FOLDING, PROTEIN STABILITY, CORE REPACKING, BACK REVERTANT, DEAD-END ELIMINATION THEOREM, SIDE-CHAIN PACKING, OPTIMIZED ROTAMER COMBINATIONS, ORBIT, HYDROLASE
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
1P3N
1
164
P00720
A
1
1
164
1
CYS
engineered mutation
THR
54
1P3N
A
P00720
UNP
54
54
1
VAL
engineered mutation
ILE
87
1P3N
A
P00720
UNP
87
87
1
CYS
engineered mutation
ALA
97
1P3N
A
P00720
UNP
97
97
1
ILE
engineered mutation
VAL
100
1P3N
A
P00720
UNP
100
100
1
MET
engineered mutation
LEU
102
1P3N
A
P00720
UNP
102
102
1
MET
engineered mutation
ILE
106
1P3N
A
P00720
UNP
106
106
1
VAL
engineered mutation
ALA
111
1P3N
A
P00720
UNP
111
111
1
MET
engineered mutation
TYR
120
1P3N
A
P00720
UNP
120
120
1
LEU
engineered mutation
PHE
133
1P3N
A
P00720
UNP
133
133
1
VAL
engineered mutation
ILE
149
1P3N
A
P00720
UNP
149
149
1
THR
engineered mutation
VAL
152
1P3N
A
P00720
UNP
152
152
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
LEU
32
A
LEU
32
BINDING SITE FOR RESIDUE PO4 A 168
A
PO4
168
Software
9
BINDING SITE FOR RESIDUE K A 972
A
K
972
Software
5
BINDING SITE FOR RESIDUE CL A 973
A
CL
973
Software
6
BINDING SITE FOR RESIDUE CL A 978
A
CL
978
Software
2
BINDING SITE FOR RESIDUE HED A 966
A
HED
966
Software
5
A
ARG
14
A
ARG
14
9
4_545
A
LYS
19
A
LYS
19
9
4_545
A
ARG
125
A
ARG
125
9
1_555
A
TRP
126
A
TRP
126
9
1_555
A
ASP
127
A
ASP
127
9
1_555
A
GLU
128
A
GLU
128
9
1_555
A
HOH
192
G
HOH
9
1_555
A
HOH
468
G
HOH
9
1_555
A
HOH
543
G
HOH
9
1_555
A
GLU
11
A
GLU
11
5
1_555
A
TYR
18
A
TYR
18
5
1_555
A
HOH
204
G
HOH
5
1_555
A
HOH
207
G
HOH
5
1_555
A
HOH
304
G
HOH
5
1_555
A
LYS
124
A
LYS
124
6
4_655
A
THR
142
A
THR
142
6
1_555
A
ASN
144
A
ASN
144
6
1_555
A
ARG
145
A
ARG
145
6
1_555
A
HOH
209
G
HOH
6
1_555
A
HOH
291
G
HOH
6
1_555
A
LYS
135
A
LYS
135
2
3_665
A
HOH
220
G
HOH
2
3_665
A
ILE
3
A
ILE
3
5
5_555
A
ASN
68
A
ASN
68
5
1_555
A
ASP
72
A
ASP
72
5
1_555
A
TYR
88
A
TYR
88
5
5_555
A
ALA
93
A
ALA
93
5
5_555
154
P 32 2 1